Measurement of diameters of estuarine bacteria and particulates in natural water samples by use of a submicron particle analyzer

Desulfovibrio vulgaris strain Madison outcompetedMethanobacterium strain ivanov for hydrogen when sulfate was in excess because of higher cell yield and growth rate and a greater affinity for hydrogen as a consequence of a lower Km and higher Vmax for in vivo hydrogenase activity.Desulfovibrio vulgaris displayed a growth yield of 1.1 g/mol H₂, a Km for tritium exchange of 4 M, and a specific in vivo hydrogenase activity of 2.17 DPM³H₂O×10³/g cell protein/h; whereasMethanobacterium strain ivanov had a yield of 0.6 g/mol H₂, a Km for tritium exchange of 14 M, and a specific in vivo hydrogenase activity of 0.38 DPM³H₂O×10³/g cell protein/h. Under these physiological conditions, the Gibbs free-energy change associated with methanogenesis and sulfidogenesis from H₂ was calculated to be-47.4 kJ/mol and-62.9 kJ/mol, respectively. When sulfidogenesis was limited by sulfate concentration, the methanogen was able to successfully compete with the sulfidogen for hydrogen. Competition between methanogens and sulfidogens for hydrogen is explained in terms of thermodynamic, kinetic, and other important considerations not discussed in the previous literature.     

Glucose metabolism and recycling of radioactively labelled glucose in the Zucker genetically obese rat (fa/fa).

1. The glucose metabolism of conscious lean and obese rats of the Zucker strain was studied by using doubly labelled glucose ([6-3H,U-14C]glucose) given by intravenous injection as a single dose. Fed animals were used, allowing the study to be made in conditions favouring active lipogenesis. 2. At any given prior food intake (consumption during preceding 24 h), the irreversible glucose replacement rate, R0, was considerably higher in the growing obese rat (4-6 months old) when both of these variables were scaled in terms of the total body water of the animals. 3. When scaled in a similar way, the minimal mass of glucose (Mmin.) was also larger in the obese rats. The mean transit time, t, through the pool did not differ significantly between the two groups, but there was a tendency for this to be shorter in obese rats. 4. There was no difference in the proportion of 14C (derived from metabolized labelled glucose) that recycled as [14C]-glucose after passing through the pyruvate pool in the two groups of rats if the rate of recycling of radioactivity (Rc) was expressed as a percentage of R0.     

Inbreeding,kin selection,and primate social evolution

In this paper I argue (a) that the study of kin selection may be facilitated by looking for influences of inbreeding, which is an important aspect of a population's genetic structure; (b) that in nonhuman primates the level of inbreeding will be largely a function of the rate of migration by individuals, usually only of one sex, between social units or troops; (c) that many primate species live in relatively outbred groups, and that their social structure reflects this; and (d) that extensive social contrasts between bonnet and pigtail macaques reflect evolution by kin selection under different levels of inbreeding.     

The distribution and metabolism of glycerol in the rabbit.

1. The effective volume of distribution of labelled glycerol was studied in conscious young adult rabbits provided with in-dwelling cannulae in the femoral blood vessels. This could be estimated after sampling arterial blood throughout an intravenous infusion of [2-3H]glycerol. The volume was calculated by using an algebraic method of graphical area analysis over 100 min of equilibration, and is symbolized 100V e or 100V e%. It occupied 34.1 +/- 2.2% (mean +/- S.E.M.; n = 13) of the body weight. The pool of endogenous glycerol occupying this space is distinguished in the present paper by calling it the transit pool, symbolized 100Me. 2. The median time of transit of glycerol through this pool was approx. 6 min in these conscious rabbits with normal (less than 0.2 mM) blood glycerol concentrations. 3. The metabolism of glycerol was also studied in rabbits while anaesthetized with urethane or while conscious. On average, half of the change in glycerol concentration that occurred on overnight starvation could be attributed to a decrease in clearance, whereas half was due to an increase in lipolysis. 4. The correlation between the reciprocal of glycerol concentration and clearance showed that in these animals about a quarter of the variation in concentration was due to an association with clearance. The remainder of the variation was attributed to variations in the rate of glycerol formation (lipolysis). 5. The regression of glycerol turnover rate on concentration implied that turnover was positive at zero glycerol concentration. This confirms previous findings from studies on other species. The explanation offered for this phenomenon is that the well-known physiological changes induced by feeding (decreased lipolysis, increased splanchnic blood flow) may independently decrease the glycerol concentration by both decreasing its release into the blood and simultaneously increasing its clearance.     

The role of adenosine 3',5'-cyclic monophosphate in the density-dependent regulation of growth and tyrosinase activity of B-16 melanoma cells.

Incubation of cultured B-16 melanoma cells with 1-methyl-3-isobutyl xanthine (MIX) produced a sustained rise in intracellular adenosine 3',5'-cyclic monophosphate (cAMP) which preceded an increase in the specific activity of tyrosinase (EC 1.10.3.1). Cultures of two clones of melanoma cells, one having a mean population doubling time twice that of the other, showed density-dependent inhibition of growth. The tyrosinase activity of each line increased progressively during logarithmic growth, reaching maximal values shortly after the cultures achieved confluence. Intracellular cAMP levels fell during logarithmic growth, being minimal in confluent cultures. The stimulatory effects of MIX and confluence on tyrosinase activity were additive. Cells plated at high density had a lower tyrosinase activity than cells allowed to achieve a similar density by successive division from sparsely planted cultures although the intracellular cAMP levels of such cultures were not different. We support the observations of other investigators that agents which increase intracellular cAMP concentrations can both inhibit cell division and stimulate tyrosinase activity. There are, however, mechanisms for increasing tyrosinase activity and inhibiting cell division which are expressed as B-16 melanoma cells approach confluence and which are not mediated by an increase in intracellular cAMP concentrations.     

The distribution of dissolved DNA in an oligotrophic and a eutrophic river of Southwest Florida

The distribution of dissolved DNA concentrations and some microbial variables were compared in an oligo-mesotrophic river (the Crystal River) and a phosphate-rich eutrophic river (the Alafia River) in Southwest Florida over a 15 month period. Concentrations of phosphate and nitrate in the Alafia River averaged 135 and 18.2 times the respective phosphate and nitrate concentrations of the oligo-mesotrophic Crystal River. The seasonal average dissolved DNA concentration for the Alafia River exceeded that of the Crystal River by a factor of 1.8 (8.2 g 1^–1 compared to 4.6 g 1^–1, respectively). The greatest concentrations of dissolved DNA in the Alafia River were found in areas that contained the largest populations of phytoplankton and bacteria (a reservoir formed from an abandoned phosphate mining pit and two downstream stations near the mouth of the river). Differences in dissolved DNA concentrations between these environments and more pristine environments (i.e. all Crystal River Stations and upstream Alafia River stations) were of the same order of magnitude (1.8 to 2.2-fold) as the differences in bacterial abundance and activity, but considerably less than differences in phytoplankton abundance and activity between such environments. Seasonal variations in dissolved DNA concentrations in the Crystal River corresponded to seasonal variations in microbial populations, with minimal values in January and greater values in July. In the Alafia River, lowest concentrations for dissolved DNA occurred in July during the wet season, when seasonal flooding of area of leaf litter yielded high levels of dissolved organic carbon (DOC) which were low in dissolved DNA. These results suggest that: 1) in situ planktonic activity is a greater source of dissolved DNA than allochthonous or terrestrial sources of DOC; 2) factors that control the magnitude of heterotrophic bacterial populations are more likely to control dissolved DNA levels than factors regulating autotrophic population activity and abundance; 3) differences in dissolved DNA between eutrophic and oligo-mesotrophic environments are often much smaller than the differences in nutrient concentration between such environments.     

Influence of site-directed modifications on the formation of iron cores in ferritin

The structure and crystal chemical properties of iron cores of reconstituted recombinant human ferritins and their site-directed variants have been studied by transmission electron microscopy and electron diffraction. The kinetics of Fe uptake have been compared spectrophotometrically. Recombinant L and H-chain ferritins, and recombinant H-chain variants incorporating modifications in the threefold (Asp131----His or Glu134----Ala) and fourfold (Leu169----Arg) channels, at the partially buried ferroxidase sites (Glu62,His65----Lys,Gly), a putative nucleation site on the inner surface (Glu61,Glu64,Glu67----Ala), and both the ferroxidase and nucleation sites (Glu62,His65----Lys,Gly and Glu61,Glu64,Glu67----Ala), were investigated. An additional H-chain variant, incorporating substitution of the last ten C-terminal residues for those of the L-chain protein, was also studied. Most of the proteins assimilated iron to give discrete electron-dense cores of the Fe(III) hydrated oxide, ferrihydrite (Fe2O3.nH2O). No differences were observed for variants modified in the three- or fourfold channels compared with the unmodified H-chain ferritin. The recombinant L-chain ferritin and H-chain variant depleted of the ferroxidase site, however, showed markedly reduced uptake kinetics and comprised cores of increased diameter and regularity. Depletion of the inner surface Glu residues, whilst maintaining the ferroxidase site, resulted in a partially reduced rate of Fe uptake and iron cores of wider particle size distribution. Modification of both ferroxidase and inner surface Glu residues resulted in complete inhibition of iron uptake and deposition. No cores were observed by electron microscopy although negative staining showed that the protein shell was intact. The general requirement of an appropriate spatial charge density across the cavity surface rather than specific amino acid residues could explain how, in spite of an almost complete lack of identity between the amino acid sequences of bacterioferritin and mammalian ferritins, ferrihydrite is deposited within the cavity of both proteins under similar reconstitution conditions.     

A molecular dynamics study of thermodynamic and structural aspects of the hydration of cavities in proteins.

The structure and activity of a protein molecule are strongly influenced by the extent of hydration of its cavities. This is, in turn, related to the free energy change on transfer of a water molecule from bulk solvent into a cavity. Such free energy changes have been calculated for two cavities in a sulfate-binding protein. One of these cavities contains a crystallographically observed water molecule while the other does not. Thermodynamic integration and perturbation methods were used to calculate free energies of hydration for each of the cavities from molecular dynamics simulations of two separate events: the removal of a water molecule from pure water, and the introduction of a water molecule into each protein cavity. From the simulations for the pure water system, the excess chemical potential of water was computed to be -6.4 +/- 0.4 kcal/mol, in accord with experiment and with other recent theoretical calculations. For the protein cavity containing an experimentally observed water molecule, the free energy change on hydrating it with one water molecule was calculated as -10.0 +/- 1.3 kcal/mol, indicating the high probability that this cavity is occupied by a water molecule. By contrast, for the cavity in which no water molecules were experimentally observed, the free energy change on hydrating it with one water molecule was calculated as 0.2 +/- 1.5 kcal/mol, indicating its low occupancy by water. The agreement of these results with experiment suggests that thermodynamic simulation methods may become useful for the prediction and analysis of internal hydration in proteins.     

GENOTYPE-ENVIRONMENT INTERACTION FOR CLIMATE AND COMPETITION IN A NATURAL POPULATION OF FLOUR BEETLES,TRIBOLIUM CASTANEUM

The norm of reaction, the set of average phenotypes produced by a genotype in different environments, can be affected by spatial variation in natural selection especially when there exists genotype-environment interaction. In subdivided populations, the greater the genotype-environment interaction variance and the lower the migration rate, the more independent are the possible evolutionary trajectories for local adaptation. I examined genotype-environment interaction in the rate of population increase for lineages randomly derived from a wild population of Tribolium castaneum across a series of ecologically important environments. The lineages were derived from an outbred, wild-caught population by 14 generations of random genetic drift, during which the effective size of each lineage was approximately 22 breeding adults. The environments studied were the classic temperate-wet and cold-dry climates of Park (1954) in factorial combination with two genetic strains of a congeneric competitor, T. confusum. Much among-lineage genetic variation for rate of population increase was found for each of these ecologically important environments of climate and competition. Genotype-environment interaction accounted for 40.5% of the total among-lineage variance in rate of population increase signifying that the performance of a lineage in one environment is not necessarily a good predictor of its performance in another. Changing the genetic identity of the competitor changed the rate of increase of some lineages as much or more than changing the climatic conditions of temperature and humidity. This is the first empirical study to characterize the genotype-environment interaction variance associated with genetic variation in a competing congeneric species. This competitor-specific genetic variation in competitive ability may play an important role in coevolution in subdivided populations.