Limited effects of early snowmelt on plants,decomposers, and soil nutrients in Arctic tundra soils

In addition to warming temperatures, Arctic ecosystems are responding to climate change with earlier snowmelt and soil thaw. Earlier snowmelt has been examined infrequently in field experiments, and we lack a comprehensive look at belowground responses of the soil biogeochemical system that includes plant roots, decomposers, and soil nutrients. We experimentally advanced the timing of snowmelt in factorial combination with an open‐top chamber warming treatment over a 3‐year period and evaluated the responses of decomposers and nutrient cycling processes. We tested two alternative hypotheses: (a) Early snowmelt and warming advance the timing of root growth and nutrient uptake, altering the timing of microbial and invertebrate activity and key nutrient cycling events; and (b) loss of insulating snow cover damages plants, leading to reductions in root growth and altered biological activity. During the 3 years of our study (2010–2012), we advanced snowmelt by 4, 15, and 10 days, respectively. Despite advancing aboveground plant phenology, particularly in the year with the warmest early‐season temperatures (2012), belowground effects were primarily seen only on the first sampling date of the season or restricted to particular years or soil type. Overall, consistent and substantial responses to early snowmelt were not observed, counter to both of our hypotheses. The data on soil physical conditions, as well interannual comparisons of our results, suggest that this limited response was because of the earlier date of snowmelt that did not coincide with substantially warmer air and soil temperatures as they might in response to a natural climate event. We conclude that the interaction of snowmelt timing with soil temperatures is important to how the ecosystem will respond, but that 1‐ to 2‐week changes in timing of snowmelt alone are not enough to drive season‐long changes in soil microbial and nutrient cycling processes.     

Structural studies of the O-antigenic polysaccharides from the enteroaggregative Escherichia coli strain 94/D4 and the international type strain Escherichia coli O82

The structure of the O-antigen polysaccharides (PS) from the enteroaggregative Escherichia coli strain 94/D4 and the international type strain E. coli O82 have been determined. Component analysis and ¹H, ¹³C, and ³¹P NMR spectroscopy experiments were employed to elucidate the structure. Inter-residue correlations were determined by ¹H, ¹³C-heteronuclear multiple-bond correlation, and ¹H, ¹H-NOESY experiments. d-GroA as a substituent is linked via its O-2 in a phosphodiester-linkage to O-6 of the α-d-Glcp residue. The PS is composed of tetrasaccharide repeating units with the following structure:→4)-α-d-Glcp6-(P-2-d-GroA)-(1→4)-β-d-Galp-(1→4)-β-d-Glcp-(1→3)-β-d-GlcpNAc-(1→Cross-peaks of low intensity from an α-d-Glcp residue were present in the NMR spectra and spectral analysis indicates that they originate from the terminal residue of the polysaccharide. Consequently, the biological repeating unit has a 3-substituted N-acetyl-d-glucosamine residue at its reducing end. Enzyme immunoassay using specific anti-E. coli O82 rabbit sera showed identical reactivity to the LPS of the two strains, in agreement with the structural analysis of their O-antigen polysaccharides.     

O‐Glycosylated 24 kDa human growth hormone has a mucin‐like biantennary disialylated tetrasaccharide attached at Thr‐60

MS was used to characterize the 24 kDa human growth hormone (hGH) glycoprotein isoform and determine the locus of O‐linked oligosaccharide attachment, the oligosaccharide branching topology, and the monosaccharide sequence. MALDI‐TOF/MS and ESI‐MS/MS analyses of glycosylated 24 kDa hGH tryptic peptides showed that this hGH isoform is a product of the hGH normal gene. Analysis of the glycoprotein hydrolysate by high‐performance anion‐exchange chromatography with pulsed amperometric detection and HPLC with fluorescent detection for N‐acetyl neuraminic acid (NeuAc) yielded the oligosaccharide composition (NeuAc₂, N‐acetyl galactosamine₁, Gal₁). After β‐elimination to release the oligosaccharide from glycosylated 24 kDa hGH, collision‐induced dissociation of tryptic glycopeptide T6 indicated that there had been an O‐linked oligosaccharide attached to Thr‐60. The sequence and branching structure of the oligosaccharide were determined by ESI‐MS/MS analysis of tryptic glycopeptide T6. The mucin‐like O‐oligosaccharide sequence linked to Thr‐60 begins with N‐acetyl galactosamine and branches in a bifurcated topology with one appendage consisting of galactose followed by NeuAc and the other consisting of a single NeuAc. The oligosaccharide moiety lies in the high‐affinity binding site 1 structural epitope of hGH that interfaces with both the growth hormone and the prolactin receptors and is predicted to sterically affect receptor interactions and alter the biological actions of hGH.     

What is “functional impairment”? Disentangling disability from clinical significance

The formulation of disability (or “functional impairment”) is currently not operationalized in either the ICD or the DSM. In the DSM system, making a diagnosis depends on a conjoint assessment of symptoms and functioning, whereas the ICD keeps the disability construct separate from the diagnosis of mental disorders. We need an internationally agreed conceptualization between ICD and DSM in terms of better operationalization of disease and disability components. No functioning or disability should appear as part of the threshold of the diagnosis in either system.     

Histone-H1-dependent chromatin superstructures and the suppression of gene activity

I have identified a chromatin particle containing DNA as large as 20-40 kb that migrates as a discrete entity on agarose gels. With increasing nuclease digestion, the particle becomes cleaved in the linker regions between nucleosomes, but remains intact, probably held together by the outer histones, H1 and H5. By hybridization analysis, inactive genes are found in these particles. Active genes (and their flanking sequences) are also found in particles containing H1 and H5, but in contrast to inactive supranucleosome particles, active polynucleosome particles are not held together after cleavage of linker DNA. This suggests that H1 cross-links adjacent nucleosomes in inactive regions and that H1 is bound differently in expressed regions. The results raise the possibility that the marked degree of suppression of repressed, tissue-specific genes may be determined, in part, by their assembly into these inactive supranucleosome structures.     

Molecular heterogeneity of platelet-activating factor produced by stimulated human polymorphonuclear leukocytes

The molecular heterogeneity of platelet-activating factor (PAF) produced by stimulated human neutrophilic polymorphonuclear leukocytes (PMN) was assessed by both normal and reverse phase high performance liquid chromatography (HPLC). As detected by rabbit platelet stimulation, at least 5 PAF molecules were separated by HPLC. Fast atom bombardment (FAB) mass spectrometry revealed one of these PAFs was acetyl glyceryl ether phosphorylcholine (AGEPC) with a C_16:0 alkyl chain in the $\text{sn}$-1 position. Although the structures of the remaining PAFs are unknown, two of the peaks of PAF activity had the same retention times on reverse phase HPLC as the C₁₅- and C₁₈-saturated alkyl chain AGEPC homologues. These studies indicate that the human PMN produces multiple molecular species of PAF.     

A novel approach to structure proof of glyceryl ether-containing glycerophospholipids. Base-catalyzed methanolysis of platelet-activating factor (AGEPC) at 60 degrees C

A novel reaction was explored in which synthetic platelet-activating factor, 1-O-alkyl-2-acetyl-sn-glycero-3-phosphocholine (AGEPC), upon treatment with 1 N NaOH in methanol at 60 degrees C for 20 min, sequentially released the acetyl group, then the choline moiety with concomitant formation of the monomethyl ester of 1-O-alkyl-glycero-phosphoric acid. A mechanism is proposed in which a transient cyclic phosphate intermediate is formed and then attacked by a CH3O moiety to yield a mixture of the sn-2 and sn-3 methyl esters. Proof of structure of the monomethyl ester derivative was achieved through the use of thin-layer chromatography, aluminum oxide chromatography, and examination of the trimethylsilyl derivative of the monomethyl ester by gas-liquid chromatography-mass spectrometry. Replacement of the acyl group on the 2 position with an ethyl or methyl residue completely prevented any attack by 1 N NaOH in methanol at 60 degrees C. Sphingomyelin was not attacked and only acetate removal was noted with 1-O-alkyl-2-acetyl-sn-glycero-3-phosphoethanolamine under similar conditions. The significance of these findings as they relate to the influence of substituents on the chemical and biological reactivity of AGEPC is discussed.     

The application of scanning electron microscopy to the systematics of the neotropical Peripatidae (Onychophora)

The taxonomy of the New World Peripatidae is poorly known both because of their rarity and difficulty in the determination of specimens. The distribution of papillae on the dorsal integument is an important taxonomic; character but is difficult to interpret under the light microscope. In this study the integument of a range of New World onychophoran species was studied using scanning electron microscopy. Twenty-one species were examined. Three species of Peripatopsidae were also studied for comparison. This technique revealed (a) the pattern of distribution of papillae on the integument, and (b) the morphology of the papillae. A pattern of three smaller papillae between two large was common to many species. Differences observed in some species were probably modifications of this basic pattern. There was interspecific variation in the number of scales in the apical and basal pieces of the papillae. The specimens examined fell into two main groups: (1) species with more than three scale ranks in the apical piece ( Oroperipatus and Peripatus ) and (2) species with three or fewer scale ranks ( Epiperipatus, Macroperipatus and others). The results thus support a distinction between Epiperipatus and Peripatus . However Macroperipatus is shown not to be a natural group. The relationships of some species which did not fit into this pattern are discussed. This paper shows scanning electron microscopy to be a potentially useful technique in a revision of the New World Peripatidae.