Energy and greenhouse gas balance of bioenergy production from poplar and willow: a review

Short‐rotation woody crops (SRWC) such as poplar and willow are an important source of renewable energy. They can be converted into electricity and/or heat using conventional or modern biomass technologies. In recent years many studies have examined the energy and greenhouse gas (GHG) balance of bioenergy production from poplar and willow using various approaches. The outcomes of these studies have, however, generated controversy among scientists, policy makers, and the society. This paper reviews 26 studies on energy and GHG balance of bioenergy production from poplar and willow published between 1990 and 2009. The data published in the reviewed literature gave energy ratios (ER) between 13 and 79 for the cradle‐to‐farm gate and between 3 and 16 for cradle‐to‐plant assessments, whereas the intensity of GHG emissions ranged from 0.6 to 10.6 g CO₂ Eq MJ_biomass^?1 and 39 to 132 g CO₂ Eq kWh^?1. These values vary substantially among the reviewed studies depending on the system boundaries and methodological assumptions. The lack of transparency hampers meaningful comparisons among studies. Although specific numerical results differ, our review revealed a general consensus on two points: SRWC yielded 14.1–85.9 times more energy than coal (ER_coal～0.9) per unit of fossil energy input, and GHG emissions were 9–161 times lower than those of coal (GHG_coal～96.8). To help to reduce the substantial variability in results, this review suggests a standardization of the assumptions about methodological issues. Likewise, the development of a widely accepted framework toward a reliable analysis of energy in bioenergy production systems is most needed.     

Plant Size-dependent Escaping Behavior of Gregarious Nymphs of the Desert Locust, Schistocerca gregaria

The present study involves the tracking of marching bands of more than 300,000 gregarious nymphs of the desert locust, Schistocerca gregaria, to examine shelter plant preference and how species and size of shelter plants and nymphal group sizes jointly influence the escaping behavior of 4th- and 5th-instar gregarious nymphs. Field observations are conducted during daytime and night-time in the Sahara Desert in Mauritania. Three dominant plant species have been identified at the survey site: Hyoscyamus muticus, Panicum turgidum, and Nucularia perrini. The smallest mean plant size among the three plant species is H. muticus. Gregarious nymphs perch on all the three plant species irrespective of time, and form various sizes of groups ranging from <10 to >10,000 nymphs. Groups of gregarious locusts perching on the plants show either escaping or sheltering behavior in response to an approaching observer. Percentages of nymphal groups showing escaping behavior for H. muticus, P. turgidum and N. perrini are 96.4, 47.6 and 19.5 %, respectively. Defensive behavior is not affected by nymphal group size but by species and size of shelter plants. Nymphal groups tend to show escaping behavior when their perching plants are relatively small. No groups escape from their perching plants during night. These results might indicate that gregarious nymphs do not have a strong shelter plant preference and change their defensive behavior depending on species and size of sheltering plants and light conditions.     

Polymorphism of the Thymidylate Synthase Gene of Pneumocystis carinii from Different Host Species

Pneumocystis carinii is an opportunistic agent found in the lung of various mammals which often causes severe pneumonia in immunocompromised humans, especially in AIDS patients. In the past several years significant additions have been made to the collection of knowledge we have concerning the genetic diversity of P. carinii. These additions provide new understanding of Pneumocystis transmission and the effect of possible reservoirs of Pneumocystis in the various species. In this study, a 400-bp fragment of the thymidylate synthase (TS) gene of P. carinii has been amplified by PCR from 43 parasite isolates obtained from 4 mammalian host species: rat, mouse, rabbit and human. A probe selected from the TS gene sequence of rat-derived P. carinii was hybridized with the amplified products from rat- and mouse-derived P. carinii, but not with rabbit or human P. carinii DNA. Restriction profiles were performed on amplified fragments from all isolates, and the 4 nucleotide sequences of the TS gene fragment amplifed from rat, mouse, rabbit and human P. carinii were determined. Differences were detected in the gene fragment in P. carinii isolates from the 4 host species; however no difference was revealed in P. carinii isolates within a single host species, whatever the host strain or its geographic origin. Thus, the sequence differences of the P. carinii TS gene appeared as host-species specific. A specific probe which recognized all human P. carinii isolates was defined.     

Catabolism of Tryptophan by Trypanosoma evansi

ABSTRACT. Trypanosoma brucei gambiense , which causes human African trypanosomiasis, catabolizes the aromatic amino acid tryptophan via an initial aminotransferase catalyzed reaction to form several indole end products, which have been suggested to contribute to the pathogenesis of trypanosomiasis. To determine if this same pathway exists in T. evansi , the closely related trypanosome pathogen of domestic animals, tryptophan catabolism was examined in vitro and in vivo. As is the case with human African trypanosomes, T. evansi catabolized tryptophan to form indole-3-pyruvic acid and smaller amounts of indole-3-acetic acid and indole-3-lactic acid. Large concentrations of indole-3-pyruvic acid are excreted in urine of trypanosome-infected mice. However, indole-3-ethanol could not be detected in incubates of T. evansi or T. b. gambiense , even though the latter species had previously been reported to form this neutral metabolite. A new, previously unreported tryptophan metabolite was isolated and partially characterized from incubates of T. evansi and T. b. gambiense. Although the functional significance of tryptophan catabolism to trypanosomatids remains obscure, the pathway is quantitatively significant in all species examined thus far.     

<Emphasis Type="Italic">Dunaliella salina</Emphasis> exopolysaccharides: a promising biostimulant for salt stress tolerance in tomato (<Emphasis Type="Italic">Solanum lycopersicum</Emphasis>)

Microalgal exopolysaccharides represent a potential sustainable alternative for the enhancement and protection of agricultural crops including management of both biotic and abiotic stress. In the present study, we investigated the potential of Dunaliella salina exopolysaccharides (PS) to attenuate the effect of salt stress on growth of Solanum lycopersicum, which was grown under different salinity levels (3 and 6 g L^?1 NaCl). The effects of PS treatment on plant growth, osmoprotectant molecules, protein content, and antioxidant enzymes activities of tomato plants under salt stress were analyzed. A metabolomics study showed that the exopolysaccharides released by D. salina contained sulfated moiety along with carbohydrates and uronic acids. The application of sulfated exopolysaccharides on tomato plants alleviated the salt stress and mitigated the decrease in length and dry weight of the plant’s shoot and root systems, as well as that of potassium (K⁺), and K⁺/Na⁺ ratio. Furthermore, the increase in proline, phenolic compounds, Na⁺, and antioxidant enzymes (CAT, POD, SOD) activities caused by salt stress were attenuated after the exopolysaccharide treatment. GC-MS metabolomics analysis showed that PS treatment allowed the activation and/or inhibition of various metabolic pathways involved in the plant’s tolerance to stress such as jasmonic acid-dependent pathways. This study shows the potential of microalgal exopolysaccharides for enhancing tomato tolerance to salt stress and highlights the possibility of their use as plant growth biostimulants under harsh environmental conditions.     

Muscle activity damps the soft tissue resonance that occurs in response to pulsed and continuous vibrations.

This study tested the hypotheses that when the excitation frequency of mechanical stimuli to the foot was close to the natural frequency of the soft tissues of the lower extremity, the muscle activity increases 1) the natural frequency and 2) the damping to minimize resonance. Soft tissue vibrations were measured with triaxial accelerometers, and muscle activity was measured by using surface electromyography from the quadriceps, hamstrings, tibialis anterior, and triceps surae groups from 20 subjects. Subjects were presented vibrations while standing on a vibrating platform. Both continuous vibrations and pulsed bursts of vibrations were presented, across the frequency range of 10-65 Hz. Elevated muscle activity and increased damping of vibration power occurred when the frequency of the input was close to the natural frequency of each soft tissue. However, the natural frequency of the soft tissues did not change in a manner that correlated with the frequency of the input. It is suggested that soft tissue damping may be the mechanism by which resonance is minimized at heel strike during running.     

The Phlesirtes complex (Orthoptera,Tettigoniidae, Conocephalinae,Conocephalini) reviewed: integrating morphological,molecular, chromosomal and bioacoustic data

The tettigoniid genus Phlesirtes Bolivar and its allies are reviewed. Morphological, ecological and molecular data prompt the erection of the new genus Chortoscirtes gen.n. with type species Xiphidion meruense Sjöstedt. The genera Phlesirtes, Chortoscirtes, Karniella and Naskreckiella are characterized by morphological characters supported by molecular, acoustic, ecological and chromosomal data. Four species, Chortoscirtes pseudomeruensis sp.n. , C. masaicus sp.n. , C. puguensis sp.n. and C. serengeti sp.n. , are described from localities in northern and coastal Tanzania and one Karniella, K. crassicerca sp.n. , is described from Uganda. The following comb n. are proposed: Phlesirtes kibonotensis (Sjöstedt) and Phlesirtes kilimandjaricus (Sjöstedt). Subtribal status is proposed for the four investigated African genera. A key to the Chortoscirtes species is provided.     

SavvyCNV: Genome-wide CNV calling from off-target reads

Identifying copy number variants (CNVs) can provide diagnoses to patients and provide important biological insights into human health and disease. Current exome and targeted sequencing approaches cannot detect clinically and biologically-relevant CNVs outside their target area. We present SavvyCNV, a tool which uses off-target read data from exome and targeted sequencing data to call germline CNVs genome-wide. Up to 70% of sequencing reads from exome and targeted sequencing fall outside the targeted regions. We have developed a new tool, SavvyCNV, to exploit this ‘free data’ to call CNVs across the genome. We benchmarked SavvyCNV against five state-of-the-art CNV callers using truth sets generated from genome sequencing data and Multiplex Ligation-dependent Probe Amplification assays. SavvyCNV called CNVs with high precision and recall, outperforming the five other tools at calling CNVs genome-wide, using off-target or on-target reads from targeted panel and exome sequencing. We then applied SavvyCNV to clinical samples sequenced using a targeted panel and were able to call previously undetected clinically-relevant CNVs, highlighting the utility of this tool within the diagnostic setting. SavvyCNV outperforms existing tools for calling CNVs from off-target reads. It can call CNVs genome-wide from targeted panel and exome data, increasing the utility and diagnostic yield of these tests. SavvyCNV is freely available at https://github.com/rdemolgen/SavvySuite.