Biochemical differences between embryogenic and nonembryogenic callus of Picea abies (L.) Karst

Both embryogenic and nonembryogenic calli of Picea abies (L.) Karst. were initiated from the hypocotyl region of immature embryos. The two callus phenotypes were manually separated and subsequently maintained independently, but under identical culture conditions. Biochemical analysis of the two phenotypes revealed significant differences in ethylene evolution rate and in concentrations of glutathione and total reductants. Due to the constancy of the genetic background, age and growth conditions of the two callus types, differences in the measured quantities are not likely to be traceable to the genetic origin of the callus and serve to highlight biochemical changes associated with somatic embryogenesis in Norway spruce.Abbreviations GSH glutathione - 2,4-D 2,4-dichlorophenoxyacetic acid - BA N⁶-benzyl adenine - E embryogenic - NE nonembryogenic - NS Norway spruce     

Can Zipf's law be adapted to normalize microarrays?

Background  

Normalization is the process of removing non-biological sources of variation between array experiments. Recent investigations of data in gene expression databases for varying organisms and tissues have shown that the majority of expressed genes exhibit a power-law distribution with an exponent close to -1 (i.e. obey Zipf's law). Based on the observation that our single channel and two channel microarray data sets also followed a power-law distribution, we were motivated to develop a normalization method based on this law, and examine how it compares with existing published techniques. A computationally simple and intuitively appealing technique based on this observation is presented.     

THE EFFECT OF THE H ION CONCENTRATION ON THE AVAILABILITY OF IRON FOR CHLORELLA SP

The data obtained in these experiments indicate clearly that unless the necessary precautions are taken to keep the iron of the culture medium in solution the results obtained by varying the H ion concentration will not represent the true effect of this factor on growth. The availability of iron in nutrient solutions has been the subject of numerous recent investigations and it is now known that iron is precipitated at the lower hydrogen ion concentrations, that the iron of certain iron salts is less likely to be precipitated than that of others, and that certain salts of organic acids tend to keep the iron in solution. In general, ferric citrate seems to be the most favorable source of iron. In addition to chemical precipitation, however, it is also possible for the iron to be removed by adsorption on an amorphous precipitate such as calcium phosphate. As this precipitate is frequently formed when nutrient solutions are made alkaline, this may account for the discordant results reported in the literature as to the availability of certain forms of iron. By omitting calcium from the culture solution iron can be maintained in a form available for growth in alkaline solutions by the addition of sodium citrate. In such solutions the maximum growth of Chlorella occurred at pH 7.5. The alkaline limit for growth has not been established as yet. In investigating the availability of iron at varying concentrations of the hydrogen ion, changes in the pH value of the solution during the course of an experiment should also be taken into account. This is especially important in unbuffered solutions. The differential absorption of the ions of ammonium salts may cause a marked increase in the hydrogen ion concentration, which in turn will cause an increase in the solubility of iron. In strongly buffered solutions as used in these experiments this effect is slight.