The Anti-Apoptotic and Cardioprotective Effects of Salvianolic Acid A on Rat Cardiomyocytes following Ischemia/Reperfusion by DUSP-Mediated Regulation of the ERK1/2/JNK Pathway

The purpose of this study was to observe the effects of salvianolic acid A (SAA) pretreatment on the myocardium during ischemia/reperfusion (I/R) and to illuminate the interrelationships among dual specificity protein phosphatase (DUSP) 2/4/16, ERK1/2 and JNK pathways during myocardial I/R, with the ultimate goal of elucidating how SAA exerts cardioprotection against I/R injury (IRI). Wistar rats were divided into the following six groups: control group (CON), I/R group, SAA+I/R group, ERK1/2 inhibitor PD098059+I/R group (PD+I/R), PD+SAA+I/R group, and JNK inhibitor SP600125+I/R group (SP+I/R). The cardioprotective effects of SAA on the myocardium during I/R were investigated with a Langendorff device. Heart rate (HR), left ventricular systolic pressure (LVSP), left ventricular end-diastolic pressure (LVEDP), maximum rate of ventricular pressure rise and fall (±dp/dt_max), myocardial infarction areas (MIA), lactate dehydrogenase (LDH), and cardiomyocytes apoptosis were monitored. To determine the crosstalk betwee JNK and ERK1/2 via DUSP2/4/16 with SAA pretreatment, siRNA-DUSP2/4/16 were performed. The expression levels of Bcl-2, Bax, caspase 3, p-JNK, p-ERK1/2 and DUSP2/4/16 in cardiomyocytes were assayed by Western blot. Our results showed that LDH, MIA and cell apoptosis were decreased, and various parameters of heart function were improved by SAA pretreatment and SP application. In the I/R group, the expression levels of p-ERK1/2 and DUSP4/16 were not significantly different compared with the CON group, however, the protein expression levels of p-ERK1/2, Bcl-2 and DUSP4/16 were higher, while p-JNK, Bax, caspase 3 and DUSP2 levels were reduced among the SAA+I/R, PD+SAA+I/R and SP+I/R groups. The above indices were not significantly different between the SAA+I/R and SP+I/R groups. Compared with the SAA+I/R group, p-ERK1/2 was increased and p-JNK was decreased in the SAA+si-DUSP2+I/R, however, p-ERK was downregulated and p-JNK was upregulated in SAA+si-DUSP4+I/R group. SAA exerts an anti-apoptotic role against myocardial IRI by inhibiting DUSP2-mediated JNK dephosphorylation and activating DUSP4/16-mediated ERK1/2 phosphorylation.     

RNase H is an exo- and endoribonuclease with asymmetric directionality,depending on the binding mode to the structural variants of RNA:DNA hybrids

RNase H is involved in fundamental cellular processes and is responsible for removing the short stretch of RNA from Okazaki fragments and the long stretch of RNA from R-loops. Defects in RNase H lead to embryo lethality in mice and Aicardi-Goutieres syndrome in humans, suggesting the importance of RNase H. To date, RNase H is known to be a non-sequence-specific endonuclease, but it is not known whether it performs other functions on the structural variants of RNA:DNA hybrids. Here, we used Escherichia coli RNase H as a model, and examined its catalytic mechanism and its substrate recognition modes, using single-molecule FRET. We discovered that RNase H acts as a processive exoribonuclease on the 3′ DNA overhang side but as a distributive non-sequence-specific endonuclease on the 5′ DNA overhang side of RNA:DNA hybrids or on blunt-ended hybrids. The high affinity of previously unidentified double-stranded (ds) and single-stranded (ss) DNA junctions flanking RNA:DNA hybrids may help RNase H find the hybrid substrates in long genomic DNA. Our study provides new insights into the multifunctionality of RNase H, elucidating unprecedented roles of junctions and ssDNA overhang on RNA:DNA hybrids.     

脱发相关差异表达基因的生物信息学分析

利用生物信息学方法分析脱发相关差异表达基因,有望帮助了解脱发发生发展的分子机制。本研究从NCBI的子数据库GEO中选择基因表达谱GSE45512和GSE45513数据集,利用R语言limma工具包,筛选出两个物种斑秃样本与正常样本的共同显著差异表达基因。对这部分基因进行功能注释和蛋白互作网络分析,同时对全部差异表达基因进行基因集富集分析。结果发现,人头皮斑秃样本共筛选出225个差异表达基因;C3H/HeJ小鼠自发斑秃皮肤样本共筛选出337个差异表达基因;两个物种的共同显著差异表达基因有23个。GO功能富集分析和蛋白互作网络分析显示,这部分差异基因显著富集于免疫相关功能,并且彼此间存在蛋白互作关系。基因集富集分析显示两个物种的差异基因都能显著富集到趋化因子信号通路、细胞因子受体相互作用、金葡菌感染及抗原加工与呈递通路;而且人的下调差异基因不仅映射到了人类表型数据库的脱发表型,也映射到皮肤附属物病理相关表型。综上所述,本研究通过生物信息方法分析脱发皮肤组织与正常皮肤组织的差异表达基因,最终筛选出23个在人和小鼠中共同存在的显著差异表达基因;此外,分析发现脱发与免疫过程及皮肤附属物病变密切相关,这些结果为脱发的诊断和治疗提供了新思路。     

利用乳酸乳球菌AcmA表面展示b-1, 3-1, 4-葡聚糖酶

采用PCR扩增乳酸乳球菌(Lactococcus lactis)MB191菌株的全长肽聚糖水解酶基因acmA, 通过C-末端融合构建了与绿色荧光基因gfp的融合基因acmA-gfp, 再连接于表达载体pMG36k上后得到可组成型表达AcmA-GFP融合蛋白的重组质粒pMB137, 然后将该质粒电转化导入到乳酸乳球菌AS1.2829中获得重组菌MB137。经SDS-PAGE检测, 重组菌MB137可表达预期的分子量约74 kD的蛋白质。Western blotting、细胞分级分离组分的荧光活性测定和特异GFP二抗标记的流式细胞仪检测证实GFP被成功锚定在重组菌细胞表面, 被锚定蛋白约占总表达融合蛋白的35%。进一步通过从枯草芽胞杆菌BF7658基因组中扩增去信号肽序列的b-1, 3-1, 4葡聚糖酶基因gls, 来取代pMB137中的gfp, 得到携带融合基因acmA-gls的重组质粒pMB138, 经导入到乳酸乳球菌AS1.2829后得到重组菌MB138, 其全细胞b-1, 3-1, 4-葡聚糖水解酶的活性约为12 U/mL菌液, 明显高于对照菌株。     

改变碳输入对亚热带人工林土壤微生物生物量和群落组成的影响

通过在亚热带杉木(Cunninghamia lanceolata)和米老排(Mytilaria laosensis)人工林中设置互换凋落物、去除凋落物、去除凋落物+去除根系和对照处理来分析改变地上、地下碳输入对人工林土壤微生物生物量和群落组成的影响。结果显示,改变地上、地下碳输入对土壤微生物生物量碳、氮的影响因树种而异。在米老排林中,土壤微生物生物量不受碳源的限制。而在杉木林中,加入米老排凋落物、去除凋落物和去除凋落物+去除根系3种处理中土壤微生物生物量碳、氮具有明显增加的趋势。磷脂脂肪酸分析结果显示,杉木林中,添加高质量的米老排凋落物后,革兰氏阳性细菌、阴性细菌、丛枝菌根真菌、放线菌和真菌群落生物量分别显著增加了24%、24%、53%、25%、28%,革兰氏阴性细菌和丛枝菌根真菌的相对丰度均有显著增加。与对照相比,杉木林中去除凋落物后革兰氏阳性细菌、阴性细菌、丛枝菌根真菌、放线菌和真菌群落生物量分别显著增加了22%、29%、44%、25%、52%,真菌与细菌比值显著增加了21%。但是,去除凋落物+去除根系处理对两个树种人工林土壤微生物群落组成均无显著影响。米老排和杉木林土壤微生物生物量碳、氮的季节变化格局不同,土壤养分有效性可能是驱动土壤微生物生物量季节变化的主要因子。未来研究需要关注凋落物和根系在不同树种人工林中对土壤微生物群落的相对贡献。     

Two stochastic processes shape diverse senescence patterns in a single‐cell organism

Despite advances in aging research, a multitude of aging models, and empirical evidence for diverse senescence patterns, understanding of the biological processes that shape senescence is lacking. We show that senescence of an isogenic Escherichia coli bacterial population results from two stochastic processes. The first process is a random deterioration process within the cell, such as generated by random accumulation of damage. This primary process leads to an exponential increase in mortality early in life followed by a late age mortality plateau. The second process relates to the stochastic asymmetric transmission at cell fission of an unknown factor that influences mortality. This secondary process explains the difference between the classical mortality plateaus detected for young mothers’ offspring and the near nonsenescence of old mothers’ offspring as well as the lack of a mother–offspring correlation in age at death. We observed that lifespan is predominantly determined by underlying stochastic stage dynamics. Surprisingly, our findings support models developed for metazoans that base their arguments on stage‐specific actions of alleles to understand the evolution of senescence. We call for exploration of similar stochastic influences that shape aging patterns beyond simple organisms.     

巨桉凋落叶分解对牧草生长和光合特性及土壤酶活性的影响

采用盆栽试验,研究了巨桉凋落叶(0、50、100、150g凋落叶分别与8kg土壤混合)在分解过程中对牧草老芒麦和红三叶生长和光合生理特性的影响以及几种土壤酶活性的动态响应。结果显示:(1)两种牧草的草层高和生物量均随土壤中凋落叶剂量增大而减小,草层高受抑制的程度随分解时间延长而先强后弱。(2)凋落叶处理促进了老芒麦的净光合速率(Pn),使其对光和CO2的适应范围增大,表观量子效率(AQY)(50g处理除外)和羧化速率(CE)升高,对红三叶的光适应范围也有促进作用,并在低剂量(50g)下提升其Pn、AQY和CE,但降低其CO2适应范围;两种牧草暗呼吸速率(Rd)或光呼吸速率(Rp)几乎在各凋落叶处理下均高于CK。(3)红三叶的生长和光合生理受到的化感综合效应(平均0.317)小于老芒麦(平均0.380),表现出更强的抗性。(4)凋落叶在分解到20~60d时明显促进了土壤磷酸酶活性,在20~40d时明显促进了蔗糖酶活性,之后促进作用减弱,并与两种受体草层高受抑制作用的动态变化趋势一致;过氧化氢酶和脲酶活性受影响的程度较小。研究认为,巨桉凋落叶分解,通过释放化感物质直接或间接地作用于受体,尽管受体可能通过提高对光和CO2的利用能力来应对化感胁迫,但其呼吸消耗增大,生长始终表现为受到抑制。     

正交设计优化微波辅助测定延胡索叶总生物碱含量

通过微波辅助提取的方式,以延胡索叶总生物碱含量为考察指标,通过单因素试验和正交试验对总生物碱提取方法进行优化。重点考察了微波提取温度、时间、料液比、提取缓冲液pH值等因素对延胡索叶总生物碱得率的影响。各因素对延胡索叶总生物碱提取量的影响大小依次为:提取缓冲液pH值料液比提取温度。其最佳的提取方法为:提取缓冲液pH值为1. 0,料液比1∶100,提取温度60℃,提取时间20 min。在此条件下,叶总生物碱含量为25. 910 mg/g。利用微波辅助提取延胡索叶中总生物碱,不仅耗时短,效率高,而且操作简单、稳定,为延胡索叶总生物碱含量测定提供一定的技术支持。     

Molecular profiling of single cells and tissue specimens with quantum dots

Quantum dots are tiny light-emitting particles on the nanometer scale. They are emerging as a new class of biological label with properties and applications that are not available with traditional organic dyes and fluorescent proteins. Recent advances, as reported in Science and Nature Biotechnology, have led to quantum dot bioconjugates that are highly luminescent and stable. These bioconjugates raise new possibilities for studying genes, proteins and drug targets in single cells, tissue specimens and even in living animals.