细菌非编码小RNA研究进展

细菌非编码小RNA(small non-coding RNA, sRNA)是一类长度在50~500个核苷酸, 不编码蛋白质的RNA。迄今, 在各种细菌中共发现超过150多种sRNA。它们通过碱基配对识别靶标mRNA, 在转录后水平调节基因的表达, 是细菌代谢、毒力和适应环境压力的重要调节因子。细菌sRNA的研究技术主要有基于生物信息学的计算机预测法和基于实验室的检测分析方法。这些方法所得到的sRNA都需要进行实验室确认, 然后再进一步通过各种实验手段研究其功能。     

Chromosome‐level genome assembly for the horned‐gall aphid provides insights into interactions between gall‐making insect and its host plant

The aphid Schlechtendalia chinensis is an economically important insect that can induce horned galls, which are valuable for the medicinal and chemical industries. Up to now, more than twenty aphid genomes have been reported. Most of the sequenced genomes are derived from free‐living aphids. Here, we generated a high‐quality genome assembly from a galling aphid. The final genome assembly is 271.52 Mb, representing one of the smallest sequenced genomes of aphids. The genome assembly is based on contig and scaffold N50 values of the genome sequence are 3.77 Mb and 20.41 Mb, respectively. Nine‐seven percent of the assembled sequences was anchored onto 13 chromosomes. Based on BUSCO analysis, the assembly involved 96.9% of conserved arthropod and 98.5% of the conserved Hemiptera single‐copy orthologous genes. A total of 14,089 protein‐coding genes were predicted. Phylogenetic analysis revealed that S. chinensis diverged from the common ancestor of Eriosoma lanigerum approximately 57 million years ago (MYA). In addition, 35 genes encoding salivary gland proteins showed differentially when S. chinensis forms a gall, suggesting they have potential roles in gall formation and plant defense suppression. Taken together, this high‐quality S. chinensis genome assembly and annotation provide a solid genetic foundation for future research to reveal the mechanism of gall formation and to explore the interaction between aphids and their host plants.     

土壤矿物与微生物相互作用的机理及其环境效应

土壤矿物与微生物相互作用是地球表层系统中重要的生态过程.微生物或生物分子与矿物间的吸附(粘附)是两者相互作用的基础.吸附(粘附)是一个由分子间力、静电力、疏水作用力、氢键和空间位阻效应等多种作用力或作用因素共同决定、影响的物理化学过程.因此,微生物和矿物的表面性质如表面电荷、疏水性和它们所处的环境条件如pH、电解质浓度、温度等,都影响着矿物-微生物吸附(粘附)过程.微生物细胞或酶可吸附于矿物表面,其结果是细胞代谢或酶活性会发生明显变化,并进一步影响土壤中诸多相关的生态、环境过程.结合4种典型的初始吸附理论:表面自由能热力学理论、DLVO理论、吸附等温线理论和表面复合物理论及本课题组近年来的研究成果,对土壤矿物与微生物相互作用的类型、机理、作用力和现代研究技术等方面的最新研究进展进行了较为全面的论述,对土壤矿物-微生物相互作用的环境效应进行了讨论,并就该领域今后研究工作的特点及应关注的问题进行了展望.     

界面发酵红曲霉的图像解析*

利用计算机视觉技术研究了红曲霉界面发酵过程中菌体形态变化与菌体生长的关系。在界面培养中通过检测前期菌落面积,后期隆起部分的表征体积——基于颜色变化的生长点分布,可以有效表示菌体生长状况。基于此建立了含有相应形态参数的动力学模型,该模型与常规动力学模型具有相似的表达形式。     

Ⅲ型纤连蛋白组件包含蛋白5通过抑制ERK1/2磷酸化抑制C3H10T1/2细胞成脂分化

旨在探究Ⅲ型纤连蛋白组件包含蛋白5(type Ⅲ domain-containing protein5,FNDC5)对C3H10T1/2细胞成脂分化的调控作用.利用qRT-PCR和Western印迹检测FNDC5在C3H10T1/2细胞成脂分化过程中的时序性表达规律;构建慢病毒包被的过表达/干扰FNDC5载体,转染C3...     

短期增温对中亚热带杉木人工幼林土壤氮磷耦合作用的影响

全球变暖引起陆地生态系统和整个生物圈一系列生态问题,未来全球平均气温的持续增加将使这些问题进一步加剧。目前增温、氮沉降和森林更新方式对中亚热带土壤氮磷等养分的影响已有部分研究,但增温对亚热带森林的氮磷耦合作用的影响仍然未知。以中亚热带杉木(Cunninghamia lanceolate)幼苗为研究对象,设置埋设电缆以加热土壤增温实验(增温幅度(5±0.5)℃),研究短期增温对土壤含水量、微生物生物量氮(MBN)、微生物生物量磷(MBP)、土壤氮磷养分,以及氮(N)、磷(P)耦合作用的影响。结果表明:短期增温对全氮、全磷无显著影响;增温第1年显著提高了有效氮、铵态氮(NH_4~+)和有效磷的含量,显著降低了MBN含量。增温第2年,土壤中有效磷、NH_4~+和MBP含量显著下降;短期增温虽然对土壤全N/P,有效N/P的影响不显著,但是增温使铵态氮/硝态亚硝态氮(NH_4~+/(NO_3~-+NO_2~-))显著降低;此外,增温显著降低了MBN/MBP,缓解了微生物对磷的限制。相关性分析表明,耦合作用不仅受N和P之间相互作用的影响,也受土壤温度、水分含量等其他因素的影响。研究表明,短期增温并未对中亚热带杉木人工幼林土壤氮磷耦合作用产生显著影响,但增温后降低了有效氮、有效磷的含量。因此,在未来全球变暖背景下,研究结果为中亚热带森林生态系统的的健康发展和科学管理提供重要的理论依据。     

5份粳型亲籼种质的生物学特性及育种利用

本研究以5份自主选育的粳型亲籼种质明恢413、明恢1616、明恢1707、明恢512和明恢509为研究材料,通过对其生物学特性和育种利用进行研究和评价,以期为今后开展粳型亲籼种质资源的选育和籼粳亚种间杂种优势的利用提供理论参考。生物学特性研究结果表明:5份粳型亲籼种质的播始历期偏长,株高适中,直立穗型,穗子小,着粒密,单株有效穗数多,结实率均在75%以上,千粒重中等。程式指数判定表明,明恢413、明恢1616、明恢1707、明恢512的籼粳属性为偏粳;明恢509的籼粳属性为粳。5份粳型亲籼种质均具有良好的亲籼性,与籼型两系不育系测交F1的结实率均在75%以上,最高可达89.80%;同时能够恢复野败型、印水型、K型等籼型三系不育系,测交F1的结实率均在80%以上,其恢复谱广、恢复力强。光合特性分析表明,其剑叶在生育后期能够保持较高的光合速率,利于籽粒的充实饱满。5份粳型亲籼种质的杂种优势表现:除播始历期、株高和千粒重外,在穗长、单株有效穗数、每穗总粒数、结实率、一次枝梗数和二次枝梗数等性状上均表现出明显的竞争优势。其中,穗长、一次枝梗数、二次枝梗数和每穗总粒数所表现出的竞争优势均超过10...     

In vitro eradication of abasic site-mediated DNA–peptide/protein cross-links by Escherichia coli long-patch base excision repair

Apurinic/apyrimidinic (AP or abasic) sites are among the most abundant DNA lesions. Numerous proteins within different organisms ranging from bacteria to human have been demonstrated to react with AP sites to form covalent Schiff base DNA–protein cross-links (DPCs). These DPCs are unstable due to their spontaneous hydrolysis, but the half-lives of these cross-links can be as long as several hours. Such long-lived DPCs are extremely toxic due to their large sizes, which physically block DNA replication. Therefore, these adducts must be promptly eradicated to maintain genome integrity. Herein, we used in vitro reconstitution experiments with chemically synthesized, stable, and site-specific Schiff base AP-peptide/protein cross-link analogs to demonstrate for the first time that this type of DPC can be repaired by Escherichia coli (E. coli) long-patch base excision repair. We demonstrated that the repair process requires a minimum of three enzymes and five consecutive steps, including: (1) 5′-DNA strand incision of the DPC by endonuclease IV; (2 to 4) strand-displacement DNA synthesis, removal of the 5′-deoxyribose phosphate-peptide/protein adduct-containing flap, and gap-filling DNA synthesis by DNA polymerase I; and (5) strand ligation by a ligase. We further demonstrated that endonuclease IV plays a major role in incising an AP-peptide cross-link within E. coli cell extracts. We also report that eradicating model AP-protein (11.2–36.1 kDa) DPCs is less efficient than that of an AP-peptide_10mer cross-link, supporting the emerging model that proteolysis is likely required for efficient DPC repair.