我国东北土壤有机碳、无机碳含量与土壤理化性质的相关性

根据黑龙江、吉林、辽宁省和内蒙古地区相关历史资料数据,分析了我国东北表层土壤(0-50 cm)土壤相关理化性质与有机碳、无机碳的相关性,得到如下结论:土壤全氮、碱解氮、全磷、速效磷、速效钾、K⁺离子交换量、Fe₂O₃、P₂O₅、总孔隙度均与土壤有机碳含量呈显著正相关(R²=0.10-0.94, n=38-345, P<0.0001),但与土壤无机碳含量则大多呈显著负相关(R²=0.11-0.30, n=37-122, P<0.01);与此相反,土壤pH值、容重与土壤有机碳呈负相关(R²=0.36-0.42,n=41-304, P<0.0001),而与无机碳呈显著正相关(R²=0.29-0.31,n=39-125, P <0.01)。表层土壤有机碳、无机碳与土壤理化性质呈相反变化趋势的结果说明,由于土壤利用方式变化所导致的土壤理化性质改变对土壤无机碳和有机碳可能具有相反影响。在研究土壤碳平衡过程中,应该充分考虑这种关系所导致的相互补偿作用,即有机碳的增加,可能意味着无机碳的减少,或者反之。目前研究中普遍忽略无机碳的变化,可能导致生态系统碳收支计算显著偏差,所获得的经验拟合方程有利于对我国东北地区土壤碳平衡研究产生的这种偏差进行粗略估计。     

我国北方植被指数对土壤湿度的敏感性分析

土壤湿度对植被指数起着重要的作用。利用NOAA-AVHRR数据中的植被指数(NDVI)和我国气象台站所监测的土壤湿度数据,对我国北方地区的NDVI与土壤湿度的关系进行了研究。结果表明,近18年来,北方地区土壤湿度不同区域其变化趋势存在差异,西北地区土壤湿度在增加,而华北和东北地区土壤湿度在下降。NDVI对土壤湿度的响应也存在着明显的区域差异,我国西北地区植被对土壤湿度的敏感性最强,其次是华北地区,敏感性弱的是东北地区;对于不同层次的土壤湿度,也表现为同样的区域特点。但随着土壤深度的增加,敏感性减弱。这种敏感性也表现在不同季节变化上,春季华北地区土壤湿度对植被指数影响较大,其次是西北和东北地区,夏季和秋季北方地区土壤湿度与植被指数都有较好的相关性,以西北地区的相关系数最大,而冬季北方地区植被指数对土壤湿度都不敏感。     

BIPAD: A web server for modeling bipartite sequence elements

Background  

Many dimeric protein complexes bind cooperatively to families of bipartite nucleic acid sequence elements, which consist of pairs of conserved half-site sequences separated by intervening distances that vary among individual sites.     

以Fe(Ⅲ)改性胶原纤维为载体固定过氧化氢酶

将胶原纤维用三价铁改性后作为载体,通过戊二醛的交联作用将过氧化氢酶固定在该载体上.制备的固定化过氧化氢酶蛋白固载量为16.7 mg/g,酶活收率为35％.研究了固定化酶与自由酶的最适pH、最适温度、热稳定性、贮存稳定性及操作稳定性.结果表明:过氧化氢酶经此法固定化后,最适pH及最适温度与自由酶相同,分别为pH 7.0和25℃;但固定化酶的热稳定性显著提高,在75℃保存5 h后,仍能保留30％的活力,而自由酶则完全失活;固定化酶在室温下保存12 d后,酶活力仍保持在88％以上,而自由酶在此条件下则完全失活;此外,固定化过氧化氢酶还表现出了良好的操作稳定性,在室温下连续反应26次后,相对活力为57％.该研究表明胶原纤维可作为固定化过氧化     

Tau pathogenesis is promoted by Aβ1-42 but not Aβ1-40

Background

The relationship between the pathogenic amyloid β-peptide species Aβ1–42 and tau pathology has been well studied and suggests that Aβ1–42 can accelerate tau pathology in vitro and in vivo. The manners if any in which Aβ1–40 interacts with tau remains poorly understood. In order to answer this question, we used cell-based system, transgenic fly and transgenic mice as models to study the interaction between Aβ1–42 and Aβ1–40.

Results

In our established cellular model, live cell imaging (using confocal microscopy) combined with biochemical data showed that exposure to Aβ1–42 induced cleavage, phosphorylation and aggregation of wild-type/full length tau while exposure to Aβ1–40 didn’t. Functional studies with Aβ1–40 were carried out in tau-GFP transgenic flies and showed that Aβ1–42, as previously reported, disrupted cytoskeletal structure while Aβ1–40 had no effect at same dose. To further explore how Aβ1–40 affects tau pathology in vivo, P301S mice (tau transgenic mice) were injected intracerebrally with either Aβ1–42 or Aβ1–40. We found that treatment with Aβ1–42 induced tau phosphorylation, cleavage and aggregation of tau in P301S mice. By contrast, Aβ1–40 injection didn’t alter total tau, phospho-tau (recognized by PHF-1) or cleavage of tau, but interestingly, phosphorylation at Ser²⁶² was shown to be significantly decreased after direct inject of Aβ1–40 into the entorhinal cortex of P301S mice.

Conclusions

These results demonstrate that Aβ1–40 plays different role in tau pathogenesis compared to Aβ1–42. Aβ1–40 may have a protective role in tau pathogenesis by reducing phosphorylation at Ser²⁶², which has been shown to be neurotoxic.

     

Cyk3, a novel SH3-domain protein, affects cytokinesis in yeast

Cytokinesis requires the wholesale reorganization of the cytoskeleton and secretion to complete the division of one cell into two. In the budding yeast Saccharomyces cerevisiae, the IQGAP-related protein Iqg1 (Cyk1) promotes cytokinetic actin ring formation and is required for cytokinesis and viability [1-3]. As the actin ring is not essential for cytokinesis or viability, Iqg1 must act by another mechanism [4]. To uncover this mechanism, a screen for high-copy suppressors of the iqg1 lethal phenotype was performed. CYK3 suppressed the requirement for IQG1 in viability and cytokinesis without restoration of the actin ring, demonstrating that CYK3 promotes cytokinesis through an actomyosin-ring-independent pathway. CYK3 encodes a novel SH3-domain protein that was found in association with the actin ring and the mother-bud neck. cyk3 null cells had misshapen mother-bud necks and were deficient in cytokinesis. In the cyk3 null strain, actin rearrangements associated with cytokinesis appeared normal, suggesting that the phenotype reflects a defect in secretory targeting or septal synthesis. Deletion of either cyk3 or hof1 alone results in a mild cytokinetic phenotype [5-7], but deletion of both genes resulted in lethality and a complete cytokinetic block, suggesting overlapping function. Thus, Cyk3 appears to be important for cytokinesis and acts potentially downstream of Iqg1.     

Optimal Cooperation-Trap Strategies for the Iterated Rock-Paper-Scissors Game

In an iterated non-cooperative game, if all the players act to maximize their individual accumulated payoff, the system as a whole usually converges to a Nash equilibrium that poorly benefits any player. Here we show that such an undesirable destiny is avoidable in an iterated Rock-Paper-Scissors (RPS) game involving two rational players, X and Y. Player X has the option of proactively adopting a cooperation-trap strategy, which enforces complete cooperation from the rational player Y and leads to a highly beneficial and maximally fair situation to both players. That maximal degree of cooperation is achievable in such a competitive system with cyclic dominance of actions may stimulate further theoretical and empirical studies on how to resolve conflicts and enhance cooperation in human societies.     

围封与放牧管理对高寒草甸植物功能性状和功能多样性的影响

植物功能性状能够响应生存环境的变化并直接决定着生态系统功能。为了揭示围封与放牧管理对物种共存和驱动群落构建的影响机理,该研究以青藏高原东缘高寒草甸为对象,分析了围封与放牧处理对植物功能性状和功能多样性的影响。结果显示:(1)在群落水平,放牧显著降低了比叶面积和植物高度;在物种水平,放牧群落中多数杂类草比叶面积减小,而莎草类和禾草类的比叶面积在处理间无显著差异。(2)叶干物质含量与比叶面积在围封和放牧处理中均呈显著负相关关系,在放牧处理中,叶干物质含量与植物高度呈显著的二次函数关系,即随着叶干物质含量的增大,植物高度先减小后增大;在同等比叶面积的情况下,与围封相比,放牧降低了叶干物质含量;在相同叶干物质含量的情况下,与围封相比,放牧降低了植物高度。(3)放牧在总体上降低了种间性状的平均差异,植物性状表现出趋同响应,具体表现为放牧减小了叶干物质含量和植物高度的种间差异;与围封相比,放牧显著提高了功能均匀度,减小了功能分离度。研究表明,不同植物种对放牧的响应模式存在差异,放牧降低了种间对光资源的竞争,可能增加了对土壤养分的竞争,放牧驱动群落构建的过程中,土壤养分是非常重要的作用因子,说明放牧影响物种共存依赖于对多种资源的竞争。     

Fibroblast Activation Protein Overexpression and Clinical Implications in Solid Tumors: A Meta-Analysis

Objective

Fibroblast activation protein (FAP) plays a vital role in tumor invasion and metastasis. Previous studies have reported its prognostic value in different tumors. However, the results of these reports remain controversial. In this study, a meta-analysis was performed to clarify this issue.

Methods

A search of the PubMed, Embase and CNKI databases was conducted to analyze relevant articles. The outcomes included the relations between FAP expression and histological differentiation, tumor invasion, lymph node metastasis, distant metastasis and overall survival (OS). Sensitivity analysis by FAP expression in different cells and tumor types were further subjected to sensitivity analyses as subgroups. Pooled odds ratios (ORs) and hazard ratios (HRs) were evaluated using the random-effects model.

Results

The global analysis included 15 studies concerning various solid tumors. For global analysis, FAP overexpression in tumor tissue displayed significant associations with poor OS and tumor progression (OS: HR = 2.18, P = 0.004; tumor invasion: OR = 4.48, P = 0.007; and lymph node metastasis: OR = 3.80, P = 0.004). The subgroup analyses yielded two notable results. First, the relation between FAP overexpression and poor OS and tumor lymph node metastasis was closer in the patients with FAP expression in tumor cells. Second, the pooled analyses of colorectal cancers or pancreatic cancers all indicated that FAP overexpression was associated with a detrimental OS (HR: 1.72, P = 0.009; HR: 3.18, P = 0.005, respectively). The magnitude of this effect was not statistically significant compared with that in patients with non-colorectal cancers or non-pancreatic cancers. These analyses did not display a statistically significant correlation between FAP expression and histological differentiation and distant metastasis in all of the groups.

Conclusions

FAP expression is associated with worse prognosis in solid tumors, and this association is particularly pronounced if FAP overexpression is found in the tumor cells rather than the stroma.     

Isoform-selective inhibition of chrysin towards human cytochrome P450 1A2. Kinetics analysis,molecular docking,and molecular dynamics simulations

Our kinetics studies demonstrated that the nature product chrysin exhibited a high inhibitory affinity of 54 nM towards human cytochrome P450 1A2 and was comparable to α-naphthoflavone (49 nM), whereas it represented a moderate affinity of 5225 nM against human cytochrome P450 2C9. However, it remains unclear how this inhibitor selectively binds 1A2. To better understand the isoform selectivity of chrysin, molecular docking and molecular dynamics simulations were performed. Chrysin formed a strong H-bond with Asp313 of 1A2. The stacking interactions with Phe226 also contributed to its tight binding to 1A2. The larger and much more open active site architectures of 2C9 may explain the weaker inhibitory affinity of chrysin towards 2C9. The predicted binding free energies suggest that chrysin preferred 1A2 (ΔG_{bind, pred} = ?23.11 kcal/mol) to 2C9 (?20.41 kcal/mol). Additionally, the present work revealed that 7-hydroxy-flavone bound to 1A2 in a similar pattern as chrysin and represented a slightly less negative predicted binding free energy, which was further validated by our kinetics analysis (IC₅₀ = 240 nM). Results of the study can provide insight for designing novel isoform-selective 1A2 inhibitors.