CCR-NB-LRR proteins MdRNL2 and MdRNL6 interact physically to confer broad-spectrum fungal resistance in apple (Malus × domestica)

Apple leaf spot, a disease caused by Alternaria alternata f. sp. mali and other fungal species, leads to severe defoliation and results in tremendous losses to the apple (Malus × domestica) industry in China. We previously identified three RPW8, nucleotide-binding, and leucine-rich repeat domain CC_R-NB-LRR proteins (RNLs), named MdRNL1, MdRNL2, and MdRNL3, that contribute to Alternaria leaf spot (ALT1) resistance in apple. However, the role of NB-LRR proteins in resistance to fungal diseases in apple remains poorly understood. We therefore used MdRNL1/2/3 as baits to screen ALT1-inoculated leaves for interacting proteins and identified only MdRNL6 (another RNL) as an interactor of MdRNL2. Protein interaction assays demonstrated that MdRNL2 and MdRNL6 interact through their NB-ARC domains. Transient expression assays in apple indicated that complexes containing both MdRNL2 and MdRNL6 are necessary for resistance to Alternaria leaf spot. Intriguingly, the same complexes were also required to confer resistance to Glomerella leaf spot and Marssonina leaf spot in transient expression assays. Furthermore, stable transgenic apple plants with suppressed expression of MdRNL6 showed hypersensitivity to Alternaria leaf spot, Glomerella leaf spot, and Marssonina leaf spot; these effects were similar to the effects of suppressing MdRNL2 expression in transgenic apple plantlets. The identification of these novel broad-spectrum fungal resistance genes will facilitate breeding for fungal disease resistance in apple.     

Divergent DNA methylation contributes to duplicated gene evolution and chilling response in tea plants

The tea plant (Camellia sinensis) is a thermophilic cash crop and contains a highly duplicated and repeat-rich genome. It is still unclear how DNA methylation regulates the evolution of duplicated genes and chilling stress in tea plants. We therefore generated a single-base-resolution DNA methylation map of tea plants under chilling stress. We found that, compared with other plants, the tea plant genome is highly methylated in all three sequence contexts, including CG, CHG and CHH (where H = A, T, or C), which is further proven to be correlated with its repeat content and genome size. We show that DNA methylation in the gene body negatively regulates the gene expression of tea plants, whereas non-CG methylation in the flanking region enables a positive regulation of gene expression. We demonstrate that transposable element-mediated methylation dynamics significantly drives the expression divergence of duplicated genes in tea plants. The DNA methylation and expression divergence of duplicated genes in the tea plant increases with evolutionary age and selective pressure. Moreover, we detect thousands of differentially methylated genes, some of which are functionally associated with chilling stress. We also experimentally reveal that DNA methyltransferase genes of tea plants are significantly downregulated, whereas demethylase genes are upregulated at the initial stage of chilling stress, which is in line with the significant loss of DNA methylation of three well-known cold-responsive genes at their promoter and gene body regions. Overall, our findings underscore the importance of DNA methylation regulation and offer new insights into duplicated gene evolution and chilling tolerance in tea plants.     

Transient characteristics of universal cells on human‐induced pluripotent stem cells and their differentiated cells derived from foetal stem cells with mixed donor sources

IntroductionIt is important to prepare ‘hypoimmunogenic’ or ‘universal’ human pluripotent stem cells (hPSCs) with gene‐editing technology by knocking out or in immune‐related genes, because only a few hypoimmunogenic or universal hPSC lines would be sufficient to store for their off‐the‐shelf use. However, these hypoimmunogenic or universal hPSCs prepared previously were all genetically edited, which makes laborious processes to check and evaluate no abnormal gene editing of hPSCs.MethodsUniversal human‐induced pluripotent stem cells (hiPSCs) were generated without gene editing, which were reprogrammed from foetal stem cells (human amniotic fluid stem cells) with mixing 2‐5 allogenic donors but not with single donor. We evaluated human leucocyte antigen (HLA)‐expressing class Ia and class II of our hiPSCs and their differentiated cells into embryoid bodies, cardiomyocytes and mesenchymal stem cells. We further evaluated immunogenic response of transient universal hiPSCs with allogenic mononuclear cells from survival rate and cytokine production, which were generated by the cells due to immunogenic reactions.ResultsOur universal hiPSCs during passages 10‐25 did not have immunogenic reaction from allogenic mononuclear cells even after differentiation into cardiomyocytes, embryoid bodies and mesenchymal stem cells. Furthermore, the cells including the differentiated cells did not express HLA class Ia and class II. Cardiomyocytes differentiated from transient universal hiPSCs at passage 21‐22 survived and continued beating even after treatment with allogenic mononuclear cells.     

MicroRNA profiles in Sorghum exposed to individual drought or heat or their combination

Sorghum is largely grown for food, fodder and for biofuel production in semi-arid regions where the drought or high temperature or their combination co-occur. Plant microRNAs (miRNAs) are integral to the gene regulatory networks that control almost all biological processes including adaptation to stress conditions. Thus far, plant miRNA profiles under separate drought or heat stresses have been reported but not under combined drought and heat. In this study, we report miRNA profiles in leaves of sorghum exposed to individual drought or heat or their combination. Approximately 29 conserved miRNA families represented by 80 individual miRNAs, 26 families represented by 47 members of less conserved or sorghum-specific miRNA families as well as 8 novel miRNA families have been identified. Of these, 25 miRNAs were found to be differentially regulated in response to stress treatments. The comparative profiling revealed that the miRNA regulation was stronger under heat or combination of heat and drought compared to the drought alone. Furthermore, using degradome sequencing, 48 genes were confirmed as targets for the miRNAs in sorghum. Overall, this study provides a framework for understanding of the miRNA-guided gene regulations under combined stresses.

     

黄土区不同恢复年限草地群落生物量及根冠比对氮添加的响应

大气氮沉降增加作为全球变化的主要环境问题之一,已引发人们的广泛关注,持续的氮沉降对草地生态系统的组成、结构和功能产生重要影响。为深入了解草地恢复进程中群落生物量和根冠比对氮沉降的响应,以黄土区3个不同恢复年限（初期12a、中期28a和后期37a）的天然草地为研究对象,通过设置6个氮添加水平,CK （0）、N1（2.34g m^-2a^-1）、N2（4.67g m^-2a^-1）、N3（9.34g m^-2a^-1）、N4（18.68g m^-2a^-1）、N5（37.35g m^-2a^-1）来测定草地群落地上生物量、地下生物量和总生物量,并计算根冠比和氮响应效率（NRE）。结果表明：（1）地上生物量在恢复中期最大,随氮添加梯度增加,地上生物量在恢复初期和恢复后期呈不显著上升趋势,对氮添加表现为非线性的正响应（ΔNRE>0）,在恢复中期呈不显著下降趋势,对氮添加表现为非线性的负响应（ΔNRE<0）。（2）群落地下生物量对氮添加无显著响应,总生物量只有在恢复后期的N4添加水平下,与对照存在显著差异。（3）根冠比在恢复初期时,N3添加水平下显著高于对照和其他氮添加水平,其余恢复年限对氮添加无显著响应。综上所述,通过分析比较黄土区不同恢复年限草地群落的地上、地下及总生物量和根冠比对氮添加的响应。建议对该区域开展试点实验,实行适应性草地管理,如进行两年一次刈割或轻度放牧（2只羊/hm²）,来探寻更科学有效的管理措施,使草地实现系统性恢复,进而满足生态系统容量和社会需求的变化。     

中国退耕还林还草对生态系统服务权衡与协同的影响

基于生态系统服务之间相关关系的时空动态变化,实现区域可持续发展与生态系统利益最大化,是兼顾生态保护、粮食安全、改善民生等多目标的重要途径。通过分析退耕还林还草工程县域粮食供给与地块水源涵养、土壤保持、防风固沙功能变化,评估退耕还林还草工程对生态系统关键服务之间权衡与协同关系的影响。结果表明：（1）2000-2015年,约76%工程县域的粮食供给增加,约46%和49%工程县域退耕还林还草地块的土壤保持与水源涵养功能呈提升态势,而风蚀区仅约2%工程县域的地块防风固沙功能明显提升。（2）1897个工程县域中,约24%县域粮食供给与地块水源涵养、约18%县域粮食供给与地块土壤保持之间呈显著地空间协同关系,风蚀区约38%县域粮食供给与地块防风固沙之间呈显著地空间权衡关系。（3）31%工程县域表现为多重生态系统服务供给区,其中双重服务供给县域占43%,三重服务供给县域占53%,四重服务供给县域占4%。（4）近16年,不同区域退耕还林还草工程导致粮食供给与调节服务之间呈现权衡与协同相互转换、权衡或协同程度变化等差异的空间相关关系,反映了多重生态系统服务联合权衡与协同在未来工程生态效应评估中的重要性。     

雄安新区河流健康评价

雄安新区地理环境敏感,生态环境较为脆弱,研究新区河流健康对维护区域水生态平衡,实施京津冀协同发展战略及疏解北京非首都功能具有重要意义。以雄安新区4条河流为研究对象,基于高分二号遥感影像、地理信息数据和实测数据,构建由水文水资源、河流水质、河流底泥、河流生物、河流生境和社会服务构成的河流健康评价指标体系,并用主客观赋值法得到各指标的综合权重,进而计算河流的综合健康指数,以此对河流健康情况进行评价。结果表明不同河流的准则层指标的健康指数和河流综合健康指数存在差异性,其中白沟引河综合健康指数为0.640,处于健康状态;府河的综合健康指数为0.484,处于亚健康状态;瀑河和孝义河均处于病态,综合健康指数为0.269和0.228。总体表现同一河流不同河段以及不同河流存在明显的空间异质性,府河和白沟引河的健康状态明显好于孝义河和瀑河,同时除孝义河不同采样点的健康情况没有差别,府河、瀑河和白沟引河三条河流不同采样点之间的健康状况存在一定的差别,河流入淀处健康状况普遍比中游健康状况好。这为后期生态需水及其整个新区的生态功能提升提供了参考依据。