IUB commission of editors of biochemical journals the citation of bibliographic references in biochemical journals recommendations (1971)

A pentose-rich acidic glycoprotein was isolated from protease digested bovine vitreous humor by fractionation on an AG1-X2 column using NaCl solution gradient.The material eluted at 0.35 M NaCl (glycoprotein) was electrophoretically heterogeneous at pH 8.6 after partial purification on Sephadex G-25. Gel filtration on G-100 resolved the glycoprotein into two fractions. These fractions differ in molecular weight; mol. wt approx. 95 000 material consisted of two components on electrophoresis and mol. wt approx. 28 000 material showed only a single component on electrophoresis. The lower molecular weight component was re-chromatographed on Sephadex G-100 yielding a single orcinol positive component which gave a homogeneous band on gel electrophoresis.Quantitative analysis of this material gave 30% protein, 7.0% pentose, 18.7% glucosamine, 9.2% galactosamine, 10.9% hexuronic acid and 16.1% hexose.Treatment with 0.5 M NaOH at 20°C for 24 h resulted in a 50% decrease in the threonine content suggesting the possible involvement of this amino acid in the protein-carbohydrate linkage group.Paper chromatography of the fraction hydrolysate demonstrated the presence of glucurone, xylose, arabinose, glucose and galactose.     

Thermoregulation and heterothermy in some of the smaller flying foxes (Megachiroptera) of New Guinea

Summary Body temperature, heterothermy, oxygen consumption, heart rate, and evaporative water loss were studied in four species of flying foxes (Megachiroptera), Dobsonia minor, Nyctimene major, Nyctimene albiventer, and Paranyctimene raptor, from the vicinity of Madang on the north coast of New Guinea.The thermoregulatory response of D. minor resembled that of most other placental mammals weighing 80 to 100 g. Body temperatures were relatively stable at ambient temperatures between 5 and 34°. The mean oxygen consumption at rest between 30 and 35° was 1.26 cc O₂ (g·hr)^–1. At ambient temperatures between 5 and 35° evaporative water loss averaged 4.5 mg (g·hr)^–1 and increased sharply at higher temperatures. When subjected to heat stress the animals panted, salivated, and licked the wings, belly, and uropatagium. At temperatures above 38° the ratio of heat lost through evaporation to heat production exceeded 1. Minimal heart rates in resting animals near thermal neutrality were approximately 275/min.In those parameters measured, N. major which weighed about 80 g resembled D. minor. Nyctimene albiventer and P. raptor weigh less than 30 g and are among the smallest of the flying foxes. Each shows both homeothermic and heterothermic patterns of response. At an ambient temperature of 35° the minimal oxygen consumption of homeothermic N. albiventer and P. raptor were 1.43 and 1.38 cc O₂ (g·hr)^–1, respectively. Oxygen consumption of homeothermic N. albiventer at 25°, 2.59 cc O₂ (g.hr)^–1, was almost quadruple that of torpid animals at the same temperature. During the daytime both N. albiventer and P. raptor characteristically allowed their body temperatures to fall to near 25°. Both readily aroused from the hypothermic state through physiological means. Heart rates of homeothermic N. albiventer resting at 35° ranged from 312 to 326/min while those of animals torpid at 25° were 88 to 96/min.The capacity for heterothermy has not previously been demonstrated in any members of the Megachiroptera, but our data indicate that it can occur on a daily basis in N. albiventer and P. raptor. This capacity appears to be related to size since it occurs in none of the larger flying foxes so far studied.The data presently available indicate that the relation of body weight to standard metabolism in the Megachiroptera is similar to that of the other placental mammals. In the species we studied, thermal conductances were higher, and heart rates, lower than predicted for mammals of their sizes.These studies were carried out during the 1969 Alpha Helix Expedition to New Guinea and were supported in part by grants GB-5139, GB-3656, and GB-8445 from the U. S. National Science Foundation.     

Polymorphism analysis and supertype definition of swine leukocyte antigen class I molecules in three-way crossbred (Landrace,Duroc, and Yorkshire) pigs: implications for the vaccine development of African swine fever virus

正Dear Editor,Swine major histocompatibility complex (MHC) is a highly polymorphic gene in pigs and is also called swine leukocyte antigen (SLA)(Fan et al., 2018). SLA is divided into three major categories, SLA Ⅰ (SLA-1,-2,-3), SLA Ⅱ, and SLA Ⅲ(Smith et al., 2005). SLA Ⅰ plays an important role in cellular immunity which can eliminate viruses and other foreign     

Phosphoproteomics identifies microglial Siglec‐F inflammatory response during neurodegeneration

Alzheimer’s disease (AD) is characterized by the appearance of amyloid‐β plaques, neurofibrillary tangles, and inflammation in brain regions involved in memory. Using mass spectrometry, we have quantified the phosphoproteome of the CK‐p25, 5XFAD, and Tau P301S mouse models of neurodegeneration. We identified a shared response involving Siglec‐F which was upregulated on a subset of reactive microglia. The human paralog Siglec‐8 was also upregulated on microglia in AD. Siglec‐F and Siglec‐8 were upregulated following microglial activation with interferon gamma (IFNγ) in BV‐2 cell line and human stem cell‐derived microglia models. Siglec‐F overexpression activates an endocytic and pyroptotic inflammatory response in BV‐2 cells, dependent on its sialic acid substrates and immunoreceptor tyrosine‐based inhibition motif (ITIM) phosphorylation sites. Related human Siglecs induced a similar response in BV‐2 cells. Collectively, our results point to an important role for mouse Siglec‐F and human Siglec‐8 in regulating microglial activation during neurodegeneration.     

The role of microsite sunlight environment on growth,architecture, and resource allocation in dominant Acacia tree seedlings,in Serengeti,East Africa

Seedling establishment is a critical life history stage for savanna tree recruitment due to variability in resource availability. While tree–grass competition for water is recognized as an important driver of tree seedling mortality, the importance of sunlight exposure on tree seedling performance has received little attention in savanna ecosystems despite variable seedling light environments caused by heterogeneity in biomass of the grass canopy. We studied the seasonal sunlight micro-environment for two dominant East African tree species (Acacia?=?Vachellia) robusta (Burch) and A. tortilis (Forssk) under natural field conditions. In the Serengeti National Park, Tanzania, A. robusta trees occur in tall grasslands of the north (shady) and A. tortilis in the southern short grasslands (less shaded). We also designed a greenhouse experiment to quantify sunlight effects on seedling growth, architecture, and resource allocation traits. In the field, A. robusta seedlings were associated with lower understorey sunlight during the wet season compared to A. tortilis, with this trend switching during the dry season. In the greenhouse experiments, under low sunlight (25% radiation), A. robusta gained height faster than A. tortilis and self-shading among canopy leaves was evident in A. tortilis but not A. robusta. Biomass allocation to leaves, stems, and roots differed between species under different light environments suggesting phenotypic plasticity in response to variable light availability. Our study suggests that microsite light variability should be incorporated in models of the spatial and temporal variability of savanna tree recruitment.

     

Osmotic stress induces gut microbiota community shift in fish

Alteration of the gut microbiota plays an important role in animal health and metabolic diseases. However, little is known with respect to the influence of environmental osmolality on the gut microbial community. The aim of the current study was to determine whether the reduction in salinity affects the gut microbiota and identify its potential role in salinity acclimation. Using Oryzias melastigma as a model organism to perform progressive hypotonic transfer experiments, we evaluated three conditions: seawater control (SW), SW to 50% sea water transfer (SFW) and SW to SFW to freshwater transfer (FW). Our results showed that the SFW and FW transfer groups contained higher operational taxonomic unit microbiota diversities. The dominant bacteria in all conditions constituted the phylum Proteobacteria, with the majority in the SW and SFW transfer gut comprising Vibrio at the genus level, whereas this population was replaced by Pseudomonas in the FW transfer gut. Furthermore, our data revealed that the FW transfer gut microbiota exhibited a reduced renin–angiotensin system, which is important in SW acclimation. In addition, induced detoxification and immune mechanisms were found in the FW transfer gut microbiota. The shift of the bacteria community in different osmolality environments indicated possible roles of bacteria in facilitating host acclimation.     

Anaerobic microbial communities and their potential for bioenergy production in heavily biodegraded petroleum reservoirs

Most of the oil in low temperature, non-uplifted reservoirs is biodegraded due to millions of years of microbial activity, including via methanogenesis from crude oil. To evaluate stimulating additional methanogenesis in already heavily biodegraded oil reservoirs, oil sands samples were amended with nutrients and electron acceptors, but oil sands bitumen was the only organic substrate. Methane production was monitored for over 3000 days. Methanogenesis was observed in duplicate microcosms that were unamended, amended with sulfate or that were initially oxic, however methanogenesis was not observed in nitrate-amended controls. The highest rate of methane production was 0.15 μmol CH₄ g⁻¹ oil d⁻¹, orders of magnitude lower than other reports of methanogenesis from lighter crude oils. Methanogenic Archaea and several potential syntrophic bacterial partners were detected following the incubations. GC–MS and FTICR–MS revealed no significant bitumen alteration for any specific compound or compound class, suggesting that the very slow methanogenesis observed was coupled to bitumen biodegradation in an unspecific manner. After 3000 days, methanogenic communities were amended with benzoate resulting in methanogenesis rates that were 110-fold greater. This suggests that oil-to-methane conversion is limited by the recalcitrant nature of oil sands bitumen, not the microbial communities resident in heavy oil reservoirs.     

Fungal functional ecology: bringing a trait‐based approach to plant‐associated fungi

Fungi play many essential roles in ecosystems. They facilitate plant access to nutrients and water, serve as decay agents that cycle carbon and nutrients through the soil, water and atmosphere, and are major regulators of macro‐organismal populations. Although technological advances are improving the detection and identification of fungi, there still exist key gaps in our ecological knowledge of this kingdom, especially related to function . Trait‐based approaches have been instrumental in strengthening our understanding of plant functional ecology and, as such, provide excellent models for deepening our understanding of fungal functional ecology in ways that complement insights gained from traditional and ‐omics‐based techniques. In this review, we synthesize current knowledge of fungal functional ecology, taxonomy and systematics and introduce a novel database of fungal functional traits (Fun^Fun). Fun^Fun is built to interface with other databases to explore and predict how fungal functional diversity varies by taxonomy, guild, and other evolutionary or ecological grouping variables. To highlight how a quantitative trait‐based approach can provide new insights, we describe multiple targeted examples and end by suggesting next steps in the rapidly growing field of fungal functional ecology.     

Does Formation of Multicellular Colonies by Choanoflagellates Affect Their Susceptibility to Capture by Passive Protozoan Predators?

Microbial eukaryotes, critical links in aquatic food webs, are unicellular, but some, such as choanoflagellates, form multicellular colonies. Are there consequences to predator avoidance of being unicellular vs. forming larger colonies? Choanoflagellates share a common ancestor with animals and are used as model organisms to study the evolution of multicellularity. Escape in size from protozoan predators is suggested as a selective factor favoring evolution of multicellularity. Heterotrophic protozoans are categorized as suspension feeders, motile raptors, or passive predators that eat swimming prey which bump into them. We focused on passive predation and measured the mechanisms responsible for the susceptibility of unicellular vs. multicellular choanoflagellates, Salpingoeca helianthica, to capture by passive heliozoan predators, Actinosphaerium nucleofilum, which trap prey on axopodia radiating from the cell body. Microvideography showed that unicellular and colonial choanoflagellates entered the predator's capture zone at similar frequencies, but a greater proportion of colonies contacted axopodia. However, more colonies than single cells were lost during transport by axopodia to the cell body. Thus, feeding efficiency (proportion of prey entering the capture zone that were engulfed in phagosomes) was the same for unicellular and multicellular prey, suggesting that colony formation is not an effective defense against such passive predators.