Rapid evaluation of threats to biodiversity: human footprint score and large vertebrate species responses in French Guiana

Although there is an extensive literature demonstrating the impact of human activities on both species extinction risk and local ecological processes, the methodological tools that allow for the visualization and quantification of the intensity of the observed and forthcoming impacts are lacking. Here we propose a Footprint index for French Guiana, (northern Atlantic coast of South America) which sums up the expected and proven disturbances on biodiversity. The index was developed by superimposing geographical and human data, including human population densities, land use, settlements and camps, mining and forest activities, tracks, roads and rivers. The relevance of the index as a general measure of anthropic impact on large terrestrial fauna was estimated by investigating the structure of the large terrestrial vertebrate assemblages, including primates, large frugivorous birds, rodents and ungulates, in relation to the extent of disturbances. The abundance of large terrestrial fauna was assessed using the line-transect sampling method in 34 forest sites facing different disturbance levels, including hunting, logging and fragmentation, and consequently different footprint scores. A Self Organizing Map was used to combine species abundances and disturbance scores. It allowed us to rank species in accordance to their sensitivity towards disturbances, identifying the response of fauna to different concomitant threats. The index provided correct identification of sites with similar threats which proves it is a relevant estimator of human disturbance. In addition, the richness of animal communities and abundances of several seed dispersers and predators were negatively correlated to the index (e.g. large monkeys and frugivorous birds, r ² = 0.49, P < 0.0001 and r ² = 0.48, P < 0.0001, respectively), indicating its reliability in identifying areas where animal communities are disturbed. The index could, therefore, constitute a useful tool to identify areas where ecological processes supported by those species are expected to be disrupted, and where they are already disrupted. Furthermore, the footprint index can deal with lack of field data or with only partially valid information, and so may directly help land managers forecast and, hopefully, mitigate forthcoming impacts resulting from the development of human activities.     

Comparative Mitogenomic Analysis Reveals Sexual Dimorphism in a Rare Montane Lacewing (Insecta: Neuroptera: Ithonidae)

Rapisma McLachlan, 1866 (Neuroptera: Ithonidae) is a rarely encountered genus of lacewings found inmontane tropical or subtropical forests in Oriental Asia. In Xizang Autonomous Region (Tibet) of China there are two sympatrically distributed species of Rapisma, i.e. Rapisma xizangense Yang, 1993 and Rapisma zayuanum Yang, 1993, in which R. xizangense is only known as male and has dull brownish body and wing coloration, while R. zayuanum is only known as female and has bright green body and wing coloration. In order to clarify the relationship between these two species, we determined the complete mitochondrial (mt) genomes of R. xizangense and R. zayuanum for the first time. The mt genomes are 15,961 and 15,984 bp in size, respectively, and comprised 37 genes (13 protein coding genes, 22 tRNA genes and 2 rRNA genes). A major noncoding (control) region was 1,167 bp in R. xizangense and 1,193 bp in R. zayuanum with structural organizations simpler than that reported in other Neuropterida species, notably lacking conserved blocks or long tandem repeats. Besides similar mitogenomic structure, the genetic distance between R. xizangense and R. zayuanum based on two rRNAs and 13 protein coding genes (PCGs) as well as the genetic distance between each of these two Tibetan Rapisma species and a Thai Rapisma species (R. cryptunum) based on partial rrnL show that R. xizangense and R. zayuanum are most likely conspecific. Thus, R. zayuanum syn. nov. is herein treated as a junior synonym of R. xizangense. The present finding represents a rare example of distinct sexual dimorphism in lacewings. This comparative mitogenomic analysis sheds new light on the identification of rare species with sexual dimorphism and the biology of Neuroptera.     

Bronchial epithelial cells are rendered insensitive to glucocorticoid transactivation by transforming growth factor-β1

Background

We have previously shown that transforming growth factor-beta (TGF-beta) impairs glucocorticoid (GC) function in pulmonary epithelial cell-lines. However, the signalling cascade leading to this impairment is unknown. In the present study, we provide the first evidence that TGF-beta impairs GC action in differentiated primary air-liquid interface (ALI) human bronchial epithelial cells (HBECs). Using the BEAS-2B bronchial epithelial cell line, we also present a systematic examination of the known pathways activated by TGF-beta, in order to ascertain the molecular mechanism through which TGF-beta impairs epithelial GC action.

Methods

GC transactivation was measured using a Glucocorticoid Response Element (GRE)–Secreted embryonic alkaline phosphatase (SEAP) reporter and measuring GC-inducible gene expression by qRT-PCR. GC transrepression was measured by examining GC regulation of pro-inflammatory mediators. TGF-beta signalling pathways were investigated using siRNA and small molecule kinase inhibitors. GRα level, phosphorylation and sub-cellular localisation were determined by western blotting, immunocytochemistry and localisation of GRα–Yellow Fluorescent Protein (YFP). Data are presented as the mean ± SEM for n independent experiments in cell lines, or for experiments on primary HBEC cells from n individual donors. All data were statistically analysed using GraphPad Prism 5.0 (Graphpad, San Diego, CA). In most cases, two-way analyses of variance (ANOVA) with Bonferroni post-hoc tests were used to analyse the data. In all cases, P <0.05 was considered to be statistically significant.

Results

TGF-beta impaired Glucocorticoid Response Element (GRE) activation and the GC induction of several anti-inflammatory genes, but did not broadly impair the regulation of pro-inflammatory gene expression in A549 and BEAS-2B cell lines. TGF-beta-impairment of GC transactivation was also observed in differentiated primary HBECs. The TGF-beta receptor (ALK5) inhibitor SB431541 fully prevented the GC transactivation impairment in the BEAS-2B cell line. However, neither inhibitors of the known downstream non-canonical signalling pathways, nor knocking down Smad4 by siRNA prevented the TGF-beta impairment of GC activity.

Conclusions

Our results indicate that TGF-beta profoundly impairs GC transactivation in bronchial epithelial cells through activating ALK5, but not through known non-canonical pathways, nor through Smad4-dependent signalling, suggesting that TGF-beta may impair GC action through a novel non-canonical signalling mechanism.     

Phylogenetic revision of the Taenogera Kröber genus-group (Diptera: Therevidae), with descriptions of two new genera

The phylogenetic relationships of the Taenogera genus-group, consisting of nine genera, are examined using cladistic methods. Twenty-one species representing nine genera and one outgroup were compared in a cladistic analysis across 99 states in 44 characters. The genus Taenogera Kröber is revised to contain only T. longa (Schiner), T. nitida (Macquart) and T. notatithorax Mann. Two new genera are described and figured: Actenomeros gen. n., with two species, A. corniculaticaudus sp. n. and A. onyx sp. n.; and Taenogerella gen. n., with four species, Ta. elizabethae sp. n., Ta. platina sp. n., Ta. schlingeri sp. n. and Ta . nigrapicalis (Mann) comb. n. Phylogenetic analysis also supports the removal of Nanexila gracilis (Mann) comb. n. from Taenogera .     

Healthcare Workers' Challenges in the Implementation of Tuberculosis Infection Prevention and Control Measures in Mozambique

Objective

Healthcare Workers (HCWs) have a higher frequency of TB exposure than the general population and have therefore an occupational TB risk that infection prevention and control (IPC) measures aim to reduce. HCWs are crucial in the implementation of these measures. The objective of the study was to investigate Mozambican HCWs'' perceptions of their occupational TB risk and the measures they report using to reduce this risk. In addition, we explored the challenges HCWs encounter while using these TBIPC measures.

Methods

Focus group discussion. Analysis according content method.

Participants

Four categories of HCWs: auxiliary workers, medical (doctors and clinical officers), nurses and TB program staff.

Results

HCWs are aware of their occupational TB risk and use various measures to reduce their risk of infection. HCWs find it challenging to employ measures that minimize such risks and a lack of clear guidelines contributes to these challenges. HCWs'' and patient behavior further complicate the use of TBIPC measures.

Conclusion

HCWs in Mozambique perceive a high occupational risk of TB infection. They report several challenges using measures to reduce this risk such as shortage of material, lack of clear guidelines, insufficient motivation and inadequate training. Robust training with motivational approaches, alongside supervision and support for HCWs could improve implementation of TBIPC measures. Healthcare management should address the areas for improvement that are beyond the individual HCW''s control.     

Revision of the South American window fly genus Heteromphrale Kröber, 1937 (Diptera, Scenopinidae)

The Neotropical window fly genus Heteromphrale Kröber, 1937 is revised. Two previously described species (Heteromphrale chilensis (Kröber, 1937) and Heteromphrale cyanops (Edwards, 1932)) are redescribed while a new species (Heteromphrale blanca sp. n.) is described from Argentina. The male of Heteromphrale chilensis and female of Heteromphrale cyanops are described and figured for the first time, and a key to species is presented.     

New genera of philopotine spider flies (Diptera, Acroceridae) with a key to living and fossil genera

Information on the three previously described species of Halocoryza Alluaud is updated and a new species for the genus from Isla Carmen, Sea of Cortés, Baja California Sur, México is described. Halocoryza whiteheadianasp. n. was found at UV light on a beach of that island. This species does not fit the profile of the other three species, i.e., living on coralline beach sands, or in the Mangrove intertidal zone. Two alternative possibilities as to why this is so are suggested and a study plan for testing these possibilities is proposed.     

A remarkable new genus of stiletto flies from Egypt, with a key to Palaearctic genera of Phycinae (Diptera, Therevidae)

An unusual new genus (Salwaea burgensisgen. n., sp. n.) of phycine stiletto flies is described from Egypt. A key to Palaearctic genera of Phycinae is presented.     

The First Mitochondrial Genome for the Fishfly Subfamily Chauliodinae and Implications for the Higher Phylogeny of Megaloptera

Megaloptera are a basal holometabolous insect order with larvae exclusively predacious and aquatic. The evolutionary history of Megaloptera attracts great interest because of its antiquity and important systematic status in Holometabola. However, due to the difficulties identifying morphological apomorphies for the group, controversial hypotheses on the monophyly and higher phylogeny of Megaloptera have been proposed. Herein, we describe the complete mitochondrial (mt) genome of a fishfly species, Neochauliodes punctatolosus Liu & Yang, 2006, representing the first mt genome of the subfamily Chauliodinae. A phylogenomic analysis was carried out based on the mt genomic sequences of 13 mt protein-coding genes (PCGs) and two rRNA genes of nine Neuropterida species, comprising all three orders of Neuropterida and all families and subfamilies of Megaloptera. Both maximum likelihood and Bayesian inference analyses highly support the monophyly of Megaloptera, which was recovered as the sister of Neuroptera. Within Megaloptera, the sister relationship between Corydalinae and Chauliodinae was corroborated. The divergence time estimation suggests that stem lineage of Neuropterida and Coleoptera separated in the Early Permian. The interordinal divergence within Neuropterida might have occurred in the Late Permian.