Effects of alleviation of ecological stresses on an alpine tundra community over an eight-year period

Alpine tundra ecosystems such as those which are dominated by ericaceous dwarf shrubs in northern Scandinavia are characterised by low productivity, and this is due in part to low availability of nutrients and retardation of those microbial processes required for nutrient cycling. We conducted an eight‐year field experiment in an alpine tundra in northern Sweden, in which eleven treatments aimed at alleviating possible stresses were applied to field plots; these included addition of various forms of nitrogen and other nutrients, addition of lime, addition of available carbon, and reduction of possible adverse effects of secondary metabolites produced by the dwarf shrub Empetrum hermaphroditum. Nearly all of the treatments had statistically significant effects on at least some of the plant species present in the experiment. Addition of nitrogen and liming both had important effects in reducing E. hermaphroditum cover and in these treatments Deschampsia flexuosa rapidly became dominant. Manipulations that reduced E. hermaphroditum or its effects frequently also stimulated Vaccinium myrtillus and V. vitis‐idaea. Fertilisation and liming treatments also often caused decreases in the mosses Dicranum sp. and Pleurozium schreberi, and the lichen Cladina spp. Ordination analysis revealed that vascular plant community structure was most significantly altered by treatments involving mineral nitrogen addition and liming, moss community structure by treatments involving addition of available carbon and lichen community structure by treatments involving addition of some forms of nitrogen, lime and reduction of effects of E. hermaphroditum. Nearly all treatments significantly reduced total plant diversity (species richness) and several treatments reduced diversity of each of the vascular plant, lichen and moss groups. This reduction in diversity was frequently associated with monopolisation of plots by D. flexuosa. Decomposition rates of litter added to the plots were generally only weakly influenced by treatments, but several treatments (most notably those involving nitrogen addition) induced litter nitrogen immobilisation and increased litter microbial biomass levels. Humus nitrogen and microbial levels were also sometimes enhanced by the nitrogen addition treatments. This suggests that those plots dominated by D. flexuosa were likely to result in greater conservation of nitrogen in the litter relative to those dominated by E. hermaphroditum. An important exception to this pattern was the effects of the liming treatment which, although responsible for an increase in D. flexuosa, caused net losses of nitrogen and reduced microbial biomass both in the litter and the humus. Our data therefore suggest that treatments which have vastly differing consequences for humus properties and the decomposer subsystem (and ultimately conservation of nitrogen in the soil), but which alleviate an inherent stress, have similar consequences above‐ground, e.g. E. hermaphroditum decline, D. flexuosa enhancement, and associated reductions of plant diversity.     

Soil fertility shapes belowground food webs across a regional climate gradient

Changes in soil fertility during pedogenesis affect the quantity and quality of resources entering the belowground subsystem. Climate governs pedogenesis, yet how climate modulates responses of soil food webs to soil ageing remains unexplored because of the paucity of appropriate model systems. We characterised soil food webs along each of four retrogressive soil chronosequences situated across a strong regional climate gradient to show that belowground communities are predominantly shaped by changes in fertility rather than climate. Basal consumers showed hump‐shaped responses to soil ageing, which were propagated to higher‐order consumers. There was a shift in dominance from bacterial to fungal energy channels with increasing soil age, while the root energy channel was most important in intermediate‐aged soils. Our study highlights the overarching importance of soil fertility in regulating soil food webs, and indicates that belowground food webs will respond more strongly to shifts in soil resources than climate change.     

Socioeconomic status and adiposity in childhood: a systematic review of cross-sectional studies 1990-2005

Background: Sobal and Stunkard's review (1989) of 34 studies from developed countries published after 1941, found inconsistent relationships between socioeconomic status (SES) and childhood adiposity. Inverse associations (36%), no associations (38%), and positive associations (26%) were found in similar proportions. In view of the trends in pediatric obesity, the relationship between SES and adiposity may have changed. Objective: To describe the cross‐sectional association between SES and adiposity in school‐age children from western developed countries in epidemiological studies since 1989. Methods and Procedures: PubMed database was searched to identify potentially relevant publications. Epidemiological studies from western developed countries presenting cross‐sectional data on the bivariate association between an SES indicator and objectively measured adiposity in childhood (5–18 years), carried out after 1989 were included. SES indicators included parental education, parental occupation, family income, composite SES, and neighborhood SES. Results: Forty‐five studies satisfied the review criteria. SES was inversely associated with adiposity in 19 studies (42%), there was no association in 12 studies (27%), and in 14 studies (31%) there was a mixture of no associations and inverse associations across subgroups. No positive SES‐adiposity associations were seen in unadjusted analyses. With parental education as the SES indicator, inverse associations with adiposity were found in 15 of 20 studies (75%). Discussion: Research carried out within the past 15 years finds that associations between SES and adiposity in children are predominately inverse, and positive associations have all but disappeared. Research is needed to understand the mechanisms through which parental social class influences childhood adiposity.     

A multicopy suppressor screening approach as a means to identify antibiotic resistance determinant candidates in <Emphasis Type="Italic">Yersinia pestis</Emphasis>

Background  

Yersinia pestis is the causative agent of plague and a potential agent of bioterrorism and biowarfare. The plague biothreat and the emergence of multidrug-resistant plague underscore the need to increase our understanding of the intrinsic potential of Y. pestis for developing antimicrobial resistance and to anticipate the mechanisms of resistance that may emerge in Y. pestis. Identification of Y. pestis genes that, when overexpressed, are capable of reducing antibiotic susceptibility is a useful strategy to expose genes that this pathogen may rely upon to evolve antibiotic resistance via a vertical modality. In this study, we explored the use of a multicopy suppressor, Escherichia coli host-based screening approach as a means to expose antibiotic resistance determinant candidates in Y. pestis.     

Determinants for hairpin formation in Tn10 transposition

Tn10 transposition involves the formation of a hairpin intermediate at the transposon termini. Here we show that hairpin formation exhibits more stringent DNA sequence requirements at the terminal two base pairs than either transpososome assembly or first strand nicking. We also observe a significant DNA distortion at the terminal base pairs upon transpososome assembly by chemical nuclease footprinting. Interestingly, mutations at these positions do not necessarily inhibit the formation of the distortion. However, it remains a possibility that the inhibitory effect of these mutations is due to a defect in protein-DNA interactions subsequent to this deformation. Terminal base pair mutations also inhibited strand transfer, providing evidence that transposase interactions with the terminal residues on both 'transferred' and 'non-transferred' strands are important for hairpin formation. We also demonstrate that mutation of a highly conserved tyrosine residue that is a component of the YREK motif, Y285, results in a phenotype comparable to that of the terminal base pair mutations. In contrast, a mutation at another conserved position, W265, is shown to relax the specificity of the hairpin formation reaction.     

IHF-independent assembly of the Tn10 strand transfer transpososome: implications for inhibition of disintegration

The frequency of DNA transposition in transposition systems that employ a strand transfer step may be significantly affected by the occurrence of a disintegration reaction, a reaction that reverses the strand transfer event. We have asked whether disintegration occurs in the Tn10 transposition system. We show that disintegration substrates (substrates constituting one half of the strand transfer product) are assembled into a transpososome that mimics the strand transfer intermediate. This strand transfer transpososome (STT) does appear to support an intermolecular disintegration reaction, but only at a very low level. Strikingly, assembly of the STT is not dependent on IHF, a host protein that is required for de novo assembly of all previously characterized Tn10 transpososomes. We suggest that disintegration substrates are able to form both transposon end and target type contacts with transposase because of their enhanced conformational flexibility. This probably allows the conformation of DNA within the complex that prevents the destructive disintegration reaction, and is responsible for relaxing the DNA sequence requirements for STT formation relative to other Tn10 transpososomes.     

Associations between multiple measures of parental feeding and children's adiposity in United Kingdom preschoolers

Objective: Research into the association between parental control over feeding and children's adiposity has produced inconclusive results. Some studies have found parental control to be associated with unhealthy food choices and disordered intake regulation, whereas others have found favorable or null associations between control and adiposity. This study hypothesized that variability in measures of parental feeding could contribute to these discrepancies. Scales from a range of existing parental feeding questionnaires were used together, in the same large sample of children, to examine associations with adiposity. Research Methods and Procedures: Associations between scores on scales from three published parental feeding questionnaires [Child Feeding Questionnaire (CFQ); Preschooler Feeding Questionnaire (PFQ); and Parental Feeding Style Questionnaire (PFSQ)] and children's BMI z‐scores, calculated from measured heights and weights, were examined in a socioeconomically diverse sample of 439 parents and their 3‐ to 5‐year‐old children. Results: Higher scores on CFQ Pressure to Eat and PFQ Pushing the Child to Eat More were significantly associated with lower BMI z‐score, while PFSQ Prompting to Eat, CFQ Restriction, PFSQ Instrumental Feeding, and PFSQ Emotional Feeding were unassociated with BMI z‐score. Discussion: These results suggest that parents of leaner children are more likely to encourage their children to eat. Other feeding strategies seemed to have negligible relationships with children's BMI z‐scores at this stage. Longitudinal and genetically informed designs are needed to clarify the causal pathways between parental feeding and children's adiposity.     

Coordination of aboveground and belowground responses to local‐scale soil fertility differences between two contrasting Jamaican rain forest types

There is growing interest in understanding how declining soil fertility in the prolonged absence of major disturbance drives ecological processes, or ‘ecosystem retrogression’. However, there are few well characterized study systems for exploring this phenomenon in the tropics, despite tropics occupying over 40% of the Earth's terrestrial surface. We studied two types of montane rain forest in the Blue Mountains of Jamaica that represent distinct stages in ecosystem development, i.e. an earlier stage with shallow organic matter and a late stage with deep organic matter (hereafter ‘mull’ and ‘mor’ stages). We characterized responses of soil fertility and plant, soil microbial and nematode communities to the transition from mull to mor and whether these responses were coupled. For soil abiotic properties, we found this transition led to lower amounts of both nitrogen (N) and phosphorus (P) and an enhanced N to P ratio. This led to shorter‐statured and less diverse forest, and convergence of tree species composition among plots. At the whole community (but not individual species) level foliar and litter N and P diminished from mull to mor, while foliar N to P and resorption efficiency of P relative to N increased, indicating increasing P relative to N limitation. We also found impairment of soil microbes (but not nematodes) and an increasing role of fungi relative to bacteria during the transition. Our results show that retrogression phenomena involving increasing nutrient (notably P) limitation can be important drivers in tropical systems, and are likely to involve aboveground–belowground feedbacks whereby plants produce litter of diminishing quality, impairing soil microbial processes and thus reducing the supply of nutrients from the soil for plant growth. Such feedbacks between plants and the soil, mediated by plant litter and organic matter quality, may serve as major though often overlooked drivers of long term environmental change.