Root Carbon Dioxide Fixation by Phosphorus-Deficient Lupinus albus (Contribution to Organic Acid Exudation by Proteoid Roots)

When white lupin (Lupinus albus L.) is subjected to P deficiency lateral root development is altered and densely clustered, tertiary lateral roots (proteoid roots) are initiated. These proteoid roots exude large amounts of citrate, which increases P solubilization. In the current study plants were grown with either 1 mM P (+P-treated) or without P (-P-treated). Shoots or roots of intact plants from both P treatments were labeled independently with 14CO2 to compare the relative contribution of C fixed in each with the C exuded from roots as citrate and other organic acids. About 25-fold more acid-stable 14C, primarily in citrate and malate, was recovered in exudates from the roots of -P-treated plants compared with +P-treated plants. The rate of in vivo C fixation in roots was about 4-fold higher in -P-treated plants than in +P-treated plants. Evidence from labeling intact shoots or roots indicates that synthesis of citrate exuded by -P-treated roots is directly related to nonphotosynthetic C fixation in roots. C fixed in roots of -P-treated plants contributed about 25 and 34% of the C exuded as citrate and malate, respectively. Nonphotosynthetic C fixation in white lupin roots is an integral component in the exudation of large amounts of citrate and malate, thus increasing the P available to the plant.     

No tree an island: the plant–caterpillar food web of a secondary rain forest in New Guinea

We characterized a plant–caterpillar food web from secondary vegetation in a New Guinean rain forest that included 63 plant species (87.5% of the total basal area), 546 Lepidoptera species and 1679 trophic links between them. The strongest 14 associations involved 50% of all individual caterpillars while some links were extremely rare. A caterpillar randomly picked from the vegetation will, with ≥ 50% probability, (1) feed on one to three host plants (of the 63 studied), (2) feed on < 20% of local plant biomass and (3) have ≥ 90% of population concentrated on a single host plant species. Generalist species were quantitatively unimportant. Caterpillar assemblages on locally monotypic plant genera were distinct, while sympatric congeneric hosts shared many caterpillar species. The partitioning of the plant–caterpillar food web thus depends on the composition of the vegetation. In secondary forest the predominant plant genera were locally monotypic and supported locally isolated caterpillar assemblages.     

60 million years of co-divergence in the fig-wasp symbiosis

Figs (Ficus; ca 750 species) and fig wasps (Agaoninae) are obligate mutualists: all figs are pollinated by agaonines that feed exclusively on figs. This extraordinary symbiosis is the most extreme example of specialization in a plant-pollinator interaction and has fuelled much speculation about co-divergence. The hypothesis that pollinator specialization led to the parallel diversification of fig and pollinator lineages (co-divergence) has so far not been tested due to the lack of robust and comprehensive phylogenetic hypotheses for both partners. We produced and combined the most comprehensive molecular phylogenetic trees to date with fossil data to generate independent age estimates for fig and pollinator lineages, using both non-parametric rate smoothing and penalized likelihood dating methods. Molecular dating of ten pairs of interacting lineages provides an unparalleled example of plant-insect co-divergence over a geological time frame spanning at least 60 million years.     

Inter-specific aggression generates ant mosaics in canopies of primary tropical rainforest

The ant mosaic is a concept of the non-random spatial distribution of individual ant species in trees built upon the assumption of interspecific behavioural associations. However, colony identity and environmental variance may also play a role in species distribution. Here we assess the presence of ant mosaics in a primary forest ecosystem and whether they are structured by species' aggressive behaviours or by habitat filtering. We sampled arboreal ants from vertically stratified baits exposed in 225 canopy trees in a 9-ha plot of primary lowland forest in Papua New Guinea, the largest forest area surveyed to detect ant mosaics. We performed behavioural tests on conspecific ants from adjacent trees to determine the territories of individual colonies. We explored the environmental effects on the ant communities using information on the plot vegetation structure and topography. Furthermore, we created a novel statistical method to test for the community non-random spatial structure across the plot via spatial randomisation of individual colony territories. Finally, we linked spatial segregation among the four most common species to experimentally assessed rates of interspecies aggression. The ant communities comprised 57 species of highly variable abundance and vertical stratification. Ant community composition was spatially dependent, but it was not affected by tree species composition or canopy connectivity. Only local elevation had a significant but rather small effect. Individual colony territories ranged from one tree to 0.7 ha. Species were significantly over-dispersed, with their territory overlap significantly reduced. The level of aggression between pairs of the four most common species was positively correlated with their spatial segregation. Our study demonstrates the presence of ant mosaics in tropical pristine forest, which are maintained by interspecific aggression rather than habitat filtering, with vegetation structure having a rather small and indirect effect, probably linked to microclimate variability.     

Sequencing and analysis of an Irish human genome

Background

Recent studies generating complete human sequences from Asian, African and European subgroups have revealed population-specific variation and disease susceptibility loci. Here, choosing a DNA sample from a population of interest due to its relative geographical isolation and genetic impact on further populations, we extend the above studies through the generation of 11-fold coverage of the first Irish human genome sequence.

Results

Using sequence data from a branch of the European ancestral tree as yet unsequenced, we identify variants that may be specific to this population. Through comparisons with HapMap and previous genetic association studies, we identified novel disease-associated variants, including a novel nonsense variant putatively associated with inflammatory bowel disease. We describe a novel method for improving SNP calling accuracy at low genome coverage using haplotype information. This analysis has implications for future re-sequencing studies and validates the imputation of Irish haplotypes using data from the current Human Genome Diversity Cell Line Panel (HGDP-CEPH). Finally, we identify gene duplication events as constituting significant targets of recent positive selection in the human lineage.

Conclusions

Our findings show that there remains utility in generating whole genome sequences to illustrate both general principles and reveal specific instances of human biology. With increasing access to low cost sequencing we would predict that even armed with the resources of a small research group a number of similar initiatives geared towards answering specific biological questions will emerge.     

Reproductive strategies and barriers to hybridization between Tellima GRANDIFLORA and Tolmeia MENZIESII (Saxifragaceae)

We examined the reproductive biology of Tolmeia menziesii and Tellima grandiflora (Saxifragaceae) and barriers to hybridization between these species. Crossing experiments and pollinator observations suggest that Tolmeia is completely self-incompatible, obligately outcrossing, and bumble bee pollinated, whereas Tellima is self-compatible, with a mixed mating system possibly facilitated by rove beetles. Hybrid crosses set seed only when Tellima was the pollen recipient. Observations of pollen-style interactions indicate that self-incompatibility in Tolmeia is late-acting and that pollen tube growth is comparable between reciprocal hybrid pollinations. Seven of 40 progeny from Tolmeia × Tellima crosses were isozymically and morphologically intermediate between Tolmeia and Tellima, and were identical to a naturally occurring hybrid. The remainder were identical to Tellima, the maternal parent in successful hybrid crosses, which we attribute to either intraspecific pollen contamination, or agamospermy. Barriers to hybridization between sympatric Tellima and Tolmeia consist of divergence in floral morphology, pollinator relationships, compatibility, and a series of postzygotic isolating mechanisms including hybrid sterility.     

Why are there more arboreal ant species in primary than in secondary tropical forests?

1.?Species diversity of arboreal arthropods tends to increase during rainforest succession so that primary forest communities comprise more species than those from secondary vegetation, but it is not well understood why. Primary forests differ from secondary forests in a wide array of factors whose relative impacts on arthropod diversity have not yet been quantified. 2.?We assessed the effects of succession-related determinants on a keystone ecological group, arboreal ants, by conducting a complete census of 1332 ant nests from all trees with diameter at breast height?≥?5?cm occurring within two (unreplicated) 0·32-ha plots, one in primary and one in secondary lowland forest in New Guinea. Specifically, we used a novel rarefaction-based approach to match number, size distribution and taxonomic structure of trees in primary forest communities to those in secondary forest and compared the resulting numbers of ant species. 3.?In total, we recorded 80 nesting ant species from 389 trees in primary forest but only 42 species from 295 trees in secondary forest. The two habitats did not differ in the mean number of ant species per tree or in the relationship between ant diversity and tree size. However, the between-tree similarity of ant communities was higher in secondary forest than in primary forest, as was the between-tree nest site similarity, suggesting that secondary trees were more uniform in providing nesting microhabitats. 4.?Using our rarefaction method, the difference in ant species richness between two forest types was partitioned according to the effects of higher tree density (22·6%), larger tree size (15·5%) and higher taxonomic diversity of trees (14·3%) in primary than in secondary forest. The remaining difference (47·6%) was because of higher beta diversity of ant communities between primary forest trees. In contrast, difference in nest density was explained solely by difference in tree density. 5.?Our study shows that reduction in plant taxonomic diversity in secondary forests is not the main driver of the reduction in canopy ant species richness. We suggest that the majority of arboreal species losses in secondary tropical forests are attributable to simpler vegetation structure, combined with lower turnover of nesting microhabitats between trees.     

Reproductive traits of the freshwater oyster Etheria elliptica (Bivalvia: Etheriidae) in the Pendjari River,Benin: implications for conservation

The African freshwater oyster Etheria elliptica, which is of great economic importance throughout the continent, is facing overharvesting in many fisheries in West Africa. Its reproductive traits (sex ratio, size at sexual maturity, oocyte diameter and fecundity) were studied at four stations located along the Pendjari River, northern Benin, in April 2013. Histological techniques were implemented to identify sex and gonad development stages. Oocyte sizes were measured based on the histological images and mean oocyte diameter was 38 µm. Fecundity, estimated by counting the developing eggs, averaged 106 724 eggs and increased significantly with shell size. The average sex ratio was approximately 1:1. Hermaphrodites were rare. Males reached sexual maturity at 57.6 mm dorsoventral height, earlier than females at 64.7 mm. The majority of the oyster specimens were in ripe-spawning stages, indicating that reproductive activities partly took place towards the end of the dry season. Both mature and immature individuals were subjected to harvesting at all the investigated fishing sites. The mean size of exploited oysters was 60.6 mm, lower than the size of females at maturity. Management strategies must enforce the minimum size of 65 mm required for harvesting, particularly in open access sites where juveniles are mostly harvested.     

Phenology of Ficus variegata in a seasonal wet tropical forest at Cape Tribulation, Australia

Abstract. We studied the phenology of 198 mature trees of the dioecious fig Ficus variegata Blume (Moraceae) in a seasonally wet tropical rain forest at Cape Tribulation, Australia, from March 1988 to February 1993. Leaf production was highly seasonal and correlated with rainfall. Trees were annually deciduous, with a pronounced leaf drop and a pulse of new growth during the August-September drought. At the population level, figs were produced continually throughout the study but there were pronounced annual cycles in fig abundance. Figs were least abundant during the early dry period (June-September) and most abundant from the late dry season (October-November) through the wet season (December-April). The annual peak in reproduction actually reflected two staggered peaks arising from gender differences in fig phenology. In this dioecious species, female and male trees initiated their maximal fig crops at different times and flowering was to some extent synchronized within sexes. Fig production in the female (seed-producing) trees was typically confined to the wet season. Male (wasp-producing) trees were less synchronized than female trees but reached a peak level of fig production in the months prior to the onset of female fig production. Male trees were also more likely to produce figs continually. Asynchrony among male fig crops during the dry season could maintain the pollinator population under adverse conditions through within- and among-tree wasp transfers.