Pituitary adenylate cyclase-activating polypeptide is up-regulated in cortical pyramidal cells after focal ischemia and protects neurons from mild hypoxic/ischemic damage

The protective effect of pituitary adenylate cyclase-activating polypeptide (PACAP) in stroke models is poorly understood. We studied patterns of PACAP, vasoactive intestinal peptide, and the PACAP-selective receptor PAC1 after middle cerebral artery occlusion and neuroprotection by PACAP in cortical cultures exposed to oxygen/glucose deprivation (OGD). Within hours, focal ischemia caused a massive, NMDA receptor (NMDAR)-dependent up-regulation of PACAP in cortical pyramidal cells. PACAP expression dropped below the control level after 2 days and was normalized after 4 days. Vasoactive intestinal peptide expression was regulated oppositely to that of PACAP. PAC1 mRNA showed ubiquitous expression in neurons and astrocytes with minor changes after ischemia. In cultured cortical neurons PACAP27 strongly activated Erk1/2 at low and p38 MAP kinase at higher nanomolar concentrations via PAC1. In astrocyte cultures, effects of PACAP27 on Erk1/2 and p38 were weak. During OGD, neurons showed severely reduced Erk1/2 activity and dephosphorylation of Erk1/2-regulated Ser112 of pro-apoptotic Bad. PACAP27 stimulation counteracted Erk1/2 inactivation and Bad dephosphorylation during short-term OGD but was ineffective after expanded OGD. Consistently, PACAP27 caused MEK-dependent neuroprotection during mild but not severe hypoxic/ischemic stress. While PACAP27 protected neurons at 1–5 nmol/L, full PAC1 activation by 100 nmol/L PACAP exaggerated hypoxic/ischemic damage. PACAP27 stimulation of astrocytes increased the production of Akt-activating factors and conferred ischemic tolerance to neurons. Thus, ischemia-induced PACAP may act via neuronal and astroglial PAC1. PACAP confers protection to ischemic neurons by maintaining Erk1/2 signaling via neuronal PAC1 and by increasing neuroprotective factor production via astroglial PAC1.     

Robustness of neural codes and its implication on natural image processing

In this study, based on the view of statistical inference, we investigate the robustness of neural codes, i.e., the sensitivity of neural responses to noise, and its implication on the construction of neural coding. We first identify the key factors that influence the sensitivity of neural responses, and find that the overlap between neural receptive fields plays a critical role. We then construct a robust coding scheme, which enforces the neural responses not only to encode external inputs well, but also to have small variability. Based on this scheme, we find that the optimal basis functions for encoding natural images resemble the receptive fields of simple cells in the striate cortex. We also apply this scheme to identify the important features in the representation of face images and Chinese characters.

Exploration of the binding mode of α/β-type small acid soluble proteins (SASPs) with DNA

The α/β-type small acid soluble proteins (SASPs) are a major factor in protecting the spores from being killed in bacteria. In this article, we perform a systematic phylogenetic analysis of the α/β-type SASP in the genus of Geobacillus, which indicates that the whole family can be divided into three groups. We choose one protein from each group as a representative and construct the tertiary structure of these proteins. In order to explore the mechanism of protecting DNA from damage, 15 ns molecular dynamics simulation for the four complexes of Gsy3 with DNA are performed. The sequence alignment, model structure and binding energy analysis indicate that the helix2 region of SASPs is more conserved and plays a more crucial role in protecting DNA. Pairwise decomposition of residue interaction energies calculation demonstrate that amino acids of Asn10, Lys24, Asn49, Ile52, Ile56, Thr57, Lys58, Arg59 and Val61 take major effect in the binding interaction. The differences of energy contribution of the amino acids between different complexes make us conclude that the protein structure conformation has a slight change upon more proteins binding to DNA and consequently there occur protein-protein cooperation interactions.     

Characteristic microbial community of a dry thermophilic methanogenic digester: its long-term stability and change with feeding

Thermophilic dry anaerobic digestion of sludge for cellulose methanization was acclimated at 53 °C for nearly 5 years using a waste paper-based medium. The stability of the microbial community structure and the microbial community responsible for the cellulose methanization were studied by 16S rRNA gene-based clone library analysis. The microbial community structure remained stable during the long-term acclimation period. Hydrogenotrophic methanogens dominated in methanogens and Methanothermobacter, Methanobacterium, Methanoculleus, and Methanosarcina were responsible for the methane production. Bacteria showed relatively high diversity and distributed mainly in the phyla Firmicutes, Bacteroidetes, and Synergistetes. Ninety percent of operational taxonomic units (OTUs) were affiliated with the phylum Firmicutes, indicating the crucial roles of this phylum in the digestion. Relatives of Clostridium stercorarium, Clostridium thermocellum, and Halocella cellulosilytica were dominant cellulose degraders. The acclimated stable sludge was used to treat garbage stillage discharged from a fuel ethanol production process, and the shift of microbial communities with the change of feed was analyzed. Both archaeal and bacterial communities had obviously changed: Methanoculleus spp. and Methanothermobacter spp. and the protein- and fatty acid-degrading bacteria became dominant. Accumulation of ammonia as well as volatile fatty acids led to the inhibition of microbial activity and finally resulted in the deterioration of methane fermentation of the garbage stillage.     

鹊肾树树皮的化学成分和抗炎作用研究

通过药理实验确定了鹊肾树树皮的乙酸乙酯萃取物为抗炎活性部位,并利用色谱技术从该部位中分离得到了7个化合物,通过UV、IR、NMR、MS等现代谱学方法鉴定化合物的结构分别为:丁二酸(1)、6-乙基-5-羟基-2,7-二甲氧基-1,4-萘醌(2)、3β,20-二羟基-5β-孕甾烷(3)、5-羟基麦芽酚(4)、双[5-甲酰基...     

TNF-α和IL-13对人肺成纤维细胞胶原蛋白生成的影响

以胶原蛋白过量沉积为主要特征的纤维化是临床肺部疾患常见的病理现象。该研究利用RT-PCR技术检测不同剂量TNF-α和IL-13对人肺成纤维细胞IL-13Rα1、IL-13Rα2和Ⅰ型胶原蛋白转录水平的影响;ELISA检测细胞培养上清sIL-13Rα2分泌量;羟脯氨酸法定量分析各组肺成纤维细胞胶原蛋白生成情况。结果发现:在实验剂量条件下,TNF-α和IL-13对人肺成纤维细胞IL-13Rα1的表达无显著影响;两者均能不同程度地上调IL-13Rα2的表达;与对照组相比,TNF-α对胶原蛋白的表达有下调作用,IL-13则无显著影响。     

基于生理指标与籽粒产量关系的小麦品种抗冻性分析

以20个冬小麦品种为材料进行盆栽试验,对其在低温胁迫条件下功能叶超氧化物歧化酶（SOD）、过氧化物酶（POD）、过氧化氢酶（CAT）活性,丙二醛（MDA）、可溶性蛋白、可溶性糖含量以及籽粒产量、千粒重和籽粒形态性状进行测定.结果表明：拔节初期麦苗经-4 ℃低温胁迫后,不同品种冬小麦籽粒形态性状和产量性状均发生变化,绝大多数小麦品种籽粒长宽比、圆度和不育小穗数均增加,籽粒等效直径和面积及千粒重和籽粒产量均下降.通径分析表明,拔节初期低温处理后,功能叶SOD活性和可溶性糖含量是影响籽粒产量的主导因素,其中SOD活性对籽粒产量的直接影响较大,直接通径系数为-0.578.以籽粒产量下降的百分数作为小麦抗冻性评价的标准,可将20个小麦品种划分为3类：强抗冻类型的济麦19、济麦20、良星99、山农1135、山农8355、泰山23、泰山9818、汶农6号和烟农21,弱抗冻类型的临麦2号、潍麦8号、烟农19和淄麦12号,而其余7个品种属中度抗冻类型.苗期综合评价值（D值）与籽粒产量下降的百分数之间呈显著负相关(r=-0.512*),说明小麦苗期抗冻性强有利于获得较高的籽粒产量.苗期是小麦抗冻性鉴别选择的重要时期.     

Phenolic compounds from Selaginella moellendorfii

Chemical investigation of the leaves and roots of Selaginella moellendorfii Hieron has resulted in the isolation and characterization of two new flavone glucosides, 7‐O‐(β‐glucopyranosyl(1→2)‐[β‐glucopyranosyl(1→6)]‐β‐glucopyranosyl)flavone‐3′,4′,5,7‐tetraol ( 1 ) and 7‐O‐(β‐glucopyranosyl(1→2)‐[β‐glucopyranosyl(1→6)]‐β‐glucopyranosyl)flavone‐4′,5,7‐triol ( 2 ), two new biflavonoids, 2,3‐dihydroflavone‐5,7,4′‐triol‐(3′→8″)‐flavone‐5″,6″,7″,4′′′‐tetraol ( 3 ) and 6‐methylflavone‐5,7,4′‐triol‐(3′→O→4′′′)‐6″‐methylflavone‐5″,7″‐diol ( 4 ), two new lignans, (7′E)‐3,5,3′,5′‐tetramethoxy‐8 : 4′‐oxyneolign‐7′‐ene‐4,9,9′‐triol ( 5 ) and 3,3′‐dimethoxylign‐8′‐ene‐4,4′,9‐triol ( 6 ), together with two known monolignans, four known lignans, and four known biflavonoids. Their structures were established by spectroscopic means and by comparison with literature values.