Delayed cytoprotection induced by hypoxic preconditioning in cultured neonatal rat cardiomyocytes: role of GRP78

Hypoxic preconditioning (HPC) has been well demonstrated to have potent protective effects in many cell types; however, the mechanisms responsible for this phenomenon are not fully understood. Recently, glucose-regulated protein 78 (GRP78), an inducible molecular chaperon, was indicated to be associated with ischemic preconditioning. We hypothesized that HPC protects cardiomyocytes against hypoxia by inducing GRP78 in cultured neonatal rat cardiomyocytes. HPC was induced by exposing cardiomyocytes to brief hypoxia (1% O(2), 30 min) followed by reoxygenation. GRP78 was expressed constitutively in cultured cardiomyocytes and its expression was enhanced at 12 h, peaked at 24 h (207.3+/-23.6% of the baseline), and was sustained for up to 72 h after HPC. Twenty-four hours after HPC, the myocytes were subjected to prolonged hypoxia (1% O(2), 12 h). The lactic dehydrogenase (LDH) release and malondialdehyde (MDA) content were reduced, while cell viability and superoxide dismutase (SOD) activity were increased in the preconditioned cells compared with the non-HPC cells. The GRP78 protein level was higher in cells exposed to both HPC and hypoxia than in the cells exposed to HPC alone or hypoxia alone. Heat shock protein 70 (HSP70) was induced in parallel by late HPC. Transfection of GRP78 antisense oligonucleotides blocked GRP78 expression but not HSP70, resulting in attenuated cardioprotection afforded by late HPC. Furthermore, inducing GRP78 by gene transfer protected cardiomyocytes from hypoxic injury. These findings demonstrate that the induction of GRP78 partially mediates the late HPC, suggesting that GRP78 is a novel mechanism responsible for the late cytoprotection of HPC.     

中国云南畸螽属一新种(直翅目,蛩螽科)

报道中国云南畸螽属1新种,即矛畸螽Teratura hastata sp．nov．。新种与Terahra cincta（Bev-Bienko,1962）和T．pulchella Gorochov ＆ Kang,2005相似,主要区别：雄性尾须腹叶明显扩展,肛上板与第10腹节背板端部愈合,其基部中央具深的纵沟,端半部耳状隆起,侧端部具一些粗刺,亚端部侧面着生1对端部较钝的戟形突。该新种与T.paracincta Gorochov＆Kang,2005的主要区别是体色和雌性下生殖板明显不同。 正模♂,云南泸水,1280m,9Apr．2002,易传辉采;副模1♀,云南泸水,830m,7Apr．2002,宋劲忻采,1♀,云南腾冲,2240m,1 May2002,欧晓红采。     

隆肛蛙属种群形态量度分析

对隆肛蛙属Feirana中隆肛蛙F.quadrana和太行隆肛蛙F.taihangnicus的15个种群565只标本的28项形态性状进行了测量,并运用典型判别分析法对其进行分析,分析结果表明:1)太行隆肛蛙和隆肛蛙的形态差异明显,形态度量信息支持太行隆肛蛙与隆肛蛙是不同的物种;2)原隆肛蛙河南伏牛山种群和山西中条山种群均为太行隆肛蛙的地理种群;3)隆肛蛙的种群间形态差异明显,其中四川安县种群、陕西周至种群和湖北利川种群与模式产地重庆巫山种群的差异可能达到了亚种或亚种以上分化水平.     

Complexin在囊泡运输中的作用

神经递质释放对维持生物体正常的生命活动有着重要的意义,它是由囊泡运输介导完成的.神经元细胞中囊泡运输涉及许多蛋白质间的相互作用,共同调控这一复杂的过程,可溶性小分子蛋白Complexin(Cpx)在这一过程中起着重要的作用,它同时具有抑制囊泡自发发放和促进囊泡诱发发放的功能.本文综合国内外近20年的研究,着重介绍了Cpx蛋白各部分结构域的功能,及其与一些囊泡分泌相关蛋白,如SNARE复合体、Synaptotagmin(Syt),间的相互作用机制及其最新进展.     

研究: 脂联素经肝X受体α途径对RAW 264.7巨噬细胞ABCG1表达的影响

泡沫细胞形成是动脉粥样硬化发生的关键环节,胆固醇逆转运可以防止泡沫细胞形成,ATP结合盒转运体G1(ATP-binding cassette transporter G1,ABCG1)在胆固醇逆转运中起着很重要的作用,可将细胞内胆固醇转运至高密度脂蛋白(high density lipoprotein,HDL)．肝X受体α (liver X receptor α,LXRα)可通过调节其靶基因ABCG1的表达来调控胆固醇逆转运．脂联素有很广泛的心血管保护作用,但对RAW 264.7巨噬细胞ABCG1表达的影响尚不清楚．为了研究脂联素对RAW 264.7巨噬细胞ABCG1表达的影响及其机制,采用实时荧光定量PCR、蛋白质印迹法检测ABCG1和LXRα的表达,使用液体闪烁计数仪检测胆固醇流出率,并利用siRNA干扰技术抑制LXRα的表达来研究LXRα在脂联素调节ABCG1中的作用．结果表明,脂联素浓度依赖性和时间依赖性地上调ABCG1和LXRα的mRNA和蛋白质的表达,促进巨噬细胞胆固醇流出．经LXRα siRNA处理后,脂联素上调ABCG1的作用消失,胆固醇流出率也相应减少．上述结果提示,脂联素经LXRα途径促进RAW 264.7巨噬细胞ABCG1表达和胆固醇流出,防止泡沫细胞形成,减轻动脉粥样硬化．     

DeltAMT: a statistical algorithm for fast detection of protein modifications from LC-MS/MS data

Identification of proteins and their modifications via liquid chromatography-tandem mass spectrometry is an important task for the field of proteomics. However, because of the complexity of tandem mass spectra, the majority of the spectra cannot be identified. The presence of unanticipated protein modifications is among the major reasons for the low spectral identification rate. The conventional database search approach to protein identification has inherent difficulties in comprehensive detection of protein modifications. In recent years, increasing efforts have been devoted to developing unrestrictive approaches to modification identification, but they often suffer from their lack of speed. This paper presents a statistical algorithm named DeltAMT (Delta Accurate Mass and Time) for fast detection of abundant protein modifications from tandem mass spectra with high-accuracy precursor masses. The algorithm is based on the fact that the modified and unmodified versions of a peptide are usually present simultaneously in a sample and their spectra are correlated with each other in precursor masses and retention times. By representing each pair of spectra as a delta mass and time vector, bivariate Gaussian mixture models are used to detect modification-related spectral pairs. Unlike previous approaches to unrestrictive modification identification that mainly rely upon the fragment information and the mass dimension in liquid chromatography-tandem mass spectrometry, the proposed algorithm makes the most of precursor information. Thus, it is highly efficient while being accurate and sensitive. On two published data sets, the algorithm effectively detected various modifications and other interesting events, yielding deep insights into the data. Based on these discoveries, the spectral identification rates were significantly increased and many modified peptides were identified.     

A complete solution for dissecting pure main and epistatic effects of QTL in triple testcross design

Epistasis plays an important role in genetics, evolution and crop breeding. To detect the epistasis, triple test cross (TTC) design had been developed several decades ago. Classical procedures for the TTC design use only linear transformations Z(1), Z(2) and Z(3), calculated from the TTC family means of quantitative trait, to infer the nature of the collective additive, dominance and epistatic effects of all the genes. Although several quantitative trait loci (QTL) mapping approaches in the TTC design have been developed, these approaches do not provide a complete solution for dissecting pure main and epistatic effects. In this study, therefore, we developed a two-step approach to estimate all pure main and epistatic effects in the F(2)-based TTC design under the F(2) and F(∞) metric models. In the first step, with Z(1) and Z(2) the augmented main and epistatic effects in the full genetic model that simultaneously considered all putative QTL on the whole genome were estimated using empirical Bayes approach, and with Z(3) three pure epistatic effects were obtained using two-dimensional genome scans. In the second step, the three pure epistatic effects obtained in the first step were integrated with the augmented epistatic and main effects for the further estimation of all other pure effects. A series of Monte Carlo simulation experiments has been carried out to confirm the proposed method. The results from simulation experiments show that: 1) the newly defined genetic parameters could be rightly identified with satisfactory statistical power and precision; 2) the F(2)-based TTC design was superior to the F(2) and F(2:3) designs; 3) with Z(1) and Z(2) the statistical powers for the detection of augmented epistatic effects were substantively affected by the signs of pure epistatic effects; and 4) with Z(3) the estimation of pure epistatic effects required large sample size and family replication number. The extension of the proposed method in this study to other base populations was further discussed.