Comparison between conventional methods, ChromAgar Candida® and PCR method for the identification of Candida species in clinical isolates

The increase in the incidence of yeast species causing fungemia in susceptible immunocompromised patients in the last two decades and the low sensitivity of conventional blood culture has led to the need to develop alternative approaches for the early detection and identification of causative species. The aim of this study was to compare the usefulness of molecular testing by the polymerase chain reaction (PCR) and conventional methods to identify clinical isolates of different species, using the ID32C ATB system (bioMérieux, France), chromogenic culture Chromagar Candida? (CHROMagar, France) and morphogenesis in corn meal agar. We studied 79 isolates, in which the most prevalent species using the system ID32C and PCR was C. albicans, followed by C. tropicalis, C. glabrata and C .krusei. PCR patterns obtained for the identification of clinical isolates were stable and consistent in the various independent studies and showed good reproducibility, concluding that PCR with species-specific primers that amplify genes ITS1 and ITS2 for rRNA or topoisomerase II primers is a very specific and sensitive method for the identification of C. glabrata, C. krusei, C. albicans, and with less specificity for C. tropicalis.     

Fabrication of synthetic polymer coatings and their use in feeder-free culture of human embryonic stem cells

The culture of human embryonic stem (hES) cells in defined and xenogeneic-free conditions will contribute substantially to future biotechnological and medical applications. To achieve this goal, we developed the first fully defined synthetic polymer coating poly[2-(methacryloyloxy)ethyl dimethyl-(3-sulfopropyl)ammonium hydroxide] (PMEDSAH) that sustains long-term growth of hES cells in different culture media. Here we describe a detailed protocol for the reproducible fabrication of PMEDSAH coating on tissue culture polystyrene dishes, and for the feeder-free culture of hES cells on PMEDSAH coating in defined culture medium. This culture system represents a key step toward the fully defined and xenogeneic-free culture of hES cells.     

Mitochondria could be a potential key mediator linking the intestinal microbiota to depression

The intestinal microbiota has been reported to affect depression, a common mental condition with severe health-related consequences. However, what mediates the effect of the intestinal microbiota on depression has not been well elucidated. We summarize the roles of the mitochondria in eliciting beneficial effects on the gut microbiota to ameliorate symptoms of depression. It is well known that mitochondria play a key role in depression. An important pathogenic factor, namely inflammatory response, may adversely impact mitochondrial functionality to maintain cellular homeostasis. Dysfunction of mitochondria not only affects neuronal function but also reduces neuron cell numbers. We posit that the intestinal microbiota could affect neuronal mitochondrial function through short-chain fatty acids such as butyrate. Brain inflammatory processes could also be affected through the modulation of gut permeability and blood lipopolysaccharide levels. Aberrant mitochondria functionality coupled to adverse cellular homeostasis could be a key mediator for the effect of the intestinal microbiota on the progression of depression.     

Imaging and artificial intelligence for progression of age-related macular degeneration

Age-related macular degeneration (AMD) is a leading cause of severe vision loss. With our aging population, it may affect 288 million people globally by the year 2040. AMD progresses from an early and intermediate dry form to an advanced one, which manifests as choroidal neovascularization and geographic atrophy. Conversion to AMD-related exudation is known as progression to neovascular AMD, and presence of geographic atrophy is known as progression to advanced dry AMD. AMD progression predictions could enable timely monitoring, earlier detection and treatment, improving vision outcomes. Machine learning approaches, a subset of artificial intelligence applications, applied on imaging data are showing promising results in predicting progression. Extracted biomarkers, specifically from optical coherence tomography scans, are informative in predicting progression events. The purpose of this mini review is to provide an overview about current machine learning applications in artificial intelligence for predicting AMD progression, and describe the various methods, data-input types, and imaging modalities used to identify high-risk patients. With advances in computational capabilities, artificial intelligence applications are likely to transform patient care and management in AMD. External validation studies that improve generalizability to populations and devices, as well as evaluating systems in real-world clinical settings are needed to improve the clinical translations of artificial intelligence AMD applications.     

Effects of wing polyphenism, aphid genotype and host plant chemistry on energy metabolism of the grain aphid, Sitobion avenae

Wing dimorphism has been proposed as a strategy to face trade-offs between flight capability and fecundity. In aphids, individuals with functional wings have slower development and lower fecundity compared with wingless individuals. However, differential maintenance costs between winged and wingless aphids have not been deeply investigated. In the current study, we studied the combined effect of wing dimorphism with the effects of aphid genotypes and of wheat hosts having different levels of chemical defences (hydroxamic acids, Hx) on adult body mass and standard metabolic rates (SMR) of winged and wingless morphs of the grain aphid, Sitobion avenae. We found that wingless aphids had higher body mass than winged aphids and that body mass also increased towards host with high Hx levels. Furthermore, winged aphids showed a plastic SMR in terms of Hx levels, whereas wingless aphids displayed a rigid reaction norm (significant interaction between morph condition and wheat host). These findings suggest that winged aphids have reduced adult size compared to wingless aphids, likely due to costs associated to the development of flight structure in early-life stages. These costs contrast with the absence of detectable metabolic costs related to fuelling and maintenance of the flight apparatus in adults.     

Space-time distribution patterns of shape Erica australis L. subsp. shape aragonensis (Willk) after experimental burning,cutting, and ploughing

The response of Erica australis to experimental burning, cutting and ploughing treatments was studied in two heathland communities where it was dominant. The treatments represent those most frequently originated by humans on these heathland communities throughout history. The response of this species in a community where it is dominant and there is no strong interspecific competition was also compared to that produced by it in a community where there is competition. It can be observed that the response to burning and cutting treatments is very similar with very fast spatial occupation in the first few years. From the point of view of time cover values increased in a pronounced manner during the first few years and this increase was stabilized from the fourth year. However, from this moment on a greater increase in this species' maximum height is evident. The response to ploughing is slower according to recovery mechanism (seedlings). Recovery is comparatively less in the area where there is no strong competition than in that where it exists between species. RésuméDans deux communautés de bruyère dominées par Erica australis on a étudié la réponse de cette espèce aux traitements expérimentaux de brûlage, coupe et labour. Ces traitements représentent les actions les plus fréquentes que l'homme a exercé sur ces communautés de bruyère tout au long de l'histoire. De la même façon, on a fait la comparaison de la réponse de cette espèce quand elle se trouve dans une communauté dominée principalement par elle, où elle n'y a pas une forte compétition entre les espèces, avec la réponse quand elle se situe dans une communauté où plusieurs espèces coexistent. On observe que la réponse aux traitements de brûlage et coupe est très semblable, en présentant une occupation spatiale très rapide pendant les premières années. Du point de vue temporel, leurs valeurs de couverture augmentent de façon plus prononcée pendant les premières années, et c'est à partir de la quatrième année que ce développement se stabilise. Cependant, c'est à partir de ce moment là qu'on remarque une augmentation plus grande en ce qui concerne la hauteur maximale de cette espèce. La réponse au traitement de labour est plus lente en relation avec la régénération par semences. L'effet de la compétition se traduit par une récupération qui suit un mode d'augmentation opposé à la situation originaire. Dans la surface où il n'existe pas une forte compétition, la récupération est comparativement plus faible que dans la station où il y existait une compétition entre les espèces.Mots clés: Maquis, Mécanismes reproductives, Perturbations expérimentales, Régénération, Rejets     

In vitro interactions between ectomycorrhizal fungi and ericaceous plants

In view of the close association between ericaceous shrubs and ectomycorrhizal trees in forest ecosystems, the interaction between ectomycorrhizal basidiomycetes and the hair roots of four typical ericoid mycorrhizal hosts was investigated in vitro. Seedlings of Vaccinium myrtillus, V. vitis-idaea, V. macrocarpon and Calluna vulgaris were inoculated with each of four ectomycorrhizal basidiomycetes from different phylogenetic groups (Laccaria bicolor, Lactarius musteus, Suillus variegatus and Tomentellopsis submollis) in a low carbon and nutrient agar-cellophane culture system. Two ericoid mycorrhizal Helotiales ascomycetes (Meliniomyces bicolor in the Rhizoscyphus ericae aggregate and a mycobiont out of the Rhizoscyphus ericae aggregate) were included for comparison. Interactions between fungi and hair roots ranged from neutral to surface attachment, and the formation of intracellular hyphal coils. Root and shoot responses to inoculation were different between the host/fungus combinations. The ectomycorrhizal fungus L. bicolor formed extensive intracellular colonization, spreading cell-to-cell with multiple hyphal entry points and intracellular hyphal coils with single entry points in C. vulgaris and V. macrocarpon epidermal cells respectively, however, no significant effects on plant growth were detected. Meliniomyces bicolor formed intracellular hyphal coils in the epidermal cells of V. myrtillus and V. macrocarpon but not the other host spp. The M. bicolor isolate stimulate V. myrtillus root length about 2.5 times. Interestingly, although the unknown ascomycete strain out of the Rhizoscyphus ericae aggregate formed intracellular hyphal coils in epidermal cells of all host plants, it suppressed the growth of C. vulgaris, V. myrtillus, and V. vitis-idaea but not to V. macrocarpon. Further and more detailed experimentation under more ecological realistic conditions for a longer period of time is needed.     

Differential abundance of IGF1, bile acids,and the genes involved in their signaling in the dominant follicle microenvironment of lactating cows and nulliparous heifers

It is well documented that incidence of fertility problems is high in lactating cows but not in heifers of the same genetic merit. Understanding the metabolic and molecular differences between fertile heifers and relatively infertile lactating cows will help us understand the pathogenesis of infertility in dairy cows. Follicular waves in lactating cows (30–50 days in milk; n = 12) and heifers (n = 10) were synchronized by ultrasound-guided follicle ablation. Follicular fluid and granulosa cells of the dominant follicle were collected by ultrasound-guided aspiration along with blood sampling on Day 6 after synchronization. Dominant and subordinate follicles were larger in lactating cows than in heifers. Metabolic stress in lactating cows was evidenced by lower glucose and higher ß-hydroxy butyric acid compared with heifers. Insulin-like growth factor 1 signaling was reduced in the dominant follicle in lactating cows through reduced insulin-like growth factor 1 concentrations in plasma and follicular fluid of the dominant follicle, and reduced expression of pregnancy-associated plasma protein A (PAPPA) in their granulosa cells. We also found increased levels of total bile acids in the follicular fluid of the dominant follicle of lactating cows compared with heifers. Granulosa cells of the dominant follicle had higher expression of SLC10A2 and GPBAR1 (bile acid transporter and receptor, respectively) in lactating cows. These novel data are indicative of increased bile acid signaling within the dominant follicles of lactating cows compared with heifers. Overall, we demonstrate in the present study the metabolic, endocrine, and molecular differences within the microenvironment of the dominant follicles in lactating cows and heifers. These differences in follicular microenvironment may contribute toward abnormal ovarian function in lactating dairy cows.     

Protected areas buffer the Brazilian semi‐arid biome from climate change

The Caatinga is a botanically unique semi‐arid ecosystem in northeast Brazil whose vegetation is adapted to the periodic droughts that characterize this region. However, recent extreme droughts events caused by anthropogenic climate change have challenged its ecological resilience. Here, we evaluate how deforestation and protection status affect the response of the Caatinga vegetation to drought. Specifically, we compared vegetation responses to drought in natural and deforested areas as well as inside and outside protected areas, using a time‐series of satellite‐derived Normalized Difference Vegetation Index (NDVI) and climatic data for 2008–2013. We observed a strong effect of deforestation and land protection on overall vegetation productivity and in productivity dynamics in response to precipitation. Overall, deforested areas had significantly lower NDVI and delayed greening in response to precipitation. By contrast, strictly protected areas had higher productivity and considerable resilience to low levels of precipitation, when compared to sustainable use or unprotected areas. These results highlight the importance of protected areas in protecting ecosystem processes and native vegetation in the Caatinga against the negative effects of climate change and deforestation. Given the extremely small area of the Caatinga currently under strict protection, the creation of new conservation areas must be a priority to ensure the sustainability of ecological processes and to avoid further desertification.