Explaining fire‐driven landscape transformation during the Initial Burning Period of New Zealand's prehistory

At the time of Māori settlement, ca. 750 years ago, New Zealand's ecosystems experienced catastrophic change, including the introduction of fire to ignition‐limited ecosystems and the resulting widespread loss of forest. While high‐resolution sediment‐charcoal analyses suggest this forest loss was rapid, Māori populations were small and transient during the Initial Burning Period and there is evidence for widespread fire activity in places where there is little archaeological evidence of human presence. These observations beg the question ‘how did small populations manage to transform large areas so rapidly?’ Using a simulation model, we demonstrate how the relationship between time since fire and flammability in New Zealand's forests drives positive feedbacks that allow for rapid and extensive deforestation. Under ignition scenarios mirroring prehuman conditions, the model did not produce significant deforestation – thus, it is extremely unlikely that deforestation could have occurred without human‐initiated burning. Scenarios where ignition was spatio‐temporally random also failed to result in deforestation. Rapid and widespread forest loss occurred in scenarios incorporating spatio‐temporally savvy selection of ignition locations. Targeting ignitions in flammable vegetation was more important than targeting ignitions in years with favourable climatic conditions. However, targeting in space and time concurrently, such that flammable vegetation was ignited during favourable climatic years was the most efficient strategy of those simulated. Following the Initial Burning Period decadal ignitions would have been sufficient to maintain a deforested shrubland/grassland landscape. New Zealand's Initial Burning Period is one of many that occurred across eastern Polynesia following human settlement, and these events have left long‐term legacy effects that remain evident in contemporary landscapes. Improving understanding of how humans shaped environments in New Zealand in the past has implications for eastern Polynesia as a whole.     

Variation for host range within and among populations of the parasitic plant Striga hermonthica

Striga hermonthica is an angiosperm parasite that causes substantial damage to a wide variety of cereal crop species, and to the livelihoods of subsistence farmers in sub-Saharan Africa. The broad host range of this parasite makes it a fascinating model for the study of host-parasite interactions, and suggests that effective long-term control strategies for the parasite will require an understanding of the potential for host range adaptation in parasite populations. We used a controlled experiment to test the extent to which the success or failure of S. hermonthica parasites to develop on a particular host cultivar (host resistance/compatibility) depends upon the identity of interacting host genotypes and parasite populations. We also tested the hypothesis that there is a genetic component to host range within individual S. hermonthica populations, using three rice cultivars with known, contrasting abilities to resist infection. The developmental success of S. hermonthica parasites growing on different rice-host cultivars (genotypes) depended significantly on a parasite population by host-genotype interaction. Genetic analysis using amplified fragment length polymorphism (AFLP) markers revealed that a small subset of AFLP markers showed 'outlier' genetic differentiation among sub-populations of S. hermonthica attached to different host cultivars. We suggest that, this indicates a genetic component to host range within populations of S. hermonthica, and that a detailed understanding of the genomic loci involved will be crucial in understanding host-parasite specificity and in breeding crop cultivars with broad spectrum resistance to S. hermonthica.     

Comparison of the in vitro and in vivo susceptibilities of Burkholderia mallei to Ceftazidime and Levofloxacin

Background  

Burkholderia mallei is a zoonotic Gram negative bacterium which primarily infects solipeds but can cause lethal disease in humans if left untreated. The effect of two antibiotics with different modes of action on Burkholderia mallei strain ATCC23344 was investigated by using in vitro and in vivo studies.     

Evolutionary inference from QST

Q(ST) is a commonly used metric of the degree of genetic differentiation among populations displayed by quantitative traits. Typically, Q(ST) is compared to F(ST) measured on putatively neutral loci; if Q(ST)=F(ST), this is taken as evidence of spatially heterogeneous and diversifying selection. This paper reviews the uses, assumptions and statistics of Q(ST) and F(ST) comparisons. Unfortunately, Q(ST)/F(ST) comparisons are statistically challenging. For a single trait, Q(ST) must be compared not to the mean F(ST) but to the distribution of F(ST) values. The sources of biases and sampling error for Q(ST) are reviewed, and a new method for comparing Q(ST) and F(ST) is suggested. Simulation results suggest that the distribution of neutral F(ST) and Q(ST) values are little affected by various deviations from the island model. Consequently, the distributions of Q(ST) and F(ST) are well approximated by the Lewontin-Krakauer prediction, even with realistic deviations from the island-model assumptions.     

Regional and local controls on postglacial vegetation and fire in the Siskiyou Mountains, northern California, USA

The Siskiyou Mountains of northwestern California and southwestern Oregon are a floristic hotspot, and the high diversity of conifers there likely results from a combination of geological, ecological, climatological and historical factors. To evaluate how past climate variability has influenced the composition, structure and fire regime of the Siskiyou forests, pollen, charcoal, and lithological evidence was examined from two lakes along a moisture gradient to reconstruct the vegetation, fire and climate history. The late-glacial period was characterized by subalpine parkland and infrequent fire at both sites. During the late-glacial/Early Holocene transition period, subalpine parkland was replaced by a closed forest of Pinus, Cupressaceae, Abies and Pseudotsuga and more frequent fires a 1000 years earlier at the wetter site, and it is likely that reduced Pacific Ocean upwelling created warmer drier conditions at the coast. In the Early Holocene, Pinus, Cupressaceae were less abundant and fire less frequent at the coastal site during a period of increased coastal upwelling and fog production. In the Late Holocene, Abies, Pseudotsuga, Pinus, and Quercus vaccinifolia increased in the forest at both sites suggesting a widespread response to cooling. Fewer fires at the wetter site may account for the abundance of Picea breweriana within the last 1000 years. The comparison of the two records implies that large-scale controls in climate during the last 14,000 cal yr BP have resulted in major changes in vegetation and fire regime. Asynchrony in the ecosystem response of wetter and drier sites arises from small-scale spatial variations in effective moisture and temperature resulting from topographically-influenced microclimates and coastal-to-inland climate gradients.     

Perspective: Evolution and detection of genetic robustness

Abstract Robustness is the invariance of phenotypes in the face of perturbation. The robustness of phenotypes appears at various levels of biological organization, including gene expression, protein folding, metabolic flux, physiological homeostasis, development, and even organismal fitness. The mechanisms underlying robustness are diverse, ranging from thermodynamic stability at the RNA and protein level to behavior at the organismal level. Phenotypes can be robust either against heritable perturbations (e.g., mutations) or nonheritable perturbations (e.g., the weather). Here we primarily focus on the first kind of robustness–genetic robustness–and survey three growing avenues of research: (1) measuring genetic robustness in nature and in the laboratory; (2) understanding the evolution of genetic robustness; and (3) exploring the implications of genetic robustness for future evolution.     

The changes in genetic and environmental variance with inbreeding in Drosophila melanogaster

We performed a large-scale experiment on the effects of inbreeding and population bottlenecks on the additive genetic and environmental variance for morphological traits in Drosophila melanogaster. Fifty-two inbred lines were created from the progeny of single pairs, and 90 parent-offspring families on average were measured in each of these lines for six wing size and shape traits, as well as 1945 families from the outbred population from which the lines were derived. The amount of additive genetic variance has been observed to increase after such population bottlenecks in other studies; in contrast here the mean change in additive genetic variance was in very good agreement with classical additive theory, decreasing proportionally to the inbreeding coefficient of the lines. The residual, probably environmental, variance increased on average after inbreeding. Both components of variance were highly variable among inbred lines, with increases and decreases recorded for both. The variance among lines in the residual variance provides some evidence for a genetic basis of developmental stability. Changes in the phenotypic variance of these traits are largely due to changes in the genetic variance.     

Research Tools to Investigate Movements,Migrations, and Life History of Sturgeons (Acipenseridae), with an Emphasis on Marine-Oriented Populations

Worldwide, sturgeons (Acipenseridae) are among the most endangered fishes due to habitat degradation, overfishing, and inherent life history characteristics (long life span, late maturation, and infrequent spawning). As most sturgeons are anadromous, a considerable portion of their life history occurs in estuarine and marine environments where they may encounter unique threats (e.g., interception in non-target fisheries). Of the 16 marine-oriented species, 12 are designated as Critically Endangered by the IUCN, and these include species commercially harvested. We review important research tools and techniques (tagging, electronic tagging, genetics, microchemistry, observatory) and discuss the comparative utility of these techniques to investigate movements, migrations, and life-history characteristics of sturgeons. Examples are provided regarding what the applications have revealed regarding movement and migration and how this information can be used for conservation and management. Through studies that include Gulf (Acipenser oxyrinchus desotoi) and Green Sturgeon (A. medirostris), we illustrate what is known about well-studied species and then explore lesser-studied species. A more complete picture of migration is available for North American sturgeon species, while European and Asian species, which are among the most endangered sturgeons, are less understood. We put forth recommendations that encourage the support of stewardship initiatives to build awareness and provide key information for population assessment and monitoring.     

Electroejaculation and semen analysis in a male lowland gorilla,Gorilla gorilla gorilla

Two electroejaculations and a testicular biopsy were performed on a lowland gorilla,Gorilla gorilla gorilla, to determine fertility. Sperm morphology showed 92.5% abnormal sperm which were of primary, or testicular, origin. Testicular biopsy revealed abnormally shaped nuclei in the later stages of spermiogenesis, supporting the semen analysis performed from the electroejaculations. The majority of abnormalities consisted of pyriform heads (23%) and abnormal acrosomes (35%).