Reverse spillover of SARS-CoV-2 from human to wild animals

<正>The heavily transmitted and mutated SARS-CoV-2 has constitutes a sustained threat to global health. A recent article published in Nature, firstly provided solid evidence confirming the cross-species transmission of the severe acute respiratory syndrome coronavirus 2(SARS-CoV-2) from human to free-ranging white-tailed deer(Hale et al., 2022).More importantly, circulation of SARS-CoV-2 among deer rapidly resulted into new phylogenetic clades of deer-only viruses which were believed linkin...     

基于mtDNA D-loop分析高原鳅群体遗传多样性和系统发育

本研究以高原鳅属6个群体共82尾个体的线粒体DNA D-loop高变区为标记,采用分子生物信息学方法分析其遗传多样性及系统发育关系.结果表明,在570 bp的mtDNA D-loop中共检测到149个多态位点,由此界定了 39个单倍型.在6个群体中,单倍型多样度(Hd)由高到低依次为细尾高原鳅(T.stenura)(0...     

承灾脆弱性视角下的生态系统服务需求评估及供需空间匹配

生态系统服务供需空间分布格局及匹配关系是生态系统服务领域的热点问题。将生态系统服务聚焦于增强城市系统承受自然灾害的能力和恢复力功能上,引入承灾脆弱性表征生态系统服务需求。选择首批经济特区之一的珠海市为案例研究区,土壤保持服务为供需分析的对象,利用承灾脆弱性评价城市系统及居民的服务需求并刻画需求的空间异质性,采用基于"3S技术"的In VEST模型定量评估服务供给潜力,从流域与镇、街道两种尺度分析生态系统服务供需匹配状况,以期为市级土地利用管理、景观格局优化及城市经济建设提供建议。研究结果表明:根据供需空间匹配状况,珠海市包含高供给高需求、低供给高需求、低供给低需求与高供给低需求四种供需匹配类型。珠海市土壤保持服务供需空间错位状况较为严重,人口密集的城镇区域需求极高但供给严重缺乏,部分生态源地的高供给无法惠及周边区域人口;兼顾经济建设与生态保护的高供给高需求地区仅占全域面积的8.7%;以农业导向且经济发展缓慢的低供给低需求地区分布较广。是对生态系统服务供给与需求的空间异质性刻画及供需空间匹配的重要尝试,为城市建设和生态管理提供参考。     

在黄土丘陵区土质路面种草

土质道路水土流失是所有人工生态系统中最严重的土地利用类型,土壤侵蚀模数是相同条件下林地的250倍,农村道路修筑破坏了区域生态景观的完整性,为景观生态修复理论与技术研究提供了重要的实验场地。广大山区农村田间地块道路在种植和收获季节以外长期处于闲置状态,这为植物的种植和生长提供了可能。1997～2001年,以中国黄土丘陵区陕西省延安市小砭沟小流域农田道路为背景,以防止和减轻路面汇流引发的水土流失对道路的破坏和修复农村道路景观生态系统为目的,采用小区径流监测、施工统计和定点观测的方法,在路面进行了为期5a的种草实验。研究结果显示,农田作业道路路面不仅可以种草,而且具有一定生态经济价值,在条播下,胡枝子、小冠花、无芒雀麦每km年产值可达1068.88～3150.27元;同时,路面牧草可承受适度的通行压力,禾本科牧草一般可承受300t·次/a以下车辆碾压;道路种植禾本科牧草后,除有机质外,土壤中其它营养成份均有不同程度的亏损,因此有必要补充各种肥料延长路面牧草使用年限和提高牧草防蚀能力;路面种草后径流量减少46.15%～69.30%,土壤侵蚀量减少54.53%～77.80%,建设成本仅为石子路的27.69%～35.99%,维护费用仅为土质道路的30.52%,是一种经济可行的技术途径。道路种草后,路面雨季泥泞、旱季尘土飞扬的劣质景观被蜿蜒的绿色道路景观所取代,形似镶嵌在绵延山谷中的绿飘带,这无论在理论还是技术方面都是生态修复学和景观生态学研究的重要方向之一。     

植物-菌根真菌联合修复重金属污染土壤

菌根是菌根真菌侵染植物根系后在植物根部形成的共生结构。菌根技术作为一种生物强化技术应用于重金属污染土壤的植物修复已引起研究者的广泛关注。目前大量研究表明菌根能强化植物对重金属的转运、富集及根系稳定化过程,并通过促进营养物质的吸收利用、稳定细胞内氧化还原平衡、调控抗逆性相关基因的表达以及改善根际微生态环境等方式提升寄主植物的抗逆性。本文在介绍菌根真菌在植物修复重金属污染的联合过程中的作用效应及机制的基础上,分析了目前限制该技术应用的瓶颈问题以及未来的研究方向,为植物-菌根真菌联合修复的推广应用提供理论基础。     

新疆棉花黄萎病菌拮抗细菌的分离、筛选与鉴定

【背景】棉花黄萎病是由大丽轮枝菌(Verticillium dahliae Kleb.)引起的一种世界性病害,近年来对该病害的生物防治因具有环境友好和人畜安全的特性而倍受关注。【目的】筛选棉花黄萎病高效拮抗细菌并对其进行鉴定,为棉花黄萎病的生物防治扩充菌种资源。【方法】采用稀释涂布平板法分离细菌,并进行拮抗细菌的初筛和复筛,通过形态特征、生理生化特征和16S rRNA基因序列分析对筛选到的细菌进行鉴定,确定其分类地位。【结果】初筛分离到535株对病原菌具有拮抗作用的细菌,并选取了108株拮抗细菌进行复筛,最终筛选到了4株优势拮抗细菌。通过形态观察、生理生化特征和16SrRNA基因序列分析,将菌株BHZ-29、SHT-15、SHZ-24和SMT-24分别鉴定为贝莱斯芽孢杆菌(Bacillusvelezensis)、枯草芽孢杆菌斯皮兹仁亚种(Bacillus subtilis subsp. spizizenii)、萎缩芽孢杆菌(Bacillus atrophaeus)和香草芽孢杆菌(Bacillus vanillea)。【结论】获得了4株高效拮抗细菌,并且首次报道了香草芽孢杆菌对棉花黄萎病菌具有抑制作用。     

中国西南喀斯特地区植被变化时空特征及其成因

2000年以来,国家在中国西南喀斯特地区开展一系列生态治理工程,该地区退化生态系统得到一定程度的恢复,而2008年开展石漠化综合治理工程以来该地区的植被覆盖和生产力如何变化尚不清楚。本研究利用遥感增强型植被指数(EVI)和总初级生产力(GPP)数据,研究2000—2015年西南喀斯特地区植被EVI年均值和GPP年总量的时空变化特征,重点探讨2008年以来石漠化综合治理工程、气候变化等因素对植被覆盖及生长的影响,进而评估石漠化综合治理工程的成效。结果表明,2000—2015年西南喀斯特地区植被EVI总体显著增加,其中2008—2015年植被EVI均值和变化率分别比2000—2007年高6.9%和85.7%,EVI显著增加的区域占西南喀斯特地区的13.4%;该区域GPP年总量亦呈显著增加趋势(20.58 g C m-2a-1)。2008—2015年气温和降水对植被EVI变化趋势的贡献仅占28.3%,退耕还林还草等生态恢复措施、大气CO2浓度、大气氮沉降的增加可能是该区域植被覆盖显著增加的主要贡献因子。在100个首批石漠化综合治理试点县中,大部分试点县植被EVI的变化趋势受非气候因子的影响,其中治理面积大的县受非气候因子的影响显著高于治理面积小的县,表明石漠化综合治理工程的实施有效地促进了试点县植被覆盖的增加。     

Cold-induced phase separation for the simple and reliable extraction of sex hormones for subsequent LC-MS/MS analysis

Sex hormones, including androgens, estrogens, and progestogens, are important biomarkers for various diseases. Quantification of sex hormones is typically conducted by LC-MS/MS. At present, most methods require liquid-liquid extraction or solid phase extraction for sample preparation. However, these pretreatments are prone to compromise LC-MS/MS throughput. To improve on the current standard practices, we investigated cold-induced phase separation for sex hormone extraction. After protein precipitation with acetonitrile and adjusting the solution constitution with water, samples were stored at ?30°C for 10 min to generate two distinct phases: an acetonitrile-rich layer on top of a water-rich layer. During this process, the hydrophobic sex hormones spontaneously separate into the upper layer. This simple and reliable cold-induced phase separation-based LC-MS/MS methodology was used here to simultaneously detect estrone, estradiol, estriol, testosterone, androstenedione, dehydroepiandrosterone, progesterone, and 17-hydroxyprogesterone in serum. Validation of this method indicated satisfactory performance, including acceptable linearity, accuracy, precision, and tractability. Compared with the mainstream liquid-liquid extraction-based method, this new method exhibits significant progress in throughput, which shortens the time cost of sample preparation from 90 to 40 min. We propose that this method can be an excellent alternative for sex hormone analysis in routine clinical laboratories.     

In-depth Profiling and Quantification of the Lysine Acetylome in Hepatocellular Carcinoma with a Trapped Ion Mobility Mass Spectrometer

Hepatocellular carcinoma (HCC) is the third most common cause of cancer-related death worldwide with limited therapeutic options. Comprehensive investigation of protein posttranslational modifications in HCC is still limited. Lysine acetylation is one of the most common types of posttranslational modification involved in many cellular processes and plays crucial roles in the regulation of cancer. In this study, we analyzed the proteome and K-acetylome in eight pairs of HCC tumors and normal adjacent tissues using a timsTOF Pro instrument. As a result, we identified 9219 K-acetylation sites in 2625 proteins, of which 1003 sites exhibited differential acetylation levels between tumors and normal adjacent tissues. Interestingly, many novel tumor-specific K-acetylation sites were characterized, for example, filamin A (K865), filamin B (K697), and cofilin (K19), suggesting altered activities of these cytoskeleton-modulating molecules, which may contribute to tumor metastasis. In addition, we observed an overall suppression of protein K-acetylation in HCC tumors, especially for enzymes from various metabolic pathways, for example, glycolysis, tricarboxylic acid cycle, and fatty acid metabolism. Moreover, the expression of deacetylase sirtuin 2 (SIRT2) was upregulated in HCC tumors, and its role of deacetylation in HCC cells was further explored by examining the impact of SIRT2 overexpression on the proteome and K-acetylome in Huh7 HCC cells. SIRT2 overexpression reduced K-acetylation of proteins involved in a wide range of cellular processes, including energy metabolism. Furthermore, cellular assays showed that overexpression of SIRT2 in HCC cells inhibited both glycolysis and oxidative phosphorylation. Taken together, our findings provide valuable information to better understand the roles of K-acetylation in HCC and to treat this disease by correcting the aberrant acetylation patterns.     

Cryo-EM structure of glycoprotein C from Crimean-Congo hemorrhagic fever virus

Crimean-Congo hemorrhagic fever virus (CCHFV) is a causative agent of serious hemorrhagic diseases in humans with high mortality rates. CCHFV glycoprotein Gc plays critical roles in mediating virus-host membrane fusion and has been studied extensively as an immunogen. However, the molecular mechanisms involved in membrane fusion and Gc-specific antibody-antigen interactions remain unresolved largely because structural information of this glycoprotein is missing. We designed a trimeric protein including most of the ectodomain region of Gc from the prototype CCHFV strain, IbAr10200, which enabled the cryo-electron microscopy structure to be solved at a resolution of 2.8 ?. The structure confirms that CCHFV Gc is a class II fusion protein. Unexpectedly, structural comparisons with other solved Gc trimers in the postfusion conformation revealed that CCHFV Gc adopted hybrid architectural features of the fusion loops from hantaviruses and domain III from phenuiviruses, suggesting a complex evolutionary pathway among these bunyaviruses. Antigenic sites on CCHFV Gc that protective neutralizing antibodies target were mapped onto the CCHFV Gc structure, providing valuable information that improved our understanding of potential neutralization mechanisms of various antibodies.