Zooplankton prey selection by juvenile fish in Nova Scotian Shelf basins

The stomach contents of fish <100 mm standard length (SL)and fish >100 mm SL collected during June and October intwo deep basins on the Scotian Shelf, showed that juvenile co(and silver hake fed primarily on the two most abundant speciesof zooplankton in the basins: Calanus finmarchicus and Meganyctiphanesnorvegica. These zooplankton were abundant in the basin: duringthe 2 months, forming high concentrations at depths below 200m during the day. In June fish (<100 mm SL) concentratedin the upper 50 m during both day and night. Cod and wolffislcollected between 195 and 240 m had a large percentage of C.finmarchicusin their stomachs suggesting that these fish exploited the highconcentrations of C.finmarchicus below 200 m depth There wasno evidence that Calanus hyperboreus was eaten by any juvenilefish species. Calanus finmarchicus was the most common preyof cod feeding in the top 50 m, but the percentages o C.finmarchicusstages IV and V were lower in the stomachs than in the watercolumn. Cod showed ; strong preference for M.norvegica, withthis prey species having a modified Ivlev's index of 1 indicatingthat cod were highly selective for this species. There was noevidence that C.hyperboreus. stage IV was eaten by any of thespecies offish. Silver hake and dogfish (>100 mm SL) bothfeed oi M.norvegica and C.finmarchicus in the deep regions ofthe basins. In October, silver hake was the most common juvenilefish in the basins, feeding primarily on small stages of M.norvegica.The populations of fish (>100 mm SL) in the basins were mainlyspecies known to feed heavily or euphausiids. The two basinsare unique regions of the shelf because of the large populationsof Calanus copepods and M.norvegica they contain all the yeararound, thereby providing an atrractive feeding ground for manyspecies of fish, particularly silver hake.     

Peroxidase: Changes in soluble and bound forms during maturation and ripening of apples

Peroxidase (POD) enzymes, both soluble and bound, have been implicated in the ripening process of a number of fruits. However, their roles are poorly understood. The aim of this study was to define clearly the classes of POD activity in apple parenchyma tissues on the basis of their solubility in salt solutions, to determine the subcellular localisation of ionically‐bound POD activity, and to determine whether soluble‐ or ionically‐bound POD activities exhibit any relationships with maturation and ripening. The cortical parenchyma of apples ( Malus domestica Borkh cv. Cox's orange pippin) was investigated for changes in POD activity during maturation and post‐harvest storage at 0, 4, and 8°C at 100% relative humidity (RH), and controlled atmosphere (CA) storage (4°C in 1.25% O₂ and 0.5% CO₂). The parenchyma cells contained both soluble and ionically‐bound POD activity. The ionically‐bound POD was located in the cell wall in the middle lamella, plasmodesmata and cell corners, and could be extracted quantitatively with 0.4 M CaCl₂ at neutral pH to leave a POD‐free residue. During maturation, both forms of activity increased on a 'per apple' basis, but decreased as a function of fresh weight. Under all conditions of storage, soluble POD exhibited a peak of activity at approximately the mid‐point of ripening‐related softening; this event may constitute a biochemical marker. In contrast, ionically‐bound POD generally decreased during ripening, except under CA storage. CA storage inhibited ripening‐related softening after an initial loss of firmness. However, softening resumed after transfer of apples to normal atmosphere storage at 8°C. This may provide a new insight into controlling tissue softening.     

Tissue-related changes in methyl-esterification of pectic polysaccharides in cauliflower (Brassica oleracea L. var. botrytis) stems

Pectic substances are a major component of cell walls in vegetable plants and have an important influence on plant food texture. Cauliflower (Brassica oleracea L. var. botrytis) stem sections at different regions of the mature plant stem have been monitored for tissue-related changes in the native pectic polysaccharides. Chemical analysis detected appreciable differences in the degree of methyl-esterification (ME) of pectic polysaccharides. About 65% of galacturonic acid (GalpA) residues were methyl-esterified in floret tissues. Relative ME showed a basipetal decrease, from 94% in the upper stem to 51% in the lower-stem vascular tissues. The decrease was not related to a basipetal increase in glucuronic acid (GlcpA) residues. The monoclonal antibodies, JIM 5 and JIM 7, produced distinct labelling patterns for the relatively low-methyl-esterified and high-methyl-esterified pectin epitopes, respectively. Labelling was related to cell type and tissue location in the stem. Floret cell walls contained epitopes for both JIM 5 and JIM 7 throughout the wall. Stem vascular tissues labelled more strongly with JIM 5. Whereas pith parenchyma in the upper stem labelled more strongly with JIM 7, in the lower-stem pith parenchyma, JIM 5 labelling predominated. Localization of pectic polysaccharide epitopes in cell walls provides an insight into how structural modifications might relate to the textural and nutritional properties of cell walls. Received: 16 August 1997 / Accepted: 20 December 1997     

Microbial Transport, Survival, and Succession in a Sequence of Buried Sediments

Abstract Two chronosequences of unsaturated, buried loess sediments, ranging in age from <10,000 years to >1 million years, were investigated to reconstruct patterns of microbial ecological succession that have occurred since sediment burial. The relative importance of microbial transport and survival to succession was inferred from sediment ages, porewater ages, patterns of abundance (measured by direct counts, counts of culturable cells, and total phospholipid fatty acids), activities (measured by radiotracer and enzyme assays), and community composition (measured by phospholipid fatty acid patterns and Biolog substrate usage). Core samples were collected at two sites 40 km apart in the Palouse region of eastern Washington State, near the towns of Washtucna and Winona. The Washtucna site was flooded multiple times during the Pleistocene by glacial outburst floods; the Winona site elevation is above flood stage. Sediments at the Washtucna site were collected from near surface to 14.9 m depth, where the sediment age was approximately 250 ka and the porewater age was 3700 years; sample intervals at the Winona site ranged from near surface to 38 m (sediment age: approximately 1 Ma; porewater age: 1200 years). Microbial abundance and activities declined with depth at both sites; however, even the deepest, oldest sediments showed evidence of viable microorganisms. Same-age sediments had equal quantities of microorganisms, but different community types. Differences in community makeup between the two sites can be attributed to differences in groundwater recharge and paleoflooding. Estimates of the microbial community age can be constrained by porewater and sediment ages. In the shallower sediments (<9 m at Washtucna, <12 m at Winona), the microbial communities are likely similar in age to the groundwater; thus, microbial succession has been influenced by recent transport of microorganisms from the surface. In the deeper sediments, the populations may be considerably older than the porewater ages, since microbial transport is severely restricted in unsaturated sediments. This is particularly true at the Winona site, which was never flooded.     

Analysis of normal and neoplastic lymphocyte surface-labeled proteins by two-dimensional polyacrylamide gel electrophoresis

Normal and neoplastic murine and human lymphocytes were surface-labeled by lacto-peroxidase-catalyzed radioiodination, and the cell lysates were subjected to two-dimensional polyacrylamide gel electrophoresis (2D-PAGE) analyses, combining isoelectric focusing in the first dimension and sodium dodecyl sulfate-PAGE (SDS-PAGE) in the second dimension. 2D-PAGE autoradiogram patterns were reproducible and reflected differences in cell types. A string of spots with a Mr of 100K was tentatively identified as a new T-cell marker (Tp100) which was present in all murine and human T cells examined including human T lymphomas. Murine and human B cells displayed markers characteristic to B cells of each species with some similarities between them. Human lymphomas and murine cell lines showed markers which were absent or only weakly visible in normal cells. Thus, 2D-PAGE analysis of lymphocyte surface proteins proved to be a method useful for searching for various markers.     

Cyclic 3'', 5''-AMP relay in dictyostelium discoideum. IV. Recovery of the cAMP signaling response after adaptation to cAMP

In dictyoselium discoideum, an increase in extracellular cAMP activates adenylate cyclase, leading to an increase in intracellular cAMP and the rate of cAMP secretion. Cells adapt to any constant cAMP stimulus after several minutes, but still respond to an increase in the concentration of the stimulus. We have now characterized the decay of adaptation (deadaptation) after the removal of cAMP stimuli. Levels of adaptation were established by the perfusion of [(3)H]adenosine-labeled amoebae with a defined cAMP stimulus. After a variable recovery period, the magnitude of the signaling response to a second stimulus was measured; its attenuation was taken as a measure of residual adaption to the first stimulus. The level of adaptation established by the first stimulus depended on both its magnitude and duration. Deadaptation began as soon as the first stimulus was removed. The magnitude of the response to the second stimulus increased with the recovery time in a first-order fashion, with a t(1/2)=3-4 min for stimuli of 10(-8) M to 10(-5) M cAMP. Responses to test stimuli, although reduced in magnitude, had an accelerated time-course when they closely followed a prior response that had not completely subsided. This effect is called priming; we believe it reveals a reversible, rate-limiting step that modulates the onset and termination of the signaling responses of amoebae that have not recently responded to a cAMP stimulus. We have suggested that the cAMP signaling response is controlled by two antagonistic cellular processes, excitation and adaptation. The data reported here imply that both the rate of rise in the adaptation process and the final level reached depend on the occupancy of cAMP surface receptors and that the decay of adaptation when external cAMP is removed proceeds with first-order kinetics.     

Development of a core outcome set for studies involving patients undergoing major lower limb amputation for peripheral arterial disease: study protocol for a systematic review and identification of a core outcome set using a Delphi survey

Background

The development of a standardised reporting set is important to ensure that research is directed towards the most important outcomes and that data is comparable. To ensure validity, the set must be agreed by a consensus of stakeholders including patients, healthcare professionals and lay representatives. There is currently no agreed core outcome set for patients undergoing major lower limb amputation for peripheral arterial disease (PAD) for either short- or medium-term research outcomes. By developing these sets we aim to rationalise future trial outcomes, facilitate meta-analysis and improve the quality and applicability of amputation research.

Methods/design

We will undertake a comprehensive systematic review of studies of patients undergoing major lower limb amputation for PAD. Data regarding all primary and secondary outcomes reported in relevant studies will be extracted and summarised as outcome domains. We will then undertake focus groups with key stakeholders (patients, carers, health and social care workers) to collect qualitative data to identify the main short- and medium-term research outcomes for patients undergoing major lower limb amputation. Results of the systematic review and focus groups will be combined to create a comprehensive list of potential key outcomes. Stakeholders (patients, researchers and health and social care workers) will then be polled to determine which of the outcomes are considered to be important in a general context using a three-phase Delphi process. After preliminary analysis, results will be presented at a face-to-face meeting of key stakeholders for discussion and voting on the final set of core outcomes. This project is being run in parallel with a feasibility trial assessing perineural catheters in patients undergoing lower limb amputation (the PLACEMENT trial). Full ethical approval has been granted for the study (Wales REC 3 reference number 16/WA/0353).

Discussion

Core outcome sets will be developed for short- and medium-term outcomes of research involving patients undergoing major lower limb amputation for PAD. This will help with the design of future trials and facilitate meta-analyses of trial data.

Trial registration

PROSPERO: CRD42017059329. Registered on 30 March 2017.COMET: 975. Registered on 5 April 2017.