基于最大熵模型的不同尺度物种分布概率优化热点分析: 以红色木莲为例

单一空间尺度构建的最大熵(maximum entropy, MaxEnt)模型是否具有代表性, 是MaxEnt模型应用与发展中面临的重要问题。本研究基于有效的地理分布位点数据, 利用最小凸多边形法(the minimum convex polygon method)在三江并流、云南省及全国3个空间尺度下分别识别了红色木莲(Manglietia insignis)的建模区域, 并进一步建立MaxEnt模型: 使用ROC曲线分析法与遗漏率(omission rate, OR)检验评估MaxEnt模型预测精度; 基于ArcGIS分析分布概率及其热点区域的分布趋势, 并通过分区统计工具Zonal识别潜在适宜分布区域的质心位置; 采用刀切法检验环境因子贡献率。结果表明: (1)不同尺度下红色木莲的MaxEnt模型都有良好的预测效果, 三江并流、云南省及全国尺度下的AUC值分别为0.936、0.887和0.930, OR值分别为0.18、0.15和0.20; (2)各尺度红色木莲的适生区格局呈现一致性分布趋势, 集中在独龙江、怒江和澜沧江3个流域; (3) 3个空间尺度下红色木莲的地理分布受不同环境因子影响, 存在着尺度依赖效应。由此可见, 红色木莲在不同空间尺度下的预测模型有着稳定的性能表现与良好的预测效果。此外, 我们建议在野外实地调查与野生生物资源保护中加强对普通物种的关注, 在预测物种地理分布的研究中将MaxEnt模型与热点分析结合使用。     

Mithramycin A Alleviates Cognitive Deficits and Reduces Neuropathology in a Transgenic Mouse Model of Alzheimer’s Disease

Increasing evidence has shown that specificity protein 1 (Sp1) is abnormally increased in the brains of subjects with Alzheimer’s disease (AD) and transgenic AD models. However, whether the Sp1 activation plays a critical role in the AD pathogenesis and selective inhibition of Sp1 activation may have a disease-modifying effect on the AD-like phenotypes remain elusive. In this study, we reported that Sp1 mRNA and protein expression were markedly increased in the brain of APPswe/PS1dE9 transgenic mice, whereas chronic administration of mithramycin A (MTM), a selective Sp1 inhibitor, potently inhibited Sp1 activation in the APPswe/PS1dE9 mice down to the levels of wild-type mice. Specifically, we found that MTM treatment resulted in a significant improvement of learning and memory deficits, a dramatic reduction in cerebral Aβ levels and plaque burden, a profound reduction in tau hyperphosphorylation, and a marked increase in synaptic marker in the APPswe/PS1dE9 mice. In addition, MTM treatment was powerfully effective in inhibiting amyloid precursor protein (APP) processing via suppressing APP, beta-site APP cleaving enzyme 1 (BACE1), and presenilin-1 (PS1) mRNA and protein expression to preclude Aβ production in the APPswe/PS1dE9 mice. Furthermore, MTM treatment strongly inhibited phosphorylated CDK5 and GSK3β signal pathways to reduce tau hyperphosphorylation in the APPswe/PS1dE9 mice. Collectively, our findings provide evidence that Sp1 activation may contribute to the AD pathogenesis and may serve as a novel therapeutic target in the treatment of AD. The present study highlights that selective Sp1 inhibitors may be considered as disease-modifying therapeutic agents for AD.     

GTPase Activity of MxB Contributes to Its Nuclear Location,Interaction with Nucleoporins and Anti-HIV-1 Activity

The human myxovirus resistance 2(Mx2/Mx B) protein, a member of interferon(IFN)-inducible dynamin-like large GTPases, restricts a number of virus infections. Inhibition of these viruses occurs at poorly-defined steps after viral entry and has a common requirement for Mx B oligomerization. However, the GTPase activity is essential for the anti-viral effects of Mx B against herpesviruses and HBV but not HIV-1. To understand the role of Mx B GTPase activity, including GTP binding and GTP hydrolysis, in restriction of HIV-1 infection, we genetically separated these two functions and evaluated their contributions to restriction. We found that both the GTP binding and hydrolysis function of Mx B involved in the restriction of HIV-1 replication. The GTPase activity of Mx B contributed to its nuclear location, interaction with nucleoporins(NUPs) and HIV-1 capsids. Furthermore, Mx B disrupted the association between NUPs and HIV-1 cores dependently upon its GTPase activity. The function of GTPase activity was therefore multi-faceted, led to fundamentally distinct mechanisms employed by wild-type Mx B and GTPase activity defective Mx B mutations to restrict HIV-1 replication.     

新疆奇台荒漠植物群落的数量分类及土壤环境解释

为阐明古尔班通古特沙漠南缘荒漠植物群落的分类及与土壤因子的相关关系, 作者于2005年6–7月在新疆奇台县采用机械布设样线和样线上随机布设样地的方法进行了野外调查。共设置48块20 m×10 m的样方, 每个样方中又梅花状设置5个1 m×1 m的草本样方进行植被调查。植被调查结束后, 选择群落外貌上差异显著的样地进行土壤取样(取土深度分别为0 cm、10 cm、30 cm、50 cm、80 cm), 共获得20个样方的土壤样本。以植物重要值作为衡量植物组成相似性的指标, 应用逐步聚类的方法将调查区域植被划分为4种类型: 芦苇(Phragmites australis)+芨芨草(Achnatherum splendens)群落, 梭梭(Haloxylon ammodendron)–枇杷柴(Reaumuria songarica)+西伯利亚白刺群落(Nitraria sibirica), 梭梭–心叶驼绒藜(Ceratoides ewersmanniana)–白茎绢蒿(Seriphidium terrae-albae)群落和心叶驼绒藜–骆驼刺(Alhagi sparsifolia)群落。不同群落类型土壤因子的主成分分析的结果表明: 提取3个主分量能够解释85.65％的群落间土壤因子差异, 第1主分量与土壤平均pH值和深层土壤pH值相关, 第2主分量与平均有机质含量和土壤浅层有机质含量相关, 而第3主分量与平均土壤含盐量和土壤浅层含盐量相关。     

大肠癌相关抗原LEA的血清学诊断

为了探讨抗人大肠癌相关抗原LEA在大肠癌患者的血清学中诊断价值。本文采用双抗夹心ELISA方法,并应用抗人大肠癌单克隆ND-1对大肠癌患者和正常人的血清进行了LEA抗原水平的检测,以及与CEA抗原水平检测的对比研究。结果表明:LEA在大肠癌患者血清学诊断的阳性率为68.7％,正常人为3.1％,CEA分别为56.6％和6.25％,在大肠癌的早期诊断中Dukes(A B)期LEA的阳性率为66.7％,明显高于CEA的36.1％,两者相比有显著统计学意义(P<0.05)。本研究还发现,大肠癌患者血清中LEA水平的表达与肿瘤的Dukes分期无关,而与肿瘤的分化程度密切相关,在高、中、低分化的大肠癌患者的血清中LEA的阳性表达率分别为86.8％、78.6％和11.8％,CEA则分别为71.1％、60.7％和17.6％。LEA在早期癌的阳性率为66.7％、晚期癌为70.2％,CEA分别为36.1％和72.3％。由此可见LEA在对人大肠癌患者血清学诊断的灵敏度和特异性均比CEA高,LEA对于高、中分化大肠癌患者的早期诊断,早期治疗和提高大肠癌患者的生存率方面将具有很重要的意义,是临床上具有应用价值的新型肿瘤标志物。     

Frequency Analysis and Anti-Shock Mechanism of Woodpecker＇s Head Structure

The mechanical properties of the skull and the anti-shock characteristics of woodpecker＇s head were investigated by ex- periment and numerical simulation. We measured the micro-Young＇s modulus of the skull by nano-indentation method and calculated the macro-equivalent Young＇s modulus of the skull at different positions using homogenization theory. Based on the Computerized Tomography （CT） images of woodpecker head, we then built complete and symmetric finite element models of woodpecker＇s skull and its internal structure and performed modal analysis and stress spectrum analysis. The numerical results show that the application of pre-tension force to the hyoid bone can increase the natural frequency of woodpecker＇s head. The first natural frequency under the pre-tension force of 25 N reaches 57 Hz, which is increased by 21.3% from the non-pre-tension state and is more than twice the working frequency of woodpecker （20 Hz 25 Hz）. On the application of impact force to the tip of beak for 0.6 ms, high magnitudes of stress component occur at around 100 Hz and 8,000 Hz, far away from both the working frequencies and the natural frequencies of woodpecker head. The large gaps among the natural, working and stress response frequencies enable the woodpecker to effectively protect its brain from the resonance injury.     

嗜热四膜虫可变剪接基因鉴定及功能分析

可变剪接是产生蛋白质组多样性和调节基因表达的重要机制,相关研究在高等真核生物中开展较多,而在单细胞真核生物中则较少,尤其是单细胞原生动物纤毛虫中,仅有少量报道。本文基于单细胞模式原生动物嗜热四膜虫种大量转录组数据,对其可变剪接基因进行了鉴定及分析。在嗜热四膜虫中共鉴定到2 894个可变剪接位点,涉及到2 698个可变剪接基因,可分为四类。考虑到转录本拼接的准确性,选择了其中464个与基因组预测模型完全一致的可变剪接基因进行深入分析,其中生长(growth)时期、饥饿(starvation)时期、接合生殖(conjugation)时期特异性的可变剪接基因分别为49个、79个和135个。对可变剪接基因的功能进行分析表明其涉及的功能广泛且显著富集于蛋白激酶过程,提示可变剪接基因在嗜热四膜虫蛋白磷酸化和信号传导中具有重要作用。     

Mechanisms for the apoptosis of small cell lung cancer cells induced by anti-GD2 monoclonal antibodies: roles of anoikis

Anti-GD2 ganglioside antibodies could be a promising, novel therapeutic approach to the eradication of human small cell lung cancers, as anti-GD2 monoclonal antibodies (mAbs) induced apoptosis of small cell lung cancer cells in culture. In this study, we analyzed the mechanisms for the apoptosis of these cells by anti-GD2 mAbs and elucidated the mechanisms by which apoptosis signals were transduced via reduction in the phosphorylation levels of focal adhesion kinase (FAK) and the activation of a MAPK family member, p38, upon the antibody binding. Knock down of FAK resulted in apoptosis and p38 activation. The inhibition of p38 activity blocked antibody-induced apoptosis, indicating that p38 is involved in this process. Immunoprecipitation-immunoblotting analysis of immune precipitates with anti-FAK or anti-integrin antibodies using an anti-GD2 mAb revealed that GD2 could be precipitated with integrin and/or FAK. These results suggested that GD2, integrin, and FAK form a huge molecular complex across the plasma membrane. Taken together with the fact that GD2+ cells showed marked detachment from the plate during apoptosis, GD2+ small cell lung cancer cells seemed to undergo anoikis through the conformational changes of integrin molecules and subsequent FAK dephosphorylation.     

黑曲霉固态发酵生产单宁酶的条件优化

研究采用响应面法优化黑曲霉固态发酵生产单宁酶的培养条件。应用Plackett—Burman试验筛选出重要影响因子：五倍子粉含量、（NH4）2SO4浓度以及接种孢子量,最陡爬坡试验逼近最大响应区域。应用Box．Behnken响应面试验对重要影响因子进一步优化。得到最佳培养条件：每250mL三角瓶中装入1．0g五倍子粉、4．4g稻壳和0．5g麸皮、液固比（mL／g）2：1且营养盐溶液组成为（NH4）2s0421g/L、MgSO4·7H2O1g／L、NaCl1g／L,培养基pH自然,接种5．7×10^7个孢子后在30℃温度下培养4d。在此条件下,单宁酶产量从40U／g提高到114U／g,3次重复验证性试验平均值为115U／g,验证了模型的可靠性。     

水产废弃物胶原蛋白的提取

以水产废弃物为原料,利用酶法提取有价值的胶原蛋白。以胃蛋白酶为胶原蛋白提取用酶,鱼鳍和鱼鳞作为提取的原料,提取工艺为原料粉碎、脱钙、提取、纯化。鱼鳞和鱼鳍的胶原蛋白提取率分别达8．1％和6．6％。该方法对提高水产废弃物的综合利用具有重要的意义。