Calorimetric investigations of the helix-coil conversion of phenylalaninespecific transfer ribonucleic acid

The enthalpy of the helix-coil conversion of phenylalaninespecific transfer ribonucleic acid from brewer's yeast (tRNA^Phe_{brewer's yeast}) has been measured using both an LKB 10700-2 batch miciocalorimeter and an adiabatic differential scanning calorimeter. In the mixing calorimeter the conversion from coil to helix was induced by mixing a tRNA^Phe solution with a solution containing an excess of MgSO₄. We measured the enthalpy of this reaction stepwise in the temperature range from +9 to +60° C. For the enthalpy of folding of tRNA^Phe from coil to helix this method yielded the remarkably high value of ?310 $\text{kcal}\text{mole}$ of tRNA^Phe. With the differential scanning calorimeter in which the helix-coil conversion is simply induced by raising the temperature we found a value of +240 $\text{kcal}\text{mole}$ of tRNA^Phe at a Tm value of 76° C and a value of +200 $\text{kcal}\text{mole}$ of tRNA^Phe at a T_m value of 50° C. A comparison of the apparent van't Hoff enthalpies with the calorimetrically measured enthalpies shows, that the cooperativity of the system increases continually with rising melting temperatures - which are achieved by increasing Mg²⁺ concentrations - reaching a constant value at about 57° C. Above this temperature value the thermodynamic behaviour of the helix-coil conversion of tRNA^Phe may be approximately described by the model of an all-or-none process.     

Electrostatic interactions in proteins: Calculations of the electrostatic term of free energy and the electrostatic potential field

The pH-dependence of the electrostatic energy of interactions between titratable groups is calculated for some well studied globular proteins: basic pancreatic trypsin inhibitor, sperm whale myoglobin and tuna cytochrome c. The calculations are carried out using a semi-empirical appraach in terms of the macroscopic model based on the Kirkwood-Tanford theory. The results are discussed in the light of their physicochemical and biological properties. It was found that the pH-dependence of the electrostatic energy correlates with the III–IV transition of cytochrome c. The electrostatic field of the cysteine proteinase inhibitor, cystatin, was calculated in two ways. In the first one, the electrostatic field created by the pH dependent charges of the ionizable groups and peptide dipoles was calculated using the approach proposed. In the second one, the finite-difference method was used. The results obtained by the two methods are in overall agreement. The calculated field was discussed in terms of the binding of cystatin to papain.     

Patterning of the head in hydra as visualized by a monoclonal antibody, II. The initiation and localization of head structures in regenerating pieces of tissue

The body column of hydra is polarized such that a new head will regenerate from the apical end when both extremities are removed. This is due to a graded property of the tissue termed the head activation gradient. The aim of the experiments presented here was to determine what events connect a two-dimensional segment of the activation gradient in an isolated piece of tissue with the formation of a head structure at a particular location. To this end, tissue pieces with three different shapes were excised and analyzed during and after regeneration. The most apical tissue of each piece was labeled with the DNA-intercalating dye, DAPI, and the area where developmental changes were occurring was monitored using the monoclonal antibody CP8 (Javois et al., 1986). First, it was shown that polarity of regeneration was maintained regardless of the fraction of body length included in the excised pieces. Second, while head structures usually formed from the original apical tissue, they could be located anywhere in the regenerate. This was an effect of the healing process which shaped the apical edge differently in different pieces. Third, early CP8 binding occurred in similarly shaped areas suggesting that patterning events were initiated in a contiguous manner wherever apical tissue was located. And finally, not all of the CP8-marked tissue successfully formed structures. Apparently some regions were favored to continue the patterning process, and these in turn extinguished the process in neighboring regions.     

Expression, Purification, Characterization, and X-Ray Analysis of Selenomethionine 215 Variant of Leukocyte Collagenase

Matrix metalloproteinases belong to the superfamily of metzincins containing, besides a similar topology and a strictly conserved zinc environment, a 1,4-tight turn with a strictly conserved methionine residue at position three (the so called Met-turn [Bode et al. (1993) FEBS 331, 134–140; Stöcker et al. (1995) Protein Sci. 4, 823–840]. The distal S–CH₃ moiety of this methionine residue forms the hydrophobic basement of the three His residues liganding the catalytic zinc ion. To assess the importance of this methionine, we have expressed the catalytic domain of neutrophil collagenase (rHNC, residues Met80–Gly242) in the methionine auxotrophic Escherichia coli strain B834[DE3](hsd metB), with the two methionine residues replaced by Selenomethionine. Complete replacement was confirmed by amino acid analysis and electrospray mass spectrometry. The folded and purified enzyme retained its catalytic activity, but showed modifications which are reflected in changed kinetic parameters. The Met215SeMet substitution caused a decrease in conformational stability upon urea denaturation. The X-ray crystal structure of this Selenomethionine rHNC was virtually identical to that of the wild-type catalytic domain except for a very faint local disturbance around the sulfur-seleno substitution site.     

Specific phosphorylation of a protein in calcium accumulating endoplasmic reticulum from rat parotid glands following stimulation by agonists involving cAMP as second messenger

Stimulation of secretion in exocrine cells by agonists involving cAMP as second messenger is associated with the phosphorylation of a specific membrane-associated 22.4-kDa protein (protein III) (Jahn et al.). Here it is shown by subcellular fractionation of rat parotid gland lobules that protein III is associated with the endoplasmic reticulum. The submicrosomal fractions containing protein III, also contain the ATP-dependent microsomal calcium pump activity. Protein III in microsomal subfractions can be phosphorylated in vitro with catalytic subunit from cAMP-dependent protein kinase. Phosphorylated protein III contains exclusively P-serine. Protein III can be removed from ER-membranes with acid chloroform-methanol or Triton X-114, but not by high salt wash indicating that it is tightly associated with the membranes. Protein III is smaller than phospholamban and, in contrast to phospholamban, resistant to heating in SDS. A relationship between phosphorylation of protein III and microsomal calcium sequestration is discussed.     

Further Characteristics of the ATP-Stimulated Uptake of Calcium into Chromaffin Granules

Abstract: The ATP-stimulated uptake of ⁴⁵Ca²⁺ [and [³H](-)-noradrenaline ([³H]NA)] into chromaffin granules and that into mitochondria are driven by a protonic gradient ΔμH⁺, composed of the components ΔpH (concentration gradient of protons) and ΔΨ(electrical potential difference). The granular ATPase pumps protons into the matrix (ΔpH inside acid, ΔΨ positive), but the mitochondrial ATPase ejects protons from the matrix (ΔpH alkaline, ΔΨ negative inside). To show different driving forces of uptake, the rate of the ATP-stimulated uptake of ⁴⁵Ca²⁺ (and [³H]NA) into chromaffin granules was compared with the rate of the ATP-stimulated uptake of ⁴⁵Ca²⁺ into mitochondria (adrenomedullary or rat liver). In the presence of nitrate, the rate of the ATP-stimulated uptake of ⁴⁵Ca²⁺ into chromaffin granules is higher than in the presence of acetate, because the lyotropic anion nitrate stimulates the granular ATPase and increases ΔpH (acid inside). Compared with nitrate, the rate of the ATP-stimulated uptake of ⁴⁵Ca²⁺ into mitochondria is higher in the presence of the proton-carrying anion acetate, which, after permeation, provides protons for ejection by the ATPase. In the absence of ATP, a valinomycin-mediated potassium influx (ΔΨ inside positive) stimulates the granular uptake of [³H]NA, which has an electrogenic component, but not the granular uptake of ⁴⁵Ca²⁺, which is electroneutral. The electrogenic uptake of ⁴⁵Ca²⁺ into mitochondria is stimulated by a valinomycin-mediated potassium efflux (ΔΨ negative inside). The ATP-stimulated uptake of ⁴⁵Ca²⁺ into chromaffin granules is sensitive to ruthenium red, suggesting a carrier-mediated mechanism of uptake, and it is sensitive to atractyloside, indicating the simultaneous uptake of ATP. After collapse of ΔpH by ammonia, the ATP-stimulated uptake of ⁴⁵Ca²⁺ into chromaffin granules is abolished, but not that into mitochondria. In the presence of ammonia, the rate of the ATP-stimulated uptake of [³H]NA is very low, and an ATP-independent uptake of ⁴⁵Ca²⁺ into chromaffin granules is observed which is similar to the ATP-independent Ca²⁺/Na⁺ exchange at the granular membrane.