Evolution by individuals,plant-herbivore interactions,and mosaics of genetic variability: The adaptive significance of somatic mutations in plants

Summary Differences in the pattern of organization of organisms may lead to different patterns of evolution, genetics and ecology, Plants and animals differ in their fundamental patterns of organization. Plants consist of a series of repeating units that compete with one another, while animals consist of mutually interdependent systems that cannot compete. As a result, plants may be able to take advantage of somatic mutations in ways that are not available to animals. Somatic mutations arising in plants can be inherited by naturally occurring mechanisms of sexual and asexual reproduction. Long life span, large clone size, and the complete regeneration of buds each year may permit an indivdual plant or clone to evolve. Plants may even develop as mosaics of genetic variation. Evolution by individual plants and/or development as mosaics of genetic variation may prevent herbivores from breaking the defenses of their host plants. This evolution may also result in greater fine tuning to local environments leading to ecotypic variation.     

Location of a new encephalitogenic epitope (residues 43 to 64) in proteolipid protein that induces relapsing experimental autoimmune encephalomyelitis in PL/J and (SJL x PL)F1 mice.

Synthetic peptides of proteolipid protein (PLP) were screened for their ability to induce experimental autoimmune encephalomyelitis (EAE) in SJL/J, PL/J, and (SJL x PL)F1 mice, and T cell lines were selected by stimulation of lymph node cells with PLP peptides. PLP 141-151 was found to be less encephalitogenic in SJL/J mice than PLP 139-151, due to deletion of two amino acids from the amino-terminal end. PLP 139-151 immunization induced relapsing EAE in SJL/J and F1 mice but not PL/J mice. In contrast, PLP 43-64 induced relapsing EAE in PL/J and F1 mice but not SJL/J mice. F1 T cell lines specific for either PLP 43-64 or PLP 139-151 adoptively transferred demyelinating EAE to naive F1 recipients. Haplotypes H-2s and H-2u appear to be immunologically co-dominant in F1 mice in the PLP EAE system, which differs from the H-2u dominance in F1 mice in the myelin basic protein EAE system. The identification of a PLP peptide that is encephalitogenic in PL/J mice, in addition to the previous demonstration of PLP peptides that are encephalitogenic for SWR mice (PLP 103-116) and SJL/J mice (PLP 139-151), lends support to a role for PLP as a target Ag in autoimmune demyelinating diseases.     

Impact of pocket gopher disturbance on plant species diversity in a shortgrass prairie community

Summary We examined the impact of pocket gopher disturbances on the dynamics of a shortgrass prairie community. Through their burrowing activity, pocket gophers (Thomomys bottae) cast up mounds of soil which both kill existing vegetation and create sites for colonization by competitively-inferior plant species. Three major patterns emerge from these disturbances: First, we show that 10 of the most common herbaceous perennial dicots benefit from pocket gopher disturbance; that is, a greater proportion of seedlings are found in the open space created by pocket gopher disturbance than would be expected based on the availability of disturbed habitat. Additionally, these seedlings exhibited higher growth rates than adjacent seedlings of the same species growing in undisturbed habitat. Second, we tested two predictions of the Intermediate Disturbance Hypothesis and found that species diversity was greatest for plots characterized by disturbances of intermediate age. However, we did not detect significant differences in diversity between plots characterized by intermediate and high levels of disturbance, indicating that many species are adapted to or at least tolerant of high levels of disturbance. Third, we noted that the abundance of grasses decreased with increasing disturbance, while the abundance of dicots increased with increasing disturbance.     

Rapid shifts in the chemical composition of aspen forests: an introduced herbivore as an agent of natural selection

The global ecological impacts of introduced and exotic species can be dramatic, leading to losses in biodiversity and ecosystem “meltdown”, however, the evolutionary impacts of introduced species are much less understood. Further, very few studies have examined whether mammalian herbivores can act as agents of natural selection for plant traits. We examined the hypothesis that variation in aspen phytochemistry resulted in selective herbivory by Cervus elaphus (elk), an introduced mammalian herbivore. With the experimental removal of a large elk exclosure, elk selectively eliminated 60% of an aspen population previously protected from herbivory resulting in a dramatic shift in the phytochemical composition of the aspen forest. Selection gradients (β) varied from 0.52 to 0.66, well above average relative to other studies of selection. These results indicate that introduced herbivores can have rapid evolutionary consequences even on long lived native species. Because there are fundamental links between phytochemistry, biodiversity and ecosystem processes, the effects of an introduced herbivore are likely to have cascading impacts on the services ecosystems provide.     

Soil-mediated local adaptation alters seedling survival and performance

Background and aims

Soils can act as agents of natural selection, causing differential fitness among genotypes and/or families of the same plant species, especially when soils have extreme physical or chemical properties. More subtle changes in soils, such as variation in microbial communities, may also act as agents of selection. We hypothesized that variation in soil properties within a single river drainage can be a selective gradient, driving local adaptation in plants.

Methods

Using seeds collected from individual genotypes of Populus angustifolia James and soils collected from underneath the same trees, we use a reciprocal transplant design to test whether seedlings would be locally adapted to their parental soil type.

Results

We found three patterns: 1. Soils from beneath individual genotypes varied in pH, soil texture, nutrient content, microbial biomass and the physiological status of microorganisms. 2. Seedlings grown in local soils experienced 2.5-fold greater survival than seedlings planted in non-local soils. 3. Using a composite of height, number of leaves and leaf area to measure plant growth, seedlings grew ～17.5% larger in their local soil than in non-local soil.

Conclusions

These data support the hypothesis that variation in soils across subtle gradients can act as an important selective agent, causing differential fitness and local adaptation in plants.     

The relative influences of host plant genotype and yearly abiotic variability in determining herbivore abundance

Both plant genotype and yearly abiotic variation affect herbivore population sizes, but long-term data have rarely been used to contrast the relative contributions of each. Using a hierarchical Bayesian model, we directly compare effects of these two factors on the population size of a common herbivore, Aceria parapopuli, on Populus angustifolia × fremontii F₁ hybrid trees growing in a common garden across 8 years. Several patterns emerged. First, the Bayesian posterior estimates of tree genotype effects on mite gall number ranged from 0.0043 to 229 on a linear scale. Second, year effect sizes across 8 years of study ranged from 0.133 to 1.895. Third, in comparing the magnitudes of genotypic versus yearly variation, we found that genotypic variation was over 130 times greater than variation among years. Fourth, precipitation in the previous year negatively affected gall abundances, but was minimal compared to tree genotype effects. These findings demonstrate the relative importance of tree genotypic variation in determining herbivore population size. However, given the demonstrated sensitivity of cottonwoods to drought, the loss of individual tree genotypes from an altered climate would have catastrophic impacts on mites that are dependent upon these genotypes for their survival.     

A genetic similarity rule determines arthropod community structure

We define a genetic similarity rule that predicts how genetic variation in a dominant plant affects the structure of an arthropod community. This rule applies to hybridizing cottonwood species where plant genetic variation determines plant-animal interactions and structures a dependent community of leaf-modifying arthropods. Because the associated arthropod community is expected to respond to important plant traits, we also tested whether plant chemical composition is one potential intermediate link between plant genes and arthropod community composition. Two lines of evidence support our genetic similarity rule. First, in a common garden experiment we found that trees with similar genetic compositions had similar chemical compositions and similar arthropod compositions. Second, in a wild population, we found a similar relationship between genetic similarity in cottonwoods and the dependent arthropod community. Field data demonstrate that the relationship between genes and arthropods was also significant when the hybrids were analysed alone, i.e. the pattern is not dependent upon the inclusion of both parental species. Because plant-animal interactions and natural hybridization are common to diverse plant taxa, we suggest that a genetic similarity rule is potentially applicable, and may be extended, to other systems and ecological processes. For example, plants with similar genetic compositions may exhibit similar litter decomposition rates. A corollary to this genetic similarity rule predicts that in systems with low plant genetic variability, the environment will be a stronger factor structuring the dependent community. Our findings argue that the genetic composition of a dominant plant can structure higher order ecological processes, thus placing community and ecosystem ecology within a genetic and evolutionary framework. A genetic similarity rule also has important conservation implications because the loss of genetic diversity in one species, especially dominant or keystone species that define many communities, may cascade to negatively affect the rest of the dependent community.     

Transcriptional response to alcohol exposure in Drosophila melanogaster

Background  

Alcoholism presents widespread social and human health problems. Alcohol sensitivity, the development of tolerance to alcohol and susceptibility to addiction vary in the population. Genetic factors that predispose to alcoholism remain largely unknown due to extensive genetic and environmental variation in human populations. Drosophila, however, allows studies on genetically identical individuals in controlled environments. Although addiction to alcohol has not been demonstrated in Drosophila, flies show responses to alcohol exposure that resemble human intoxication, including hyperactivity, loss of postural control, sedation, and exposure-dependent development of tolerance.     

Bacterial swimming strategies and turbulence

Most bacteria in the ocean can be motile. Chemotaxis allows bacteria to detect nutrient gradients, and hence motility is believed to serve as a method of approaching sources of food. This picture is well established in a stagnant environment. In the ocean a shear microenvironment is associated with turbulence. This shear flow prevents clustering of bacteria around local nutrient sources if they swim in the commonly assumed "run-and-tumble" strategy. Recent observations, however, indicate a "back-and-forth" swimming behavior for marine bacteria. In a theoretical study we compare the two bacterial swimming strategies in a realistic ocean environment. The "back-and-forth" strategy is found to enable the bacteria to stay close to a nutrient source even under high shear. Furthermore, rotational diffusion driven by thermal noise can significantly enhance the efficiency of this strategy. The superiority of the "back-and-forth" strategy suggests that bacterial motility has a control function rather than an approach function under turbulent conditions.