An Analysis of HLA-A, -B,and -DRB1 Allele and Haplotype Frequencies of 21,918 Residents Living in Liaoning,China

HLA-A, -B and -DRB1 allele frequencies and their haplotype frequencies in 21,918 Chinese residents living in Liaoning Province, who were registered as volunteer donors of China Marrow Donor Registry, were investigated. They are composed of 93.37% Han Chinese, 5.1% Manchus, 0.57% Mongols, 0.46% Hui persons, 0.29% Koreans and 0.14% Xibe ethnic group. In total eighteen different HLA-A alleles, forty-eight different HLA-B alleles and fourteen different HLA-DRB1 alleles have been identified. Their frequencies are in agreement with the Hardy-Weinberg equilibrium. For Han Chinese in Liaoning, 1,534 different HLA-A-B-DRB1 haplotypes were identified, with a frequency of higher than 0.01%. A*30-B*13-DRB1*07, A*02-B*46-DRB1*09 and A*02-B*13-DRB1*12 are the most frequent haplotypes among Liaoning Han. While Liaoning Han, Liaoning Manchu, Liaoning Mongol, Liaoning Hui and Liaoning Korean share the northern Han characteristic haplotypes, all minority ethnic groups with the exception of Liaoning Manchu have developed their own unique HLA profiles. This dataset characterizes the HLA allele and haplotype frequencies in the Liaoning area and suggests that it is different from those in other parts of China and ethnic groups, which implicates transplant donor searching strategies and studies on population genetics.     

Household Ventilation May Reduce Effects of Indoor Air Pollutants for Prevention of Lung Cancer: A Case-Control Study in a Chinese Population

Background

Although the International Agency for Research on Cancer (IARC) has classified various indoor air pollutants as carcinogenic to humans, few studies evaluated the role of household ventilation in reducing the impact of indoor air pollutants on lung cancer risk.

Objectives

To explore the association between household ventilation and lung cancer.

Methods

A population-based case-control study was conducted in a Chinese population from 2003 to 2010. Epidemiologic and household ventilation data were collected using a standardized questionnaire. Unconditional logistic regression was employed to estimate adjusted odds ratios (OR_adj) and their 95% confidence intervals (CI).

Results

Among 1,424 lung cancer cases and 4,543 healthy controls, inverse associations were observed for good ventilation in the kitchen (OR_adj = 0.86, 95% CI: 0.75, 0.98), bedroom (OR_adj = 0.90, 95% CI: 0.79, 1.03), and both kitchen and bedroom (OR_adj = 0.87, 95% CI: 0.75, 1.00). Stratified analyses showed lung cancer inversely associated with good ventilation among active smokers (OR_adj = 0.85, 95% CI: 0.72, 1.00), secondhand smokers at home (OR_adj = 0.77, 95% CI: 0.63, 0.94), and those exposed to high-temperature cooking oil fumes (OR_adj = 0.82, 95% CI: 0.68, 0.99). Additive interactions were found between household ventilation and secondhand smoke at home as well as number of household pollutant sources.

Conclusions

A protective association was observed between good ventilation of households and lung cancer, most likely through the reduction of exposure to indoor air pollutants, indicating ventilation may serve as one of the preventive measures for lung cancer, in addition to tobacco cessation.     

Tafazzin Protein Expression Is Associated with Tumorigenesis and Radiation Response in Rectal Cancer: A Study of Swedish Clinical Trial on Preoperative Radiotherapy

Background

Tafazzin (TAZ), a transmembrane protein contributes in mitochondrial structural and functional modifications through cardiolipin remodeling. TAZ mutations are associated with several diseases, but studies on the role of TAZ protein in carcinogenesis and radiotherapy (RT) response is lacking. Therefore we investigated the TAZ expression in rectal cancer, and its correlation with RT, clinicopathological and biological variables in the patients participating in a clinical trial of preoperative RT.

Methods

140 rectal cancer patients were included in this study, of which 65 received RT before surgery and the rest underwent surgery alone. TAZ expression was determined by immunohistochemistry in primary cancer, distant, adjacent normal mucosa and lymph node metastasis. In-silico protein-protein interaction analysis was performed to study the predictive functional interaction of TAZ with other oncoproteins.

Results

TAZ showed stronger expression in primary cancer and lymph node metastasis compared to distant or adjacent normal mucosa in both non-RT and RT patients. Strong TAZ expression was significantly higher in stages I-III and non-mucinious cancer of non-RT patients. In RT patients, strong TAZ expression in biopsy was related to distant recurrence, independent of gender, age, stages and grade (p = 0.043, HR, 6.160, 95% CI, 1.063–35.704). In silico protein-protein interaction study demonstrated that TAZ was positively related to oncoproteins, Livin, MAC30 and FXYD-3.

Conclusions

Strong expression of TAZ protein seems to be related to rectal cancer development and RT response, it can be a predictive biomarker of distant recurrence in patients with preoperative RT.     

Association between CYP1A2 and CYP1B1 Polymorphisms and Colorectal Cancer Risk: A Meta-Analysis

Background

The previous published data on the association between CYP1A2*F (rs762551), CYP1B1 Leu432Val (rs1056836), Asn453Ser (rs180040), and Arg48Gly (rs10012) polymorphisms and colorectal cancer risk remained controversial.

Methodology/Principal Findings

The purpose of this study is to evaluate the role of CYP1A2*F, CYP1B1 Leu432Val, Asn453Ser, and Arg48Gly genotypes in colorectal cancer susceptibility. We performed a meta-analysis on all the eligible studies that provided 5,817 cases and 6,544 controls for CYP1A2*F (from 13 studies), 9219 cases and 10406 controls for CYP1B1 Leu432Val (from 12 studies), 6840 cases and 7761 controls for CYP1B1 Asn453Ser (from 8 studies), and 4302 cases and 4791 controls for CYP1B1Arg48Gly (from 6 studies). Overall, no significant association was found between CYP1A2*F, CYP1B1 Leu432Val, Asn453Ser, and Arg48Gly and colorectal cancer risk when all the eligible studies were pooled into the meta-analysis. And in the subgroup by ethnicity and source of controls, no evidence of significant association was observed in any subgroup analysis.

Conclusions/Significance

In summary, this meta-analysis indicates that CYP1A2*F, CYP1B1 Leu432Val, Asn453Ser, and Arg48Gly polymorphisms do not support an association with colorectal cancer, and further studies are needed to investigate the association. In addition, our work also points out the importance of new studies for CYP1A2*F polymorphism in Asians, because high heterogeneity was found (dominant model: I ² = 81.3%; heterozygote model: I ² = 79.0).     

猪CAST基因多态性与肌纤维组织学特性及屠宰性状的相关性分析

采用3种限制性核酸内切酶对45头金皮(金华×皮特兰)F₂代猪钙蛋白酶抑制蛋白基因(CAST)的第6外显子和第7外显子之间的片段进行了PCR-RFLP分析, 结果显示在第6内含子内均检测到MspⅠ、HinfⅠ和RsaⅠ酶切多态性。根据酶切结果将CAST基因分为3种基因型(AACCEE、BBDDFF、ABCDEF), 其基因型频率分别为0.1778, 0.2222, 0.6000。对背最长肌做连续性石蜡切片, 分别采用苏木精-伊红和肌球蛋白重链免疫组织化学方法染色并拍照, ImageJ软件统计肌纤维横截面积、密度、直径及MHCⅠ型肌纤维的比例。采用SPSS程序分析了CAST不同基因型对金皮F₂代猪肌纤维组织学特性和屠宰性状的影响。结果表明: BBDDFF基因型个体的肌纤维横截面积和眼肌面积显著地高于ABCDEF基因型个体的肌纤维横截面积和眼肌面积(P < 0.05)。     

IGF1调控区微卫星座位对金华猪生长性能的影响

类胰岛素生长因子IGF1及其相关结合蛋白和跨膜受体IGFR在哺乳动物的生长过程中扮演着重要角色。本文基于最小二乘法分析了IGF1 5′ 调控序列微卫星座位对金华猪初生重, 断奶重, 120日龄重, 180日龄重和出生窝重等生长性状的影响。结果表明: 286/286基因型对金华猪初生重有显著影响(P<0.05); 280/286基因型对金华猪开产后出生窝重影响显著(P<0.05), 进一步通过等位基因平均替代效应分析发现274 bp和286 bp等位基因有利于提高初生重, 280 bp等位基因有利于第二胎出生窝重的提高。同时通过相关性分析发现金华猪开产母猪出生窝重、总产仔数和产活仔数间的相关性极显著(P<0.01), 因此出生窝重的增加有利于提高金华猪的产仔性能。     

雌核发育银鲫微卫星突变速率和突变模式

银鲫是天然雌核发育的三倍体两性型种群, 因其遗传背景和生殖方式的特殊性, 已经成为研究单性和多倍体脊椎动物进化遗传学的理想模式鱼类。利用33个微卫星序列对雌核发育银鲫的突变速率和突变模式进行研究, 结果表明: (1) 22个子代个体中, 检测到1尾个体在15个微卫星位点具有18个突变等位基因; (2) 每个微卫星位点每代总体平均突变率是1.16×10-2, 95%置信区间是6.87×10-3~1.83×10-2, 与其他鱼类相比, 雌核发育银鲫的突变率明显偏高, 这与天然雌核发育鱼类处在单性生殖和两性生殖的过度阶段有密切关系; (3) 具有突变等位基因的13个位点的重复单元数目都在10次以上, 11个复合型微卫星位点的突变率(1.31×10-2)与21个完美型位点(1.00×10-2)的突变率没有明显差异(P = 0.67), 微卫星突变率受到重复单元数目的影响, 然而与重复结构类型和侧翼序列GC碱基含量无相关性; (4) 序列分析表明, 雌核发育银鲫的微卫星突变模式并不严格遵守逐步突变模型。     

干旱对陆地生态系统生产力的影响

该文综述了干旱对陆地生态系统生产力的影响,分析了其影响机制,并总结了植被对干旱的响应与适应及其机理机制。干旱通过抑制光合作用来降低陆地生态系统总初级生产力,干旱还可以降低生态系统的自养呼吸和异养呼吸。同时干旱还可以通过影响其它干扰形式来间接影响陆地生态系统生产力,如增加火干扰的发生频率和强度,增加植物的死亡率,增加病虫害的发生等。在生态系统水平上干旱可以降低碳固定,减弱碳汇功能,甚至把生态系统从碳汇改变成碳源。目前生态系统水平上的干旱影响研究主要通过两种方法实现,一种是模型模拟,另一种就是大型模拟实验。作为陆地生态系统生产力的实现者,在干旱胁迫条件下,植物也会采取积极的适应策略以减弱干旱对生态系统生产力的影响,其适应策略主要分以下3种:在一些周期性发生干旱的地区,植物会调整生长期以避开干旱或通过休眠来减弱干旱所造成的伤害;还有一些植物会通过调节体内的代谢过程,改变一些生理特性来抵御干旱;而长期生活在干旱条件下的植物则通过进化来改变了自身的生理生化代谢过程,形成耐旱机制。目前,植物对干旱响应的分子学机制,以及生态系统水平上对干旱的响应和适应仍然是薄弱的领域,也必然成为未来研究的重点。     

广东省新发现一种危害水稻的入侵性瘿螨

最近两年一种新的入侵性瘿螨在中国广东省韶关市危害水稻。这种螨曾经在泰国北部被报道过,推测后来传入中国,目前在韶关严重危害水稻。这种螨被鉴定为具沟掌瘿螨Cheiracus sulcatus Keifer,并进行了重新描述和绘图,对危害症状进行了拍照和描述。文章还分析了其扩散风险性,并提出了控制传播的建议。     

广东发现濒危鸟类海南鳽

:1 998年 6月 1 7日、1 999年 8月 1 7日、1 999年 8月 2 6日在广东省始兴县车八岭国家级自然保护区范围内三次获得海南幼鸟各 1只 ;华南濒危动物研究所曾于 1 960年 3月 2 2日在英德县滑水山采获雄成鸟标本 1只。至此 ,广东省内存在濒危鸟类海南得到确切证实。近些年内桂南、粤北是国内仅有海南种群分布的地区