Porewater chemistry of inorganic nitrogen compounds in the eastern Skagerrak (NE North Sea)

Porosity, Eh and interstitital nitrogen compounds profiles are given for four locations in the eastern Skagerrak. Sediments down to 30 cm depth, i.e. postindustrial in age, were analysed. The results together with a detailed age determination (²¹⁰Pb) suggest a high degree of both lateral and vertical variability as a result of local bottom topography and currents as well as event-controlled sedimentation processes.     

CONTRIBUTION OF POLLEN MORPHOLOGY TO SYSTEMATICS OF COLLOMIA (POLEMONIACEAE)

Pollen morphology of 14 species of Collomia (Polemoniaceae) was examined by light microscopy, and by both scanning and transmission electron microscopy. Four distinct pollen types were observed which are based principally upon 1) shape, number and distribution of apertures, and 2) surface sculpturing: Type 1—zonocolporate with striate ridges; Type 2—zonocolporate with striato-reticulate ridges; Type 3—pantoporate with radiate ridges; Type 4—pantoporate with irregularly reticulate ridges. Evaluation of pollen morphology reveals considerable discrepancy with respect to presently accepted sectional classification. Collomia grandiflora of sect. Collomia has a pollen type similar to that of members of sect. Collomiastrum and is now interpreted as representing an independent evolutionary line derived from the latter section. Collomia diversifolia of sect. Courtoisia has a pollen morphology similar to that of sect. Collomia. whereas C. heterophylla of the same section possesses pollen unique within the genus. This last pollen type shows close similarity to the pollen of members of Polemonium, Gilia, Leptodactylon, and Ipomopsis. Pollen of C. tinctoria and C. tracyi of sect. Collomia are anomalous within Polemoniaceae. No significant difference in exine stratification was discernible among the four pollen types.     

VEGETATIVE AND FLORAL RELATIONSHIPS AMONG WESTERN NORTH AMERICAN POPULATIONS OF COLLOMIA LINEARIS NUTTALL (POLEMONIACEAE)

Thirty-seven characters were measured on greenhouse grown progenies of twenty-three populations representing, for Collomia linearis, a broad geographical and ecological distribution in western North America. Twelve vegetative and seventeen floral characters showed significant among-population/within-population variance ratios (F-statistics). Overall, floral characters showed higher F-statistics than did vegetative characters. The F-statistics and character means were used to construct phenograms based on weighted similarity measures and single-linkage clustering. With the exception of a homogeneous cluster comprising northern Rocky Mountain OTUs, relationships based on floral characters were geographically random. No clearly defined morphological trends toward increased autogamy were observed in association with geographical or ecological distribution. Several clustering relationships, based on vegetative characters, were interpreted as representing geographically unrelated genotypes convergent with respect to ecotypic differentiation. The most distinctive clusters of OTUs in the vegetative phenogram were associated with subalpine and wet meadow sites, habitats considered as ecologically marginal for the species. Comparison of the two phenograms revealed considerable disparity between relationships based on floral characters and those based on vegetative characters. This disparity lends support to the hypothesis that floral and vegetative character combinations are subject to independent selective processes. The absence of polyploidy or mitotically detectable chromosomal rearrangements indicates that the observed variation among widely separated populations represents either divergence or convergence via genetic differentiation at the diploid level.     

Sensitive fluorescence in situ hybridization signal detection in maize using directly labeled probes produced by high concentration DNA polymerase nick translation

The signal produced by fluorescence in situ hybridization (FISH) often is inconsistent among cells and sensitivity is low. Small DNA targets on the chromatin are difficult to detect. We report here an improved nick translation procedure for Texas red and Alexa Fluor 488 direct labeling of FISH probes. Brighter probes can be obtained by adding excess DNA polymerase I. Using such probes, a 30?kb yeast transgene, and the rp1, rp3 and zein multigene clusters were clearly detected.     

Atomistic details of effect of disulfide bond reduction on active site of Phytase B from Aspergillus niger: A MD Study

The molecular integrity of the active site of phytases from fungi is critical for maintaining phytase function as efficient catalytic machines. In this study, the molecular dynamics (MD) of two monomers of phytase B from Aspergillus niger, the disulfide intact monomer (NAP) and a monomer with broken disulfide bonds (RAP), were simulated to explore the conformational basis of the loss of catalytic activity when disulfide bonds are broken. The simulations indicated that the overall secondary and tertiary structures of the two monomers were nearly identical but differed in some crucial secondary–structural elements in the vicinity of the disulfide bonds and catalytic site. Disulfide bonds stabilize the β-sheet that contains residue Arg66 of the active site and destabilize the α-helix that contains the catalytic residue Asp319. This stabilization and destabilization lead to changes in the shape of the active–site pocket. Functionally important hydrogen bonds and atomic fluctuations in the catalytic pocket change during the RAP simulation. None of the disulfide bonds are in or near the catalytic pocket but are most likely essential for maintaining the native conformation of the catalytic site.

Abbreviations

PhyB - 2.5 pH acid phophatese from Aspergillus niger, NAP - disulphide intact monomer of Phytase B, RAP - disulphide reduced monomer of Phytase B, Rg - radius of gyration, RMSD - root mean square deviation, MD - molecular dynamics.     

Mutualism and asexual reproduction influence recognition genes in a fungal symbiont

Mutualism between microbes and insects is common and alignment of the reproductive interests of microbial symbionts with this lifestyle typically involves clonal reproduction and vertical transmission by insect partners. Here the Amylostereum fungus–Sirex woodwasp mutualism was used to consider whether their prolonged association and predominance of asexuality have affected the mating system of the fungal partner. Nucleotide information for the pheromone receptor gene rab1, as well as the translation elongation factor 1α gene and ribosomal RNA internal transcribed spacer region were utilized. The identification of rab1 alleles in Amylostereum chailletii and Amylostereum areolatum populations revealed that this gene is more polymorphic than the other two regions, although the diversity of all three regions was lower than what has been observed in free-living Agaricomycetes. Our data suggest that suppressed recombination might be implicated in the diversification of rab1, while no evidence of balancing selection was detected. We also detected positive selection at only two codons, suggesting that purifying selection is important for the evolution of rab1. The symbiotic relationship with their insect partners has therefore influenced the diversity of this gene and influenced the manner in which selection drives and maintains this diversity in A. areolatum and A. chailletii.