Spatial and Temporal Occurrence of Blue Whales off the U.S. West Coast,with Implications for Management

Mortality and injuries caused by ship strikes in U.S. waters are a cause of concern for the endangered population of blue whales (Balaenoptera musculus) occupying the eastern North Pacific. We sought to determine which areas along the U.S. West Coast are most important to blue whales and whether those areas change inter-annually. Argos-monitored satellite tags were attached to 171 blue whales off California during summer/early fall from 1993 to 2008. We analyzed portions of the tracks that occurred within U.S. Exclusive Economic Zone waters and defined the ‘home range’ (HR) and ‘core areas’ (CAU) as the 90% and 50% fixed kernel density distributions, respectively, for each whale. We used the number of overlapping individual HRs and CAUs to identify areas of highest use. Individual HR and CAU sizes varied dramatically, but without significant inter-annual variation despite covering years with El Niño and La Niña conditions. Observed within-year differences in HR size may represent different foraging strategies for individuals. The main areas of HR and CAU overlap among whales were near highly productive, strong upwelling centers that were crossed by commercial shipping lanes. Tagged whales generally departed U.S. Exclusive Economic Zone waters from mid-October to mid-November, with high variability among individuals. One 504-d track allowed HR and CAU comparisons for the same individual across two years, showing similar seasonal timing, and strong site fidelity. Our analysis showed how satellite-tagged blue whales seasonally used waters off the U.S. West Coast, including high-risk areas. We suggest possible modifications to existing shipping lanes to reduce the likelihood of collisions with vessels.     

The creation of the essentialism story: an exercise in metahistory

The essentialism story is a version of the history of biological classification that was fabricated between 1953 and 1968 by Ernst Mayr, who combined contributions from Arthur Cain and David Hull with his own grudge against Plato. It portrays pre-Darwinian taxonomists as caught in the grip of an ancient philosophy called essentialism, from which they were not released until Charles Darwin's 1859 Origin of Species. Mayr's motive was to promote the Modern Synthesis in opposition to the typology of idealist morphologists; demonizing Plato served this end. Arthur Cain's picture of Linnaeus as a follower of 'Aristotelian' (scholastic) logic was woven into the story, along with David Hull's application of Karl Popper's term, 'essentialism', which Mayr accepted in 1968 as a synonym for what he had called 'typological thinking'. Although Mayr also pointed out the importance of empiricism in the history of taxonomy, the essentialism story still dominates the secondary literature. The history of the first telling of the essentialism story exposes its scant basis in fact.     

Migratory movements and surfacing rates of humpback whales (Megaptera novaeangliae) satellite tagged at Socorro Island,Mexico

Humpback whales wintering in the Revillagigedo Archipelago, Mexico, have been considered a different subpopulation from those found off mainland Mexico and Baja California. The primary feeding grounds for Revillagigedo humpbacks remain unknown. In February 2003, we deployed 11 Argos satellite‐monitored radio tags to track movements and surfacings of humpback whales (five adults without calves, five mothers with calves, one calf) off Socorro Island in the Revillagigedo Archipelago. Tracking ranged from 222 to 10,481 km over 4.9–149.1 d. Eight whales left Socorro Island: five visited other Mexican wintering destinations, seven moved north of these areas. Migration routes were primarily offshore (average 444 km). Two whales were tracked to feeding grounds: one to British Columbia (46 d migration), and one to Alaska (49 d migration). Mean travel speeds were 1.2 km/h in wintering areas, 4.0 km/h during migration, and 2.2 km/h in feeding areas. Overall surfacing rates ranged from 21 to 88 surfacings/h. Surfacing rates differed between the calf and all other whales, and between feeding areas and migratory/wintering areas for the calf and an adult without a calf. The calf also showed diel variation in surfacing rates. The offshore habits of tagged whales may explain scarce resightings of Revillagigedo humpbacks outside the Revillagigedo Archipelago.     

Methods for taxonomic and distributional studies of terrestrial flatworms (Tricladida: Terricola)

Traditionally used methods for collecting and preserving terrestrial flatworms have proved deficient in various respects. Comparison of methods for preparing these animals for taxonomic study has shown that preservation of morphological characters can best be achieved using formaldehyde-calcium-cobalt fixative and subsequent storage in an aqueous solution of propylene phenoxetol plus propylene glycol and that the best-lasting histological preparations make use of light-fast, oxidation-resistant dyes and synthetic mounting media with an anti-oxidant.     

Robust Detection of Rare Species Using Environmental DNA: The Importance of Primer Specificity

Environmental DNA (eDNA) is being rapidly adopted as a tool to detect rare animals. Quantitative PCR (qPCR) using probe-based chemistries may represent a particularly powerful tool because of the method’s sensitivity, specificity, and potential to quantify target DNA. However, there has been little work understanding the performance of these assays in the presence of closely related, sympatric taxa. If related species cause any cross-amplification or interference, false positives and negatives may be generated. These errors can be disastrous if false positives lead to overestimate the abundance of an endangered species or if false negatives prevent detection of an invasive species. In this study we test factors that influence the specificity and sensitivity of TaqMan MGB assays using co-occurring, closely related brook trout (Salvelinus fontinalis) and bull trout (S. confluentus) as a case study. We found qPCR to be substantially more sensitive than traditional PCR, with a high probability of detection at concentrations as low as 0.5 target copies/µl. We also found that number and placement of base pair mismatches between the Taqman MGB assay and non-target templates was important to target specificity, and that specificity was most influenced by base pair mismatches in the primers, rather than in the probe. We found that insufficient specificity can result in both false positive and false negative results, particularly in the presence of abundant related species. Our results highlight the utility of qPCR as a highly sensitive eDNA tool, and underscore the importance of careful assay design.     

The influence of light on locomotion in the gastropod melibe leonina

In this study, we investigated the effects of light on both the locomotion of intact animals and the swim motor program expressed by isolated brains in the gastropod Melibe leonina. Spontaneous locomotion (crawling and swimming) was examined during a period of natural lighting (L:D) to establish normal behavior, and then under two different light regimes: constant darkness (D:D) and constant light (L:L). In L:D, there was significantly more locomotor activity at night than during the day and this pattern continued in D:D. However, in L:L, activity was substantially reduced at all times. Using isolated brain preparations, we further demonstrated that the swim motor program was rapidly inhibited by light, and that this inhibition was mediated by the eyes. These results indicate that M. leonina displays a nocturnal activity pattern, and that light has a strong inhibitory effect on locomotion in the intact animal and on the swim motor program expressed by the isolated brain.     

What predicts the use by brook trout (Salvelinus fontinalis) of terrestrial invertebrate subsidies in headwater streams?

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Living in the branches: population dynamics and ecological processes in dendritic networks

Spatial structure regulates and modifies processes at several levels of ecological organization (e.g. individual/genetic, population and community) and is thus a key component of complex systems, where knowledge at a small scale can be insufficient for understanding system behaviour at a larger scale. Recent syntheses outline potential applications of network theory to ecological systems, but do not address the implications of physical structure for network dynamics. There is a specific need to examine how dendritic habitat structure, such as that found in stream, hedgerow and cave networks, influences ecological processes. Although dendritic networks are one type of ecological network, they are distinguished by two fundamental characteristics: (1) both the branches and the nodes serve as habitat, and (2) the specific spatial arrangement and hierarchical organization of these elements interacts with a species' movement behaviour to alter patterns of population distribution and abundance, and community interactions. Here, we summarize existing theory relating to ecological dynamics in dendritic networks, review empirical studies examining the population- and community-level consequences of these networks, and suggest future research integrating spatial pattern and processes in dendritic systems.