Principles of protein folding--a perspective from simple exact models.

General principles of protein structure, stability, and folding kinetics have recently been explored in computer simulations of simple exact lattice models. These models represent protein chains at a rudimentary level, but they involve few parameters, approximations, or implicit biases, and they allow complete explorations of conformational and sequence spaces. Such simulations have resulted in testable predictions that are sometimes unanticipated: The folding code is mainly binary and delocalized throughout the amino acid sequence. The secondary and tertiary structures of a protein are specified mainly by the sequence of polar and nonpolar monomers. More specific interactions may refine the structure, rather than dominate the folding code. Simple exact models can account for the properties that characterize protein folding: two-state cooperativity, secondary and tertiary structures, and multistage folding kinetics--fast hydrophobic collapse followed by slower annealing. These studies suggest the possibility of creating "foldable" chain molecules other than proteins. The encoding of a unique compact chain conformation may not require amino acids; it may require only the ability to synthesize specific monomer sequences in which at least one monomer type is solvent-averse.     

Functional Genomics Approach to Identifying Genes Required for Biofilm Development by Streptococcus mutans

Streptococcus mutans, the primary etiological agent of human dental caries, is an obligate biofilm-forming bacterium. The goals of this study were to identify the gene(s) required for biofilm formation by this organism and to elucidate the role(s) that some of the known global regulators of gene expression play in controlling biofilm formation. In S. mutans UA159, the brpA gene (for biofilm regulatory protein) was found to encode a novel protein of 406 amino acid residues. A strain carrying an insertionally inactivated copy of brpA formed longer chains than did the parental strain, aggregated in liquid culture, and was unable to form biofilms as shown by an in vitro biofilm assay. A putative homologue of the enzyme responsible for synthesis of autoinducer II (AI-2) of the bacterial quorum-sensing system was also identified in S. mutans UA159, but insertional inactivation of the gene (luxS_Sm) did not alter colony or cell morphology or diminish the capacity of S. mutans to form biofilms. We also examined the role of the homologue of the Bacillus subtilis catabolite control protein CcpA in S. mutans in biofilm formation, and the results showed that loss of CcpA resulted in about a 60% decrease in the ability to form biofilms on an abiotic surface. From these data, we conclude that CcpA and BrpA may regulate genes that are required for stable biofilm formation by S. mutans.     

木里柠檬种子油的脂肪酸组成和果实主要营养成分的研究

本文报道,采用气相色谱(GC)分析新发现的野生木里柠檬,和栽培的尤力克柠檬种子油的8种脂肪酸成分,和用常规化学方法对比测定两种柠檬果实中的糖,有机酸和维生素C的含量。研究结果表明,木里柠檬的脂肪酸及其它营养成分与尤力克柠檬相近。     

AP2功能基因在植物花发育中的重要作用

AP2基因作为调控植物花发育的功能基因,参与花分生特性建立、花器官的特性特化以及形成调控。所编码的AP2/EREBP转录因子的主要特征是都至少含有一个由60到70个左右的氨基酸组成高度保守的DNA结合区,称作AP2结合域。按其所含的AP2结构域的数目分为3个亚族,即AP2亚家族、EREBP亚家族和RAV亚家族,每个亚家族都有各自的作用。AP2基因不但自身调控着花、胚珠的发育,而且与其他因子相互协作,参与到复杂的花发育调控网络。将对AP2基因的特征和分类及其在花发育中的作用进行概述。     

The thymic stromal cell line MTSC4 induced thymocyte apoptosis in a non-MHC-restricted manner

Mouse thymic stromal cell line 4 (MTSC4) is one of the stromal cell lines established in our laboratory. While losing the characteristics of epithelial cells, they express some surface markers shared with thymic dendritic cells (TDCs). To further study the biological functions of these cells, we compared the capability of MTSC4 with TDCs in the induction of thymocyte apoptosis, using thymic reaggregation culture system. Apoptosis of thymocytes induced by MTSC4 and TDCs was measured by Annexin V and PI staining and analyzed by flow cytometry. We found that MTSC4 selectively augmented the apoptosis of CD4^ 8^ (DP) thymocytes. This effect was Fas/FasL independent and could not be blocked by antibodies to MHC class I and class II molecules. In addition, MTSC4 enhanced the apoptosis of DP thymocytes from different strains of mice, which implies that MTSC4-induced thymocyte apoptosis is not mediated by the TCR recognition of self peptide/MHC molecules. In contrast to MTSC4, thymocyte apoptosis induced by TDCs was MHC-restricted. Thus, MHC-independent fashion of stromal-DP thymocyte interaction may be one of the ways to induce thymocyte apoptosis in thymus. Our study has also shown that the interaction of MTSC4 stromal cells and thymocytes is required for the induction of thymocyte apoptosis.     

Long non‐coding RNA highly up‐regulated in liver cancer promotes epithelial‐to‐mesenchymal transition process in oral squamous cell carcinoma

Oral squamous cell carcinoma (OSCC) is an oral and maxillofacial malignancy that exhibits high incidence worldwide. In diverse human cancers, the long non‐coding RNA (lncRNA) highly up‐regulated in liver cancer (HULC) is aberrantly expressed, but how HULC affects OSCC development and progression has remained mostly unknown. We report that HULC was abnormally up‐regulated in oral cancer tissues and OSCC cell lines, and that suppression of HULC expression in OSCC cells not only inhibited the proliferation, drug tolerance, migration and invasion of the cancer cells, but also increased their apoptosis rate. Notably, in a mouse xenograft model, HULC depletion reduced tumorigenicity and inhibited the epithelial‐to‐mesenchymal transition process. Collectively, our findings reveal a crucial role of the lncRNA HULC in regulating oral cancer carcinogenesis and tumour progression, and thus suggest that HULC could serve as a novel therapeutic target for OSCC.     

Antitumor mechanism of Se-containing polysaccharide, a novel organic selenium compound

Recent studies on the inhibition of tumor growth by Se-containing polysaccharide were reviewed. Meanwhile, the possible molecular mechanisms of the inhibition of tumor cell growth through antioxidation, induction of tumor cell apoptosis, blockade of cell cycle, and enhancement of immunity by Se-containing polysaccharide were proposed. In the end, the potential application of Se-containing polysaccharide in the prevention and treatment of tumor was elucidated.     

鹿衔草化学成分的研究：羟基肾叶鹿蹄草甙的结构鉴定

从鹿衔草（Ｐｙｒｏｌａ ｃａｌｌｉａｎｔｈａ Ｈ．Ａｎｄｒｅｓ）分离得到两个化合物。经光谱分析,确定其中１个化合物为新化合物,命名为羟基肾叶鹿蹄草甙（１, ｈｙｄｒｏｘｙｌｒｅｎｉｆｏｌｉｎ）,另一化合物为儿茶素（３）。     

库布齐沙漠东部不同生物结皮发育阶段土壤温室气体通量

以流动沙地为对照,采用时空替代法分析库布齐沙漠东部固定沙地上不同发育阶段生物结皮藻类结皮和地衣结皮土壤温室气体通量特征及其与环境因子之间的关系,研究生物结皮发育对荒漠土壤温室气体通量的影响.结果表明: 荒漠土壤CO₂排放通量大小为地衣结皮(128.5 mg·m^-2·h^-1)>藻结皮(70.2 mg·m^-2·h^-1)>流动沙地(48.2 mg·m^-2·h^-1),CH₄吸收通量大小为地衣结皮(30.4 μg·m^-2·h^-1)>藻结皮(21.2 μg·m^-2·h^-1)>流动沙地(18.2 μg·m^-2·h^-1),N₂O排放通量大小为地衣结皮(6.6 μg·m^-2·h^-1)>藻结皮(5.4 μg·m^-2·h^-1)>流动沙地(2.5 μg·m^-2·h^-1).CO₂排放具有明显的季节变化,生长季显著大于非生长季;CH₄和N₂O季节变化差异不显著,前者生长季吸收大于非生长季,后者非生长季排放大于生长季.土壤有机碳和全氮含量、土壤微生物数量均是影响温室气体通量的重要因素,环境水热因子是影响土壤CO₂排放的关键因子,但CH₄和N₂O通量对水热因子的变化不敏感.随着植被恢复和生物结皮发育,荒漠土壤温室气体累积通量的不断增大导致其百年尺度的全球增温潜势亦显著提高,依次为地衣结皮(1135.7 g CO₂-e·m^-2·a^-1)>藻结皮(626.5 g CO₂-e·m^-2·a^-1) >流动沙地(422.7 g CO₂-e·m^-2·a^-1).     

SC-CO2和乙酸乙酯萃取芸香中活性成分的比较分析

为了探讨超临界二氧化碳(supercritical carbon dioxide, SC-CO2)技术与提取物的分级分离在萃取芸香活性成分的应用价值,本研究采用SC-CO2和乙酸乙酯萃取芸香中植物蜡和活性成分,并调查粒径和CO2流量对提取产量的影响。在250 bar、40℃条件下提取,并使第一个分离器冷却到-10℃,可获得较好的提取效率。当粒径较小时,提取过程更快,即内部传质控制该过程。分级分离可选择性去除表皮植物蜡,约占由SC-CO2处理产生的总提取物的77.5%W/W。第二分离器中的获得的提取物中活性化合物可达86.3%W/W。随后采用气相色谱-质谱联用仪(gas chromatography-mass spectrometry, GC-MS)分析表明,乙酸乙酯提取物低于SC-CO2提取物的萃取效率,主要是由于提取物中含有大量的植物蜡。本研究为超临界二氧化碳技术在萃取芸香活性成分方面的提供技术参考。