Maternal antioxidant concentrations after uncomplicated pregnancies

Background: To analyse the post-partum concentrations of intra- and extra-cellular blood antioxidants in women with uncomplicated pregnancies.

Methods: Whole blood and plasma thiols, plasma vitamin E and C, serum cholesterol and triglyceride, ferric reducing ability of plasma (FRAP) concentrations were compared between women delivered by caesarean section (n=17) or spontaneous delivery (n=10). A repeated mixed model was used for statistical analysis.

Results: The majority of whole blood thiols increased significantly in both groups the first days post-partum. However, within the caesarean group free cysteine, oxidised cysteine, homocysteine and glutathione and plasma cysteine and homocysteine levels dropped significantly after 24 h, while FRAP levels peaked significantly in this group. Plasma vitamin E levels decreased significantly in both groups within 24 to 48 h after delivery. Independent of the way of delivery whole blood and plasma thiols were significantly increased and vitamin E levels were significantly decreased 3 months post-partum while plasma vitamin C levels and FRAP were unchanged compared to ante-partum levels.

Discussion: Decreased plasma vitamin E levels shortly post-partum are associated with decreased lipid peroxidation. The 24 h post-partum drop of some plasma and whole blood thiols in the caesarean group may be due to prolonged fasting.     

Complete genome sequence of Mycobacterium phlei type strain RIVM601174

Mycobacterium phlei is a rapidly growing nontuberculous Mycobacterium species that is typically nonpathogenic, with few reported cases of human disease. Here we report the whole genome sequence of M. phlei type strain RIVM601174.     

Do surname differences mirror dialect variation?

Our focus in this paper is the analysis of surnames, which have been proven to be reliable genetic markers because in patrilineal systems they are transmitted along generations virtually unchanged, similarly to a genetic locus on the Y chromosome. We compare the distribution of surnames to the distribution of dialect pronunciations, which are clearly culturally transmitted. Because surnames, at the time of their introduction, were words subject to the same linguistic processes that otherwise result in dialect differences, one might expect their geographic distribution to be correlated with dialect pronunciation differences. In this paper we concentrate on the Netherlands, an area of only 40,000 km2, where two official languages are spoken, Dutch and Frisian. We analyze 19,910 different surnames, sampled in 226 locations, and 125 different words, whose pronunciation was recorded in 252 sites. We find that, once the collinear effects of geography on both surname and cultural transmission are taken into account, there is no statistically significant association between the two, suggesting that surnames cannot be taken as a proxy for dialect variation, even though they can be safely used as a proxy for Y-chromosome genetic variation. We find the results historically and geographically insightful, hopefully leading to a deeper understanding of the role that local migrations and cultural diffusion play in surname and dialect diversity.     

Über festlegung und einhaltung der mittleren dichte von insektenpopulationen

Zusammenfassung Die Arbeit verzichtet bewußt auf empirische Beweise jeder Art, weil sie sich mit Vorgängen befaßt, die sich über lange Zeit erstrecken und deshalb der Beobachtung und dem Experiment einstweilen nicht zugänglich sind. Alle derartigen Versuche konnen bisher nicht überzeugen.Regulation der Populationsdichte liegt vor, wenn es irgendwelche endlichen Grenzen gibt, die vor ihr auf die Dauer nicht über- bzw. unterschritten werden. Da die Populationsdichte die auf sie ausgeübten Einflüsse im Laufe der Zeit summiert bzw. multipliziert, vermögen Zufallsfaktoren die Einhaltung solcher Grenzen nicht zu garantieren. Die Wetterereignisse konnen in ihrem zeitlichen Ablauf in periodischer und eventuell auch in aperiodischer Art von der Zufallserwartung abweichen, ohne dadurch aber die Überschreitung der Grenzen durch wetterbedingten Massenwechsel zu verhindern oder wesentlich zu verzögern. Auch das Zusammenw-irken mehrerer dichteunabhängiger Faktoren führt nicht zur Regulation.Wanderungen von Insekten können nur darn regulierend wirken, wenn sie in Abhängigkeit vor der Populationsdichte auftreten. Der regulierende Einfluß schützender Stellen im Biotop ist eine Folge intraspezifischer Konkurrenz. Änderungen in der Häufigkeit vor Genen oder Genanordnungen, welche eventuell mit dem Massenwechsel verbunden sind, können ebenfalls höchstens dann eine regulierende Wirkung haben, wenn sie dichteabhängig erfolgen.Alle dichteabhängigen Faktoren werden nicht nur vor der Populationsdichte, sondern auch vor anderen (diehteunabhängigen) Umweltkomponenten beeinflußt. Trotzdem ist die Dichteabhängigkeit das einzig mögliche regulierende Prinzip. Das Begriffssystem der Kybernetik gestattet eine eindeutige Beschreibung der Regulationsvorgänge. Dabei zeigt es sich, daß die Einhaltung irgendwelcher endlichen Dichtegrenzen und die Bestimmung der mittleren Populationsdichte zwei zwar zusammengehörige, aber wesensmäßig verschiedene Prozesse sind. Dichteunabhängige Faktoren (vor allem das Wetter) wirken einerseits als Führungsgröße, andererseits als kausales Agens für die Störgröße, dichteabhängige, vor allem die intraspezifische Konkurrenz, als Regler.Zur Beseitigung der bestehenden begrifflichen Schwierigkeiten wird vorgeschlagen, die Bezeichnung Regulation auf den Vorgang im Regelkreis (Populationsdichte — dichteabhängiger Faktor — dichteabhängige Sterblichkeit und Fruchtbarkeit - Populationsdichte) zu beschränken und die Festlegung der mittleren Populationsdichte als Determination zu bezeichnen. Das Wetter ist kein Regulations-, sondern ein Massenwechselfaktor, das Klima dagegen ist ein Determinationsfaktor.Die bisherigen Meinungsverschiedenheiten haben außer Mißverständnissen hauptsächlich drei Ursachen: 1. die ungenügende begriffliche Trennung zwischen Massenwechsel und Regulation, 2. ungenaue Vorstellungen über die Auswirkung dichteunabhängiger Faktoren, 3. fehlende Unterscheidung zwischen Regulation und Determination.     

Endogenous Purification Reveals GREB1 as a Key Estrogen Receptor Regulatory Factor

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Highlights? A proteomic method identifies protein-protein interaction in primary tumors ? GREB1 is the top estrogen-induced ER-interacting protein ? GREB1 is an essential ER cofactor recruited to chromatin ? GREB1 is an independent prognostic marker     

Determination of the Diversity of Rhodopirellula Isolates from European Seas by Multilocus Sequence Analysis

In the biogeography of microorganisms, the habitat size of an attached-living bacterium has never been investigated. We approached this theme with a multilocus sequence analysis (MLSA) study of new strains of Rhodopirellula sp., an attached-living planctomycete. The development of an MLSA for Rhodopirellula baltica enabled the characterization of the genetic diversity at the species level, beyond the resolution of the 16S rRNA gene. The alleles of the nine housekeeping genes acsA, guaA, trpE, purH, glpF, fumC, icd, glyA, and mdh indicated the presence of 13 genetically defined operational taxonomic units (OTUs) in our culture collection. The MLSA-based OTUs coincided with the taxonomic units defined by DNA-DNA hybridization experiments. BOX-PCR supported the MLSA-based differentiation of two closely related OTUs. This study established a taxon-area relationship of cultivable Rhodopirellula species. In European seas, three closely related species covered the Baltic Sea and the eastern North Sea, the North Atlantic region, and the southern North Sea to the Mediterranean. The last had regional genotypes, as revealed by BOX-PCR. This suggests a limited habitat size of attached-living Rhodopirellula species.The biogeography of microorganisms describes the habitat size of the species and the distribution of microorganisms on Earth. The experimental approaches depend on the focus of the studies. Habitats are often analyzed by environmental microbiologists with genetic-fingerprinting techniques, with up to 200 bands or fragments representing the whole community. Although the taxonomic resolution of these operational taxonomic units (OTUs) is limited, the studies revealed a community biogeography (22). Medical microbiologists analyze the alleles of housekeeping genes of microorganisms to gain insight into the epidemiology of pathogens, the population biogeography (2). This strain-specific, fine-scale taxonomic resolution within a species is well suited to observance of recent dispersal events. At the species level, multilocus sequence typing (MLST) and analysis (MLSA), which were developed for intraspecies and intragenus specific studies, respectively, consist of the sequences of several (at least seven) housekeeping gene fragments concatenated to an approximately 5-kilobase alignment (17). Recent MLSA studies revealed its applicability to marine isolates and the analysis of biogeographic patterns: Alteromonas macleodii isolates could be grouped in an epipelagic and an abyssal clade (6), and strains of Pseudomonas aeruginosa were genetically well separated into groups of coastal and oceanic origin (8). However, for Salinibacter ruber strains, biogeographical distinctness was not resolved in an MLSA study but showed allopatry in a metabolic analysis (31). Several studies used MLSA together with DNA-DNA hybridization (DDH) for the delineation of new species, e.g., for Vibrio and Ensifer spp. (20, 36).In the biogeography of microorganisms, the experimental proof of a local genetic evolution was first revealed at sample sites that were physically separated by over 18,000 km (39). Large populations and the small size of microbes have been considered as facilitators for dispersal over long distances, eventually establishing cosmopolitan microbial populations. On the other hand, the smallest spatial scale of a microbial species in an open system has not been investigated. Attached-living bacteria disperse only during a distinct, short time span in their lives. This limitation of the dispersal time stimulated this study of the biogeography of Rhodopirellula baltica in European seas.R. baltica is a planctomycete with typical morphological features. The peptidoglycanless bacteria have an intracellular compartmentation: the riboplasm with the nucleoid is separated by a membrane from the surrounding paryphoplasm. Cells attach with a holdfast substance to surfaces or, in culture, to themselves, forming typical rosettes. Proliferation occurs by budding, and offspring cells live free in the water column: they are motile with a flagellum until they settle on the sediment (4).Seventy recently isolated strains affiliated according to the 16S rRNA gene analysis with R. baltica SH1^T as the closest validly described species (40). The 16S rRNA gene sequences do not offer sufficient information at the species level. A dissimilarity of the 16S rRNA genes of more than 3%, recently reduced to 1.3% (34, 35), indicates that the strains under consideration belong to two species. These thresholds yielded in our strain collection, according to an ARB-based calculation, five or eight operational taxonomic units besides the species R. baltica (40). For strains with highly identical sequences, whole-genome DDH experiments have to be performed to identify the affiliation to established species. Recently, multilocus sequence analyses have emerged as a possible alternative method. Our strain collection comprised many strains with a 16S rRNA gene sequence very closely related to that of R. baltica SH1^T. To gain insight into the genetic identity of the isolates on the species level and the habitat sizes of the species, we developed a multilocus sequence analysis and applied it to the strain collection. The MLSA results were calibrated with a DDH study. The closely related strains were additionally characterized by BOX-PCR, a fingerprinting method (15). Transmission electron microscopy (EM) was performed on some isolates to support the identification as Planctomycetes and to visualize morphological differences between strains.     

Phosphatidylinositol 4-kinasebeta is critical for functional association of rab11 with the Golgi complex

Phosphatidylinositol 4-kinasebeta (PI4Kbeta) plays an essential role in maintaining the structural integrity of the Golgi complex. In a search for PI4Kbeta-interacting proteins, we found that PI4Kbeta specifically interacts with the GTP-bound form of the small GTPase rab11. The PI4Kbeta-rab11 interaction is of functional significance because inhibition of rab11 binding to PI4Kbeta abolished the localization of rab11 to the Golgi complex and significantly inhibited transport of vesicular stomatitis virus G protein from the Golgi complex to the plasma membrane. We propose that a novel function of PI4Kbeta is to act as a docking protein for rab11 in the Golgi complex, which is important for biosynthetic membrane transport from the Golgi complex to the plasma membrane.