Elastic priors to dynamically borrow information from historical data in clinical trials

Use of historical data and real-world evidence holds great potential to improve the efficiency of clinical trials. One major challenge is to effectively borrow information from historical data while maintaining a reasonable type I error and minimal bias. We propose the elastic prior approach to address this challenge. Unlike existing approaches, this approach proactively controls the behavior of information borrowing and type I errors by incorporating a well-known concept of clinically significant difference through an elastic function, defined as a monotonic function of a congruence measure between historical data and trial data. The elastic function is constructed to satisfy a set of prespecified criteria such that the resulting prior will strongly borrow information when historical and trial data are congruent, but refrain from information borrowing when historical and trial data are incongruent. The elastic prior approach has a desirable property of being information borrowing consistent, that is, asymptotically controls type I error at the nominal value, no matter that historical data are congruent or not to the trial data. Our simulation study that evaluates the finite sample characteristic confirms that, compared to existing methods, the elastic prior has better type I error control and yields competitive or higher power. The proposed approach is applicable to binary, continuous, and survival endpoints.     

A meta-analysis on morphological,physiological and biochemical responses of plants with PGPR inoculation under drought stress

Plant growth-promoting rhizobacteria (PGPR) can help plants to resist drought stress. However, the mechanisms of how PGPR inoculation affect plant status under drought remain incompletely understood. We performed a meta-analysis of plant response to PGPR inoculation by compiling data from 57 PGPR-inoculation studies, including 2, 387 paired observations on morphological, physiological and biochemical parameters under drought and well-watered conditions. We compare the PGPR effect on plants performances among different groups of controls and treatments. Our results reveal that PGPR enables plants to restore themselves from drought-stressed to near a well-watered state, and that C4 plants recover better from drought stress than C3 plants. Furthermore, PGPR is more effective underdrought than well-watered conditions in increasing plant biomass, enhancing photosynthesis and inhibiting oxidant damage, and the responses of C4 plants to the PGPR effect was stronger than that of C3 plants under drought conditions. Additionally, PGPR belonging to different taxa and PGPR with different functional traits have varying degrees of drought-resistance effects on plants. These results are important to improve our understanding of the PGPR beneficial effects on enhanced drought-resistance of plants.     

Effects of ROS and caspase-3-like protein on the growth and aerenchyma formation of Potamogeton perfoliatus stem

Protoplasma - Aerenchyma formation plays an important role in the survival of Potamogeton perfoliatus in submerged environment. To understand the regulatory role of reactive oxygen species (ROS)...     

Comment on “Is Yuan in China’s Three Gorges a Gibbon or a Langur?”

International Journal of Primatology -     

Effect of light intensity and ammonium-N on carotenogenesis ofTrentepohlia odorata andDunaliella bardawil

AxenicTrentepohlia odorata was cultured at three different NH₄Cl levels (3.5 × 10^–2, 3.5 × 10^–3, 3.5 × 10^–4 M) and three different light intensities (48, 76, 122 µmol m^–2 s^–1). Chloride had no effect on growth over this range of concentration. High light intensity and high NH₄Cl concentration enhanced the specific growth rate. The carotenoid content increased under a combination of high light intensity and low N concentration. WhenD. bardawil was exposed to the same combination of growth conditions, there was an increase in its carotenoid content. The light saturation and the light inhibition constants (K _s andK _i, respectively) for growth, and the saturation constant (K _m) for NH₄Cl were determined. TheK _s andK _i values were higher inT. odorata (66.7 and> 122 mol m^–2 s^–1, respectively) than inD. bardawil (5.1 and 14.7 µmol m^–2 s^–1, respectively). TheK _m value determined at 122 µmol m^–2 s^–1, however, was lower inT. odorata (0.048 µM) than inD. bardawil (0.062 µM).Author for correspondence     

酿酒酵母合成木栓酮及其衍生物的研究现状及展望

木栓酮及其衍生物在植物中普遍存在且种类繁多,具有丰富的生理药理学活性。木栓酮衍生物是以木栓酮为骨架经细胞色素氧化酶P450(cytochromeP450,CYP450)及UDP葡萄糖醛酸转移酶(UDP-glucuronosyltransferase, UGT)修饰而来。植物中天然木栓酮及其衍生物的含量极低,传统的萃取分离和化学合成效率低、能耗高且污染环境,因此,利用酿酒酵母作为宿主菌生产木栓酮及其衍生物是一种高效且环保的策略。本文从增加前体含量、提高酶活性和产物合成的亚细胞定位等方面介绍并展望了木栓酮在酿酒酵母中高效生产的策略,并介绍了目前几种常见的木栓酮衍生物研究现状,从根据碳骨架相似性挖掘CYP450、蛋白质工程改造CYP450和合成代谢基因簇的挖掘等方面展望了木栓酮衍生物的合成途径解析的新思路。     

Comprehensive Evaluation and Screening for 1,2,4-Trichlorobenzene Tolerance in Rice Cultivars at Different Growth Stages

Journal of Plant Growth Regulation - 1,2,4-trichlorobenzene (1,2,4-TCB) pollution in fields has become a potential threat to rice growth, yet little is known about the different response of many...     

海水酸化及升温对刺参生长及能量收支的影响

以东亚浅海生态系统中的关键种——刺参(Apostichopus japonicus)为实验对象,研究了CO₂驱动的海水酸化及升温对其生长及能量收支的影响。实验设置对照组(大连近海水温, pCO₂ 400μatm)、升温组(大连近海水温+3℃, pCO₂ 400μatm)、酸化组(大连近海水温, pCO₂ 1100μatm)和酸化升温组(大连近海水温+3℃,pCO₂ 1100μatm)。结果表明:与对照组相比,温度升高3℃对刺参的生长无显著影响;酸化组刺参的特定生长率最低,较对照组降低0.19%/d,个体体重的变异系数最大;酸化升温组刺参的终末体重和特定生长率与对照组相较无显著差异,但其摄食率和排粪率均显著高于对照组。升温组和酸化组的刺参能量的分配模式与对照组相比未发生明显改变,但酸化升温组刺参的能量分配模式发生显著变化,其粪便能所占摄食能的比例显著升高。研究表明,海水酸化抑制了刺参的生长但未改变其能量的分配,生长的降低主要取决于摄食减少;而海水酸化与温度升高的共同作用可能会通过...     

苄基异喹啉类化合物 D20抑制钙调素激活磷酸二酯酶的研究

苄基异喹啉化合物是一类钙调素拮抗剂.对新合成的双苄基异喹啉化合物 D₂₀对钙调素依赖的磷酸二酯酶的抑制作用进行了研究,IC₅₀=5μmol/L,表明其拮抗作用大于三氟啦嗪,是强的拮抗剂.荧光分析表明,钙调素与化合物 D₂₀的结合常数为2.64(μmol/L)^-1,一个化合物 D₂₀分子与两个钙调素分子结合,并显示了结合方向性及空间位阻影响.