Cecal and fecal bacterial flora of the Mongolian gerbil and the chinchilla.

The Mongolian gerbil is being increasingly used as a laboratory animal and as a pet. Both chinchillas and gerbils are used as animal models for otitis media and other otic research. Previously, only incomplete information was available regarding the indigenous bacterial flora of the lower intestinal tracts of these coprophagic animals. Using the strict anaerobic methodology of the Virginia Polytechnic Institute Anaerobe Laboratory, we studied the predominant bacterial flora of the cecum and fecal pellets of the gerbil and the chinchilla and the bacterial flora of digesta pellets in the proximal colon. We found species of the following anaerobic genera in high dilutions of gerbil fecal pellets: Bifidobacterium, Clostridium, Propionibacterium, Lactobacillus, and Bacteroides. Only lactobacilli were found in high dilutions of digesta from the upper colon, although the cecum yielded Peptostreptococcus, Bifidobacterium, Clostridium, Lactobacillus, Propionibacterium, and Bacteroides species from high dilutions of cecal contents. The facultatively anaerobic and aerobic flora isolated consisted of species of Bacillus, Streptococcus, Staphylococcus, Acinetobacter, Alcaligenes, Escherichia, Pasteurella, and Pseudomonas plus several unidentifiable organisms. Species of Bifidobacterium, Bacteroides, Eubacterium, and anaerobic Lactobacillus were isolated from chinchillas.     

The step-size distance in muscle contraction: properties and estimates

The step-size distance in muscle contraction is obtained using the step-size distance equation z = u/n, where z is the step-size distance, u is the actin filament velocity and n is the ATPase rate of splitting. In a previous study a step-size distance of about 17 Å at no load was determined for intact frog muscle. Some properties of the step-size distance equation are described. We have now made estimates of the step-size distance z for a variety of muscles using existing physiological and biochemical data in the literature. The estimates are listed in Tables 1 and 2. We find that the step-size distances are clustered in the range 13–17 Å for nearly all muscles.     

Intraspecific nuclear DNA variation in Drosophila

We have summarized and analyzed all available nuclear DNA sequence polymorphism studies for three species of Drosophila, D. melanogaster (24 loci), D. simulans (12 loci), and D. pseudoobscura (5 loci). Our major findings are: (1) The average nucleotide heterozygosity ranges from about 0.4% to 2% depending upon species and function of the region, i.e., coding or noncoding. (2) Compared to D. simulans and D. pseudoobscura (which are about equally variable), D. melanogaster displays a low degree of DNA polymorphism. (3) Noncoding introns and 3' and 5' flanking DNA shows less polymorphism than silent sites within coding DNA. (4) X-linked genes are less variable than autosomal genes. (5) Transition (Ts) and transversion (Tv) polymorphisms are about equally frequent in non-coding DNA and at fourfold degenerate sites in coding DNA while Ts polymorphisms outnumber Tv polymorphisms by about 2:1 in total coding DNA. The increased Ts polymorphism in coding regions is likely due to the structure of the genetic code: silent changes are more often Ts's than are replacement substitutions. (6) The proportion of replacement polymorphisms is significantly higher in D. melanogaster than in D. simulans. (7) The level of variation in coding DNA and the adjacent noncoding DNA is significantly correlated indicating regional effects, most notably recombination. (8) Surprisingly, the level of polymorphism at silent coding sites in D. melanogaster is positively correlated with degree of codon usage bias. (9) Three proposed tests of the neutral theory of DNA polymorphisms have been performed on the data: Tajima's test, the HKA test, and the McDonald-Kreitman test. About half of the loci fail to conform to the expectations of neutral theory by one of the tests. We conclude that many variables are affecting levels of DNA polymorphism in Drosophila, from properties of nucleotides to population history and, perhaps, mating structure. No simple, all encompassing explanation satisfactorily accounts for the data.      

A molecular phylogeny for the Drosophila melanogaster subgroup and the problem of polymorphism data

Drosophila melanogaster belongs to a closely related group of eight species collectively known as the melanogaster subgroup; all are native to sub-Saharan Africa and islands off the east coast of Africa. The phylogenetic relationships of most species in this subgroup have been well documented; however, the three most closely related species, D. simulans, D. sechellia, and D. mauritiana, have remained problematic from a phylogenetic standpoint as no data set has unambiguously resolved them. We present new DNA sequence data on the nullo and Serendipity-alpha genes and combine them with all available nuclear DNA sequence data; the total data encompass 12 genes and the ITS of rDNA. A methodological problem arose because nine of the genes had information on intraspecific polymorphisms in at least one species. We explored the effect of inclusion/exclusion of polymorphic sites and found that it had very little effect on phylogenetic inferences, due largely to the fact that 82% of polymorphisms are autapomorphies (unique to one species). We have also reanalyzed our previous DNA-DNA hybridization data with a bootstrap procedure. The combined sequence data set and the DNA-DNA hybridization data strongly support the sister status of the two island species, D. sechellia and D. mauritiana. This at least partially resolves what had been a paradox of parallel evolution in these two species.      

Sterol content and squaline-2(3)-epoxide-lanosterol cyclase activity in human foetal brain during early and mid-gestation

—Cholesterol, desmostcrol and squalene-2(3)-epoxide-lanostcrol cyclase were assayed in various regions of human foetal brain from 10 to 22 weeks gestation. The cerebellum, thalamus and hypothalamus, and the ‘remainder’ of the brain were analysed. The proportion of desmosterol to cholesterol was highest in the thalamus and hypothalamus and lowest in the cerebellum. It is suggested that the ratio of desmosterol to cholesterol gives an indication of the state of maturity of a given region, particularly with respect to myelination. Thus the higher levels of desmosterol detected in the thalamus and hypothalamus may be correlated with earlier myelination in this region compared to the cerebellum which myelinates much later in development. Squalene-2(3)-epoxide-lanosterol cyclase activity in whole brain showed three phases during the period studied; an initial low level up to 15 weeks, a slight increase in activity from 15 to 18 weeks (corresponding to neuroblast multiplication) and a sharp increase after 18 weeks (corresponding to glial multiplication prior to myelination). The enzyme was shown to be microsomal although freezing and thawing of whole brain tended to result in its solubilization. The apparent K_m was found to be 2.5 × 10^?6m and the effects of the inhibitors iminosqualene and di-iminosqualene were studied. A comparison was made between the brain enzyme and the liver enzyme at the same age and it was seen that at 22 weeks there was a large increase in activity in the brain, prior to myelination, which was not paralleled by an increase in the activity of the liver enzyme. In this study we have measured the levels of cholesterol, desmosterol and squa-lene-2(3)-epoxide-lanosterol cyclase in whole human foctal brain, thalamus and hypothalamus, and cerebellum during early and mid-gestation. We have also examined various properties of the cyclase enzyme and in particular the variations in its activity during early brain development.     

A Structural Analysis of Nerve Myelin

A structure analysis of the low-angle X-ray diffraction data from nerve myelin is described. The low-angle X-ray data are interpreted in terms of an electron density strip model which has five parameters, these refer to the dimensions of the membrane pair and their component electron densities. Three sets of low-angle X-ray data from peripheral nerve swollen in media of different electron densities are analyzed and membrane pair dimensions and component electron densities on an absolute scale are assigned. Membrane pair dimensions are given for a variety of peripheral nerve myelins and central nervous system myelins.     

An X-ray study of the effect of enzymes on frog sciatic nerve myelin

Low-angle X-ray diffraction patterns have been recorded from frog sciatic nerve after digestion with trypsin and Pronase. Reproducible X-ray patterns were obtained by swelling the nerves in distilled water before treatment with enzymes. The X-ray patterns of enzyme-treated nerves are distinctly different from the X-ray pattern of normal (live) nerve. It would appear that the normal asymmetric nerve myelin membrane becomes symmetric about its center after treatment with enzymes as a result of proteolytic cleavage and a subsequent redistribution of protein components.