Pooled CRISPR/Cas9 reveals redundant roles of plastidial phosphoglycerate kinases in carbon fixation and metabolism

Phosphoglycerate kinase (PGK) is a highly conserved reversible enzyme that participates in both glycolysis and photosynthesis. In Arabidopsis thaliana, one cytosolic PGK (PGKc) and two plastidial PGKs (PGKp) are known. It remains debatable whether the two PGKp isozymes are functionally redundant or specialized in plastidial carbon metabolism and fixation. Here, using a pooled clustered regularly interspaced short palindromic repeats (CRISPR)/CRISPR‐associated protein 9 (Cas9) strategy, we found that plants with single mutations in pgkp1 or pgkp2 were not significantly affected, whereas a pgkp1pgkp2 double mutation was lethal due to retarded carbon fixation, suggesting that PGKp isozymes play redundant functional roles. Metabolomic analysis demonstrated that the sugar‐deficient pgkp1pgkp2 double mutation was partially complemented by exogenous sugar, although respiration intermediates were not rescued. Chloroplast development was defective in pgkp1pgkp2, due to a deficiency in glycolysis‐dependent galactoglycerolipid biosynthesis. Ectopic expression of a plastid targeting PGKc did not reverse the pgkp1pgkp2 double‐mutant phenotypes. Therefore, PGKp1 and PGKp2 play redundant roles in carbon fixation and metabolism, whereas the molecular function of PGKc is more divergent. Our study demonstrated the functional conservation and divergence of glycolytic enzymes.     

Protein Paucimannosylation Is an Enriched N‐Glycosylation Signature of Human Cancers

While aberrant protein glycosylation is a recognized characteristic of human cancers, advances in glycoanalytics continue to discover new associations between glycoproteins and tumorigenesis. This glycomics‐centric study investigates a possible link between protein paucimannosylation, an under‐studied class of human N‐glycosylation [Man_1‐3GlcNAc₂Fuc_0‐1], and cancer. The paucimannosidic glycans (PMGs) of 34 cancer cell lines and 133 tissue samples spanning 11 cancer types and matching non‐cancerous specimens are profiled from 467 published and unpublished PGC‐LC‐MS/MS N‐glycome datasets collected over a decade. PMGs, particularly Man_2‐3GlcNAc₂Fuc₁, are prominent features of 29 cancer cell lines, but the PMG level varies dramatically across and within the cancer types (1.0–50.2%). Analyses of paired (tumor/non‐tumor) and stage‐stratified tissues demonstrate that PMGs are significantly enriched in tumor tissues from several cancer types including liver cancer (p = 0.0033) and colorectal cancer (p = 0.0017) and is elevated as a result of prostate cancer and chronic lymphocytic leukaemia progression (p < 0.05). Surface expression of paucimannosidic epitopes is demonstrated on human glioblastoma cells using immunofluorescence while biosynthetic involvement of N‐acetyl‐β‐hexosaminidase is indicated by quantitative proteomics. This intriguing association between protein paucimannosylation and human cancers warrants further exploration to detail the biosynthesis, cellular location(s), protein carriers, and functions of paucimannosylation in tumorigenesis and metastasis.     

不同降水年型下长期施肥旱地小麦产量效应

以黄土高原30年长期肥料定位试验为基础,依据降水将生育年划分为干旱年、平水年和丰水年,研究不同施肥方式对黄土高原冬小麦产量、肥料贡献率和降水利用率的影响.结果表明: 小麦连续种植30年中,氮磷配施和氮磷钾配施下小麦产量、肥料贡献率和降水利用率显著高于不施肥和单施肥处理,氮磷钾配施下小麦产量、肥料贡献率和降水利用率分别达到3480 kg·hm^-2、61.45 kg·kg^-1、6.13 kg·mm^-1·hm^-2;不同降水年型下,丰水年小麦产量、肥料贡献率和降水利用率相对较高;使用逐步回归分析可知,不同降水年型下小麦产量主要受氮磷肥施用量、休闲期降水和越冬期降水影响.黄土旱塬可以通过提高氮磷用量同时适当施用钾肥,以及在休闲期做好蓄水保墒工作来提高小麦产量.     

不同土壤生境下斑茅对重金属的富集特征

为了筛选Cu、Zn、Pb、Cd多重金属离子的富集植物,对不同土壤生境(铜铁矿、钨矿、铅锌矿和无矿场污染)的优势种斑茅(Saccharum arundinaceum(Retz.)Jeswiet)对Cu、Zn、Pb、Cd离子富集情况进行了调查。结果表明,斑茅对Cu、Zn、Pb、Cd离子有富集优势并以Cu富集显著,斑茅根系土壤与斑茅地上部Cu含量存在相关性(P<0.05),斑茅对Pb和Cd的富集与转运存在极显相关性(P<0.01);在强酸、多金属污染弃耕农田土壤中,斑茅不仅符合Cu超富集植物的特征,而且其对Zn、Pb和Cd3种重金属的富集系数和转运系数均>1。在Cd、Cu、Pb和Zn均低于国家土壤环境质量二级标准(GB15618-1995)的弃耕农田中,斑茅对Cu、Zn和Cd的富集系数均>1。研究表明,斑茅可以作为Cu、Zn、Pb、Cd多金属污染土壤的富集植物进行人工修复。     

Daily Rhythms of P‐glycoprotein Expression in Mice

Recent studies have shown the gene expression of several transporters to be circadian rhythmic. However, it remains to be elucidated whether the expression of P‐glycoprotein, which is involved in the transport of many medications, undergoes 24 h rhythmicity. To address this issue, we investigated daily profiles of P‐glycoprotein mRNA and protein levels in peripheral mouse tissues. In the liver and intestine, but not in the kidney, Abcb1a mRNA expression showed clear 24 h rhythmicity. On the other hand, Abcb1b and Abcb4, the other P‐glycoprotein genes, did not exhibit significant rhythmic expression in the studied tissues. In the intestine, levels of whole P‐glycoprotein also exhibited a daily rhythm, with a peak occurring in the latter half of the light phase and a trough at the onset of the light phase. Consistent with the day‐night change of P‐glycoprotein level, the ex vivo accumulation of digoxin, an Abcb1a P‐glycoprotein substrate, into the intestinal segments at the onset of dark phase was significantly lower than it was at the onset of the light phase. Thus, Abcb1a P‐glycoprotein expression, and apparently its function, are 24 h rhythmic at least in mouse intestine tissue. This circadian variation might be involved in various chronopharmacological phenomena.     

杉木人工林水量平衡和蒸散的研究

 本文根据我们严密设计的小集水区径流场连续6年的水文测定数据,进行了杉木人工林水量平衡和蒸散的研究。结果表明：集水区年平均降雨量1065.5mm, 在林冠作用面降雨量的分配中,林冠截留雨量264.6mm,截留率24.8%;穿透过林冠层的雨量799.82mm,树干径流量1.08mm,分别占降雨量的75.1%和0.1%。林内降水到达林地时,在枯枝落叶层这个作用面上净降水进行再分配,其中,地表径流量9.27mm,地下径流量203.00mm,总径流系数0.199。土壤蓄水量月变化较大,但年变化很小,占降雨量的1.2%。系统水量最大的输出是蒸散,每年以气态形式返回大气的水量866.03mm,占降雨量81.3%。在蒸散的水量中,林冠截留雨量的直接物理蒸发量为264.6mm,占总蒸散量的31.6%。     

The genome of Syntrophorhabdus aromaticivorans strain UI provides new insights for syntrophic aromatic compound metabolism and electron flow

How aromatic compounds are degraded in various anaerobic ecosystems (e.g. groundwater, sediments, soils and wastewater) is currently poorly understood. Under methanogenic conditions (i.e. groundwater and wastewater treatment), syntrophic metabolizers are known to play an important role. This study explored the draft genome of Syntrophorhabdus aromaticivorans strain UI and identified the first syntrophic phenol‐degrading phenylphosphate synthase (PpsAB) and phenylphosphate carboxylase (PpcABCD) and syntrophic terephthalate‐degrading decarboxylase complexes. The strain UI genome also encodes benzoate degradation through hydration of the dienoyl‐coenzyme A intermediate as observed in Geobacter metallireducens and Syntrophus aciditrophicus. Strain UI possesses electron transfer flavoproteins, hydrogenases and formate dehydrogenases essential for syntrophic metabolism. However, the biochemical mechanisms for electron transport between these H₂/formate‐generating proteins and syntrophic substrate degradation remain unknown for many syntrophic metabolizers, including strain UI. Analysis of the strain UI genome revealed that heterodisulfide reductases (HdrABC), which are poorly understood electron transfer genes, may contribute to syntrophic H₂ and formate generation. The genome analysis further identified a putative ion‐translocating ferredoxin : NADH oxidoreductase (IfoAB) that may interact with HdrABC and dissimilatory sulfite reductase gamma subunit (DsrC) to perform novel electron transfer mechanisms associated with syntrophic metabolism.     

一株龙葵内生细菌SDE06去除Cd2+的实验

植物内生菌广泛存在于各种植物中, 对宿主的生命活动产生了各种影响。本研究通过对重金属镉(Cd)超累积植物龙葵(Solanum nigrum L.)内生菌优势种进行分离纯化, 并用含Cd2+培养基初步筛选, 得到7株有抗性的菌株, 分别命名为SDE01-07,其中SDE06在Cd2+浓度为80 mg/L的条件下仍能生长。经鉴定此株菌属芽孢杆菌属(Bacillus sp.)。对SDE06在不同条件下去除Cd2+的情况进行研究, 结果表明：正交实验得最佳实验条件为培养时间36 h, pH 6.0, 温度37°C