Ultraviolet sunscreen compounds in epiphytic red algae from mangroves

Epiphytic red algae of the order Ceramiales from mangroves and salt marshes (nine species from Bostrychia, three from Stictosiphonia and four from Caloglossa) produce varying levels of the UV-absorbing compounds mycosporine-glycine, shinorine, porphyra-334, palythine, asterina-330 and palythinol, a suite of substances chemically assigned as mycosporine-like amino acids (MAAs). Mean MAA levels varied from 0.02 to 12.8 mg g^–1 DW in field-collected and laboratory cultured specimens. While in field samples of Bostrychia montagneiHarvey, Bostrychia radicans (Montagne) Montagne and Caloglossa apomeiotica J.West et G.Zuccarello MAA concentrations were generally higher compared to cultured plants of the same taxa, Bostrychia tenella(Lamouroux) J.Agardh did not show such a difference. Catenella caespitosa (Withering) L.Irvine, Catenella impudica (Montagne) J.Agardh and Catenella nipae Zanardini (Gigartinales, Caulacanthaceae) produce two novel UV-absorbing compounds: MAA-1 (1.4–4.3 mg g ^–1 DW) and MAA-2 (0.1–1.0 mg g^–1 DW), which absorb at 334 nm and 320 nm, respectively. In laboratory culture of Bostrychia moritziana when photosynthetically active radiation (PAR) was increased from 20 to 40 mol photons m^–2 s^–1, the total level of palythinol increased by 85% (from 2.0 to 3.7 mg g^–1 DW). In a culture of Caloglossa leprieurii when PAR was increased from 40 to 80 mol m^–2 s^–1the porphyra-334 content increased by 77% (from 3.1 to 5.5 mg g^–1 DW). Extremely high MAA contents of >30 mg g^–1 DW were detected in mature tetrasporangial sori prepared from two isolates of laboratory-cultured reproductive Caloglossa apomeiotica compared to vegetative plants (about 10 mg MAAs g^–1 DW) indicating tetraspores loaded up with UV-sunscreens. All data demonstrate that mangrove red algae contain high MAA concentrations, particularly the reproductive structures, and hence these compounds may act as biochemical photoprotectants against exposure to UV-radiation.     

Negative binomial additive models

The generalized additive model is extended to handle negative binomial responses. The extension is complicated by the fact that the negative binomial distribution has two parameters and is not in the exponential family. The methodology is applied to data involving DNA adduct counts and smoking variables among ex-smokers with lung cancer. A more detailed investigation is made of the parametric relationship between the number of adducts and years since quitting while retaining a smooth relationship between adducts and the other covariates.     

Phenolic Compounds in the Embryo Development of Several Northern Hemisphere Fucoids

Abstract: Light and electron microscopy were used to study the involvement of phenolic compounds in the early development of the Northern Hemisphere fucoids, Fucus serratus (L.), Fucus spiralis (L.) and Himanthalia elongata (L.) S. F. Gray. Phenolic compounds, packaged within physodes are a major cytoplasmic component of brown algae. Physodes accumulate at the zygote periphery early in development and are secreted into the primary zygote wall. At germination, physodes accumulate at the rhizoid tip. Physodes, together with other wall components, contribute to the development of the cell plate. Good evidence already exists for the involvement of phenolic compounds in the development of Southern Hemisphere fucoids, and this study shows that phenolics play a similar role in the Northern Hemisphere. Consequently, their perceived role as herbivore deterrents in Northern Hemisphere species may be a consequence of their role in wall construction.     

Genetic and Epigenetic Somatic Alterations in Head and Neck Squamous Cell Carcinomas Are Globally Coordinated but Not Locally Targeted

Background

Solid tumors, including head and neck squamous cell carcinomas (HNSCC), arise as a result of genetic and epigenetic alterations in a sustained stress environment. Little work has been done that simultaneously examines the spectrum of both types of changes in human tumors on a genome-wide scale and results so far have been limited and mixed. Since it has been hypothesized that epigenetic alterations may act by providing the second carcinogenic hit in gene silencing, we sought to identify genome-wide DNA copy number alterations and CpG dinucleotide methylation events and examine the global/local relationships between these types of alterations in HNSCC.

Methodology/Principal Findings

We have extended a prior analysis of 1,413 cancer-associated loci for epigenetic changes in HNSCC by integrating DNA copy number alterations, measured at 500,000 polymorphic loci, in a case series of 19 primary HNSCC tumors. We have previously demonstrated that local copy number does not bias methylation measurements in this array platform. Importantly, we found that the global pattern of copy number alterations in these tumors was significantly associated with tumor methylation profiles (p<0.002). However at the local level, gene promoter regions did not exhibit a correlation between copy number and methylation (lowest q = 0.3), and the spectrum of genes affected by each type of alteration was unique.

Conclusion/Significance

This work, using a novel and robust statistical approach demonstrates that, although a “second hit” mechanism is not likely the predominant mode of action for epigenetic dysregulation in cancer, the patterns of methylation events are associated with the patterns of allele loss. Our work further highlights the utility of integrative genomics approaches in exploring the driving somatic alterations in solid tumors.     

Natural succession of macroalgal-dominated epibenthic assemblages at different water depths and after transplantation from deep to shallow water on Spitsbergen

In the current study, we investigated the primary succession of seaweeds over different time periods at different water depths. Furthermore, we followed the succession of field-grown benthic communities of different successional age, developing on ceramic tiles, prior to and after transplantation from 8 to 0.5 m water depth. The transplantation simulated changes associated with the break up of sea-ice cover, e.g. light regime or wave exposure. For this purpose, we transplanted 12 and 21-month old communities, grown at 8 m water depth, together with a set of sterile tiles, onto rafts, floating in 0.5 m water depth. Our results describe for the first time the succession of macroalgal communities in the Arctic and give important insights into the effect of disturbance of differently aged communities. The primary succession at 0.5 m water depth was mainly driven by Bacillariophyta and filamentous green algae like Urospora sp. and Ulothrix implexa. Twelve-month old communities at 8 m water depth are dominated by members of the Ectocarpales (Phaeophyceae), like Pylaiella littoralis, P. varia, and Ectocarpus siliculosus and the green alga U. implexa, whereas the 21-month old community showed a higher cover of the green algal class Ulvophyceae and sessile invertebrates. After transplantation to near surface conditions, species composition of the communities changed, but this effect was differently strong between communities of different age.