New observations on the splenius capitis and rectus capitis ventralis muscles of the Common Swift Apus apus (Apodidae)

In swifts and hummingbirds (Apodiformes), the splenius capitis muscle displays a characteristic modification, the 'cruciform origin'. The muscle pairs arise from the second vertebra by several slips which criss-cross and interdigitate with each other, before inserting into the skull. In the course of a study on the neck muscles of the Common Swift, we paid special attention to the arrangement of these slips of the splenius capitis muscle, and noted a previously unrecognized individual modification of this muscle. In addition, we observed an incipient cruciform origin of the deep portion (slip) of the rectus capitis ventralis muscle that has not been noticed for swifts or any other avian taxon before. The development and function of these modifications of the splenius capitis and rectus capitis ventralis muscle are discussed.     

Landscape genetics of California mule deer (Odocoileus hemionus): the roles of ecological and historical factors in generating differentiation

Landscape genetics is an emerging discipline that utilizes environmental and historical data to understand geographic patterns of genetic diversity. Niche modelling has added a new dimension to such efforts by allowing species–environmental associations to be projected into the past so that hypotheses about historical vicariance can be generated and tested independently with genetic data. However, previous approaches have primarily utilized DNA sequence data to test inferences about historical isolation and may have missed very recent episodes of environmentally mediated divergence. We type 15 microsatellite loci in California mule deer and identify five genetic groupings through a Structure analysis that are also well predicted by environmental data. We project the niches of these five deer ecotypes to the last glacial maximum (LGM) and show they overlap to a much greater extent than today, suggesting that vicariance associated with the LGM cannot explain the present-day genetic patterns. Further, we analyse mitochondrial DNA (mtDNA) sequence trees to search for evidence of historical vicariance and find only two well-supported clades. A coalescence-based analysis of mtDNA data shows that the genetic divergence of the mule deer genetic clusters in California is recent and appears to be mediated by ecological factors. The importance of environmental factors in explaining the genetic diversity of California mule deer is unexpected given that they are highly mobile species and have a broad habitat distribution. Geographic differences in the timing of reproduction and peak vegetation as well as habitat choice reflecting natal origin may explain the persistence of genetic subdivision.     

Characterization of Genotypes of Enterocytozoon bieneusi in Immunosuppressed and Immunocompetent Patient Groups

ABSTRACT. A retrospective phylogenetic analysis was performed on isolates of Enterocytozoon bieneusi to characterize the genotypes in different patient cohorts. Fifty-seven isolates, collected from patients living in Malawi and the Netherlands, were classified by age and immune status of the hosts. Sequence analysis of the internal transcribed spacer (ITS) region identified 16 genotypes; nine have not previously been described. Genotypes K and D were most prevalent among patient groups, whereas genotype C was restricted to transplantation patients receiving immunosupressives and genotype B showed a predisposition toward patients living with HIV/AIDS. Different genotypes showed more dispersion among isolates from Malawi compared with those from the Netherlands. A constructed map estimating the genealogy of the ITS region reveals a dynamic evolutionary process between the genotypes.     

Phylogeographic analyses reveal distinct lineages of the liverworts Metzgeria furcata (L.) Dumort. and Metzgeria conjugata Lindb. (Metzgeriaceae) in Europe and North America

Seed plant genera often exhibit intercontinental disjunctions where different species are found on different continents. Many morphologically circumscribed bryophyte species exhibit similar disjunctions. We used nucleotide sequences from the plastid and nuclear genomes to test hypotheses of phylogeography within representatives of the genus Metzgeria: Metzgeria furcata, Metzgeria conjugata, and Metzgeria myriopoda. The first two species have sexual and asexual populations, exhibit disjunctions between North America and Europe, and have been split into separate species, numerous subspecies or varieties. The third species occurs in eastern North America but is not reported from Europe. Phylogenetic analyses resolved three distinct lineages within the morphologically defined species, M. furcata: one in North America, and two in Europe. Similarly, three morphologically cryptic clades of M. conjugata were resolved by the molecular data: northern North America, Europe, and south‐eastern North America. For both species, molecular divergence among taxa occurred in the absence of morphological change. In the case of M. myriopoda, all plants from eastern North America were both morphologically uniform and genetically homogeneous (although not identical). The present study provides significant insight into a plant group with complex taxonomy, and indicates that these liverwort taxa with wide distributions, extreme sex ratios, and continental disjunctions harbor cryptic lineages. © 2009 The Linnean Society of London, Biological Journal of the Linnean Society, 2009, 98 , 745–756.     

Robust dynamics of Amazon dieback to climate change with perturbed ecosystem model parameters

Climate change science is increasingly concerned with methods for managing and integrating sources of uncertainty from emission storylines, climate model projections, and ecosystem model parameterizations. In tropical ecosystems, regional climate projections and modeled ecosystem responses vary greatly, leading to a significant source of uncertainty in global biogeochemical accounting and possible future climate feedbacks. Here, we combine an ensemble of IPCC‐AR4 climate change projections for the Amazon Basin (eight general circulation models) with alternative ecosystem parameter sets for the dynamic global vegetation model, LPJmL. We evaluate LPJmL simulations of carbon stocks and fluxes against flux tower and aboveground biomass datasets for individual sites and the entire basin. Variability in LPJmL model sensitivity to future climate change is primarily related to light and water limitations through biochemical and water‐balance‐related parameters. Temperature‐dependent parameters related to plant respiration and photosynthesis appear to be less important than vegetation dynamics (and their parameters) for determining the magnitude of ecosystem response to climate change. Variance partitioning approaches reveal that relationships between uncertainty from ecosystem dynamics and climate projections are dependent on geographic location and the targeted ecosystem process. Parameter uncertainty from the LPJmL model does not affect the trajectory of ecosystem response for a given climate change scenario and the primary source of uncertainty for Amazon ‘dieback’ results from the uncertainty among climate projections. Our approach for describing uncertainty is applicable for informing and prioritizing policy options related to mitigation and adaptation where long‐term investments are required.     

Mechanisms of species‐sorting: effect of habitat occupancy on aphids' host plant selection

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Palaeoctopus pelagicus from the Turonian of Mexico reinterpreted as a coelacanth (Sarcopterygian) gular plate

Abstract: The supposed vestige of a cephalopod gladius from Turonian platy limestones at Vallecillo, north‐east Mexico, named Palaeoctopus pelagicus by Fuchs et al. in 2008, is reinterpreted and shown to be a gular plate of a coelacanth fish, possibly of the genus Megacoelacanthus. In addition to the gular plate, two extrascapulars and fin rays of all fins are preserved on one slab and its counterpart. This is the first record of a coelacanth from these lower Turonian strata at Vallecillo, which are rich in fish.     

Microsatellite markers isolated from saltgrass (Distichlis spicata)

Twelve polymorphic microsatellite DNA loci were isolated from saltgrass (Distichlis spicata) and optimized for future studies of its breeding system. The loci were screened for variability among 24 individuals from two populations. The primers amplified loci with numbers of alleles ranging from four to 14 per locus and polymorphic information content from 0.481 to 0.951. Observed heterozygosity varied from 0.227 to 0.958.     

Ecological adaptations of grassland‐inhabiting flightless Orthoptera: Fulvoscirtes and Acanthoscirtes,two new genera of African Karniellina (Orthoptera,Tettigoniidae, Conocephalinae,Conocephalini)

Two new genera, Fulvoscirtes n.gen. and Acanthoscirtes n.gen. , are established within the subtribe Karniellina of Conocephalini. Fulvoscirtes is based on Xiphidion kilimandjaricum Sjöstedt, 1909 and Acanthoscirtes on Phlesirtes kevani Chopard from northern Kenya. The majority of Fulvoscirtes spp. are confined to open grasslands in the submontane zone of mountains. Fulvoscirtes contains eight species, seven of which are newly described in this paper. Three species and one subspecies occur on Mt Kilimanjaro. These are F. kilimandjaricum (Sjöstedt) constricted to the southern slopes, F. legumishera n.sp. confined to the northern side and F. sylvaticus n.sp. occurring on the western side of Kilimanjaro and on the eastern slopes of Mt Meru. Fulvoscirtes fulvus n.sp. is divided into two subspecies, F. fulvus fulvus n.ssp. found in the submontane zone of east Kilimanjaro and F. fulvus parensis n.ssp. in submontane to montane localities of the North and South Pare mountains. Fulvoscirtes fulvotaitensis n.sp. occurs in the Taita Hills of southern Kenya. Fulvoscirtes viridis n.sp. is described from savannah habitats between Mts Longido and Meru. Fulvoscirtes laticercus n.sp. is found in the Kenyan highlands, while the most southerly occurring species, Fulvoscirtes manyara n.sp. , is found on Mt Hanang and the Mbulu highlands of northwestern Tanzania. Acanthoscirtes contains three species, of which A. albostriatus n.sp. is described newly from savannah habitas of eastern Kilimanjaro. Information is given on the ecology and the acoustic behaviour of some of the species together with keys to the genera of the Karniellina and the species of Fulvoscirtes and Acanthoscirtes. The genera of Karniellina probably evolved at a time when grasslands spread in East Africa due to an increasing aridification of the climate. The earliest lineage, the genus Karniella, is adapted to more forested habitats while the majority of the genera of Karniellina prefer open grasslands. Major splits within Karniellina probably occurred with the emergence of savannah grasslands due to the ongoing fragmentation of forest habitats several millions years ago, but most species within the genera are geologically young, their radiation being boosted by climatic fluctuations of the past 1–2 Ma.