MRI-Only Based Radiotherapy Treatment Planning for the Rat Brain on a Small Animal Radiation Research Platform (SARRP)

Computed tomography (CT) is the standard imaging modality in radiation therapy treatment planning (RTP). However, magnetic resonance (MR) imaging provides superior soft tissue contrast, increasing the precision of target volume selection. We present MR-only based RTP for a rat brain on a small animal radiation research platform (SARRP) using probabilistic voxel classification with multiple MR sequences. Six rat heads were imaged, each with one CT and five MR sequences. The MR sequences were: T1-weighted, T2-weighted, zero-echo time (ZTE), and two ultra-short echo time sequences with 20 μs (UTE1) and 2 ms (UTE2) echo times. CT data were manually segmented into air, soft tissue, and bone to obtain the RTP reference. Bias field corrected MR images were automatically segmented into the same tissue classes using a fuzzy c-means segmentation algorithm with multiple images as input. Similarities between segmented CT and automatic segmented MR (ASMR) images were evaluated using Dice coefficient. Three ASMR images with high similarity index were used for further RTP. Three beam arrangements were investigated. Dose distributions were compared by analysing dose volume histograms. The highest Dice coefficients were obtained for the ZTE-UTE2 combination and for the T1-UTE1-T2 combination when ZTE was unavailable. Both combinations, along with UTE1-UTE2, often used to generate ASMR images, were used for further RTP. Using 1 beam, MR based RTP underestimated the dose to be delivered to the target (range: 1.4%-7.6%). When more complex beam configurations were used, the calculated dose using the ZTE-UTE2 combination was the most accurate, with 0.7% deviation from CT, compared to 0.8% for T1-UTE1-T2 and 1.7% for UTE1-UTE2. The presented MR-only based workflow for RTP on a SARRP enables both accurate organ delineation and dose calculations using multiple MR sequences. This method can be useful in longitudinal studies where CT’s cumulative radiation dose might contribute to the total dose.     

The porcine LH/hCG receptor. Characterization and purification

Porcine luteal LH/hCG receptor (LH/hCG R) was solubilized with 70-80% recovery from the crude plasma membrane fraction by Triton X-100 in the presence of 25% glycerol and protease inhibitors. The solubilized receptor maintained 90% of original activity at -60 degrees C for 90 days. Equilibrium association constant (Ka) values of 1.92, 2.22, and 2.03 X 10(10) M-1 were observed for the whole homogenate, plasma membrane fraction, and solubilized LH/hCG R preparations, respectively. The specific binding capacity for the same fractions were 49, 70, 55 fmol/mg protein, respectively. Complexes of LH/hCG R and Triton X-100 were resolved into two components with approximate Mr = 2.7 X 10(5) and 5.4 X 10(5) by gel filtration on Sepharose 6B and two glycoprotein components by chromatography on concanavalin A-Sepharose. Solubilized porcine LH/hCG R was purified by two cycles of affinity chromatography on highly purified hCG-Sepharose with an overall recovery of 30-35% of the initial activity in the Triton extract. Purified porcine LH/hCG R had a specific binding capacity of 2300 pmol/mg protein and a Ka = 1.5 X 10(10) M-1. Silver staining of sodium dodecyl sulfate-polyacrylamide gel electrophoresis gels demonstrated that the major protein in porcine LH/hCG R preparations has Mr = 68,000. A weakly staining band at Mr = 45,000 was also observed in the purified receptor preparation. Analysis of iodinated purified LH/hCG R by autoradiography has confirmed these results. Porcine LH/hCG R was purified 40,000-fold by this method.     

Genetic study of the Evens, an ancient human population of eastern Siberia

Three territorial subgroups of reindeer breeders, fishermen, and fur hunters living under conditions of partial isolation in remote parts of the Yakut ASSR, have been investigated with respect to polymorphic genetic systems. Analysis of covariance matrices containing allele frequencies in an array of 12 loci for a large sample of Evens, Nganasans, and reindeer Chukchi indicates that the genetic relationships support known phylogenetic, linguistic, and historical events.     

Radioiodinated 1-(2-fluoro-4-iodo-2,4-dideoxy-beta-L-xylopyranosyl)-2-nitroimidazole: a novel probe for the noninvasive assessment of tumor hypoxia.

1-(2-Fluoro-4-iodo-2,4-dideoxy-beta-L-xylopyranosyl)-2-nitroimidazole (FIAZP) has been synthesized and labeled with radioiodine (125I). Radioiodinated FIAZP is one of a series of sugar-coupled 2-nitroimidazoles developed in our laboratory as probes for noninvasive scintigraphic assessment of tumor hypoxia. An in vivo biodistribution study with [125I]FIAZP in the murine BALB/c EMT-6 tumor model showed a tumor-to-blood ratio of 6, 24 h after injection, with 0.5% of the injected dose present per gram of tumor. These values are several times higher than the respective ratios and distribution values in any of the organs, with the exception of liver. Radioactivity from tissues other than tumor and liver declined with time, following the decline of blood radioactivity. Rapid whole-body elimination of radioactivity was observed (> 96% in 24 h). The thyroid showed little uptake of radioactivity, indicating minimal in vivo deiodination. 1-(2-Fluoro-4-iodo-2,4-dideoxy-beta-L-xylopranosyl)-2-nitroimidazo le appears to undergo hypoxia-dependent binding in tumor tissue at levels comparable to those of other sugar-coupled 2-nitroimidazoles. The potential for imaging with this compound is discussed.     

Seeing sunlit owls in a new light: orienting Snowy Owls may not be displaying

Snowy Owls Bubo scandiacus often face the sun when sitting on the ground or when perched. Such sun‐orienting has been suggested to represent a visual display to conspecifics but other explanations have not been thoroughly examined. We observed the orientation of wintering Snowy Owls to both the sun and the wind, and their perching behaviour during two winters in central Saskatchewan, Canada. We proposed three new explanations for sun orientation in addition to the display hypothesis: thermoregulation, hunting and defence against predators. On sunny days, 44% of 710 Owls faced the sun; this was non‐random because few did so on overcast days. Sun‐ as opposed to wind‐orienting was strongly associated with weather conditions. Logistic regressions indicated that at temperatures below –13 °C and at wind speeds greater than about 18 km/h, Owls tended to orient to the wind rather than to the sun. The likelihood of wind‐orienting increased if the Owl perched above the ground, whereas the likelihood of sun‐orientating increased slightly when the Owl was sitting on the ground. There was no difference between the sexes in orienting behaviour. Snowy Owls seemed to prioritize wind‐orienting for thermoregulation but the results are also consistent with the idea that sun‐orientation can reduce heat loss. Facing into the sun did not support the hunting explanation because the birds would have been blinded and not able to see prey, but was consistent with the protection explanation if it helps to increase vigilance against enemies. Although we cannot completely rule out the display explanation, the spatial context of sunning Owls and a lack of a sex effect makes it unlikely that this is the main function. Instead, Owls seem to trade‐off wind‐ vs. sun‐orienting according to the prevailing weather conditions and do so mainly to thermoregulate and perhaps to maintain vigilance.     

pH oscillations and constant low pH delay the appearance of highly branched (colonial) mutants in chemostat cultures of the quorn(R) myco-protein fungus, Fusarium graminearum A3/5

At pH 5.8, highly branched (colonial) mutants appear in glucose-limited chemostat cultures of Fusarium graminearum A3/5 after ca. 400 h (ca. 107 generations) of growth. The appearance of these mutants was delayed by up to 144 h (45 generations) when the culture was switched at intervals of 120 h between pH 4.8 and 6.6. The concentration of cycloheximide-resistant macroconidia in the culture was used as an indicator of the periodic selection of advantageous mutants and it was found that, in chemostat populations subjected to pH oscillations, the interval (210 +/- 20 h) between peaks was nearly double that observed in chemostat populations cultured at constant pH (124 +/- 12 h at constant pH 5.8 and 120 h +/- 17 h at constant pH 4.5), indicating that the population evolved more slowly under oscillating pH than under constant pH. When grown in mixed culture with the parental strain (A3/5), the selective advantage of two colonial mutants isolated from chemostat cultures grown under conditions of oscillating pH was found to be pH dependent. Compared to cultures grown at constant pH 5.8, a delay of ca. 312 h (87 generations) in the appearance of colonial mutants was observed when F. graminearum A3/5 was grown in glucose-limited chemostat culture at constant pH 4.5. (c) 1996 John Wiley & Sons, Inc.     

Stability of TEM β-lactamase mutants hydrolyzing third generation cephalosporins

The stability properties of six natural mutants of the TEM-1 β-lactamase have been studied. The glutamate to lysine substitution at positions 104 and 240 stabilize the enzyme. Conversely, the G238S mutant's decreased stability might reflect an altered conformation of the active site and thus be related to the modified substrate profile. The relative stability of the R164S and R164H mutants is explained by the formation of a hydrogen bond between these residues and Asp-179 conferring a somewhat different structure to the omega loop and thus also explaining the extended substrate profile of these mutants. The loss of stability of the R164H mutant with increasing pH values can be explained by the titration of a hydrogen bond between the Nδ of His-164 and the Oδ of Asp-179. The properties of the G238S+E104K double mutant which is the most active against third-generation cephalosporins result from a balance of destabilizing and stabilizing substitutions, and their effects seem to be additive. The behavior of the R164S + E240K mutant might be explained on the basis of a similar compensation phenomenon. © 1995 Wiley-Liss, Inc.     

Weak link between dispersal and parasite community differentiation or immunogenetic divergence in two sympatric cichlid fishes

Geographical isolation, habitat variation and trophic specialization have contributed to a large extent to the astonishing diversity of cichlid fishes in the Great East African lakes. Because parasite communities often vary across space and environments, parasites can accompany and potentially enhance cichlid species diversification. However, host dispersal may reduce opportunities for parasite‐driven evolution by homogenizing parasite communities and allele frequencies of immunity genes. To test for the relationships between parasite community variation, host dispersal and parasite‐induced host evolution, we studied two sympatric cichlid species with contrasting dispersal capacities along the shores of southern Lake Tanganyika. Whereas the philopatric Tropheus moorii evolved into several genetically differentiated colour morphs, Simochromis diagramma is phenotypically rather uniform across its distribution range and shows only weak population structure. Populations of both species were infected with divergent parasite communities and harbour differentiated variant pools of an important set of immune genes, the major histocompatibility complex (MHC). The overall extent of geographical variation of parasites and MHC genes was similar between host species. This indicates that immunogenetic divergence among populations of Lake Tanganyika cichlids can occur even in species that are strongly dispersing. However, because this also includes species that are phenotypically uniform, parasite‐induced evolution may not represent a key factor underlying species diversification in this system.     

Characterization of recombinant human factor VIII

Recently, complete human factor VIII DNA clones have been obtained and subsequently expressed in baby hamster kidney cells (Wood, W. I., Capon, D. J., Simonsen, C. C., Eaton, D. L., Gitschier, J., Keyt, B., Seeburg, P. H., Smith, D. H., Hollingshead, P., Wion, K. L., Delwart, E., Tuddenham, E. G. D., Vehar, G. A., and Lawn, R. M. (1984) Nature 312, 330-337). The recombinant factor VIII (rVIII) protein secreted from these cells has now been purified allowing its structural analysis and comparison to plasma-derived factor VIII (pdVIII). Analysis of purified rVIII by sodium dodecyl sulfate-polyacrylamide gel electrophoresis shows that it consists of multiple polypeptides with relative mobilities (Mr) ranging from 80,000-210,000. The same pattern of polypeptides is also observed for pdVIII resolved by sodium dodecyl sulfate-polyacrylamide gel electrophoresis. The proteins associated with rVIII are recognized by pdVIII antibodies in a Western blot. When rVIII and pdVIII are subjected to isoelectric focusing they are resolved into a similar pattern of protein bands. Thrombin, factor Xa, and activated protein C, which modulate factor VIII activity by proteolysis, process rVIII in the same manner they do pdVIII. As is the case for pdVIII, thrombin activation of rVIII coagulant activity correlates with the generation of subunits with Mr of 73,000, 50,000 and 43,000. These subunits appear to form a metal-(perhaps Ca2+) linked complex. EDTA inactivates thrombin-activated rVIII and pdVIII, with the activity being regenerated after the addition of a molar excess of MnCl2. The results suggest that rVIII is structurally and functionally very similar to pdVIII.     

The Effect of Short-Term H2S Fumigation on Nitrate Reductase Activity in Spinach Leaves

Short-term exposure of spinach plants to 250 ppb H₂S at a photonfluence rate of 35µmol m^–2s^–1 (within the400–700 nm range) in the ambient air did not affect invitro nitrate reductase activity (NRA) in the leaves. Likewise,H₂S exposure did not significantly affect in vivo NRA measuredunder anaerobic conditions. In vivo NRA of untreated plantswas apparently inhibited in the presence of oxygen. However,shortterm H₂S exposure increased in vivo "aerobic" NRA up tofive fold of that of untreated plants. H₂S induced increaseof in vivo "aerobic" NRA depended on the sulfide concentration.After 24 hours of exposure maximal increase (two to five fold)of in vivo NRA "aerobic" was observed at 220 ppb H₂S. It isproposed that H₂S inhibited NADH oxidizing enzymes, which resultedin an increase in NADH supply to nitrate reductase (NR) in thepresence of oxygen. It was unlikely that the increase in invivo "aerobic" NRA in sulfide exposed plants was due to an alteredcompetition between mitochondrial respiration and NR since leafrespiration was not affected by an exposure to 250 ppb H₂S (Received February 12, 1986; Accepted June 27, 1986)