Colchicine-binding Proteins in Chromatin and Membranes

THE cytoplasm of several cell types contains a protein which is characterized by its specific capability to bind colchicine^1–4 and which may be in dynamic equilibria between monomers and a distinct form of polymer structure, the microtubules. Studies of the character of this protein have hitherto usually proceeded from the cellular homogenate to the 100,000g supernatant which, at least in brain tissue, provides the largest enrichment and recovery. Two lines of observations prompted us to examine the possibility that colchicine-binding proteins exist in association with structures other than microtubules. First, considerable amounts of colchicine-binding protein are recovered in the 100,000g sediments. This is especially noticeable with mammalian liver but has also been noted during vertebrate brain fractionation^4–7. Second, certain structures exhibit frequent and conspicuous associations with microtubules, in particular membranes^8,9 and chromosomal structures. Membrane preparations too have been reported to share some protein properties in common with tubulin^10,11.     

Endogenous pararetroviruses of allotetraploid Nicotiana tabacum and its diploid progenitors, N. sylvestris and N. tomentosiformis

Endogenous pararetroviruses (EPRVs) represent a new class of dispersed repetitive DNA in plants. The genomes of many Nicotiana species and other solanaceous plants are rich in EPRVs. Distinct EPRV families are present in N. sylvestris ( Ns ) and in N. tomentosiformis ( Nto ), the two diploid progenitors of allotetraploid N. tabacum . Nicotiana EPRVs represent an interesting type of repetitive sequence to analyse in polyploids because of their potential impact on plant fitness and the epigenetic architecture of plant genomes. The Ns EPRV family appears identical in N. sylvestris and N. tabacum , indicating little change has occurred in either species since polyploid formation. By contrast, the Nto EPRV family is larger in N. tomentosiformis than in N. tabacum , suggesting either preferential elimination from the polyploid genome or specific accumulation in the diploid genome following polyploidization. The lability of Nto EPRVs might be enhanced by a frequent association with gypsy retrotransposons. Although some EPRVs are probably benign, others are potentially pathogenic or, conversely, determinants of virus resistance. Normally quiescent EPRVs can be reactivated and cause symptoms of infection in hybrids of species that differ in their EPRV content. EPRVs that furnish immunity to the free virus exemplify the selective value of so-called 'junk' DNA. Variation in the abundance and distribution of EPRVs among related species can be useful in taxonomic and evolutionary studies.  © 2004 The Linnean Society of London, Biological Journal of the Linnean Society , 2004, 82 , 627–638.     

The Quilon Limestone,Kerala Basin,India: an archive for Miocene Indo‐Pacific seagrass beds

Reuter, M., Piller, W.E., Harzhauser, M., Kroh, A., Rögl, F. & ?ori?, S. 2010: The Quilon Limestone, Kerala Basin, India: an archive for Miocene Indo‐Pacific seagrass beds. Lethaia, Vol. 44, pp. 76–86. The facies of the fossiliferous Quilon Limestone in SW India is described for the first time in detail at the Padappakkara‐type locality. Facies (fossiliferous, micrite‐rich, bioturbated sediment with intercalated sand pockets) and faunal composition (epiphytic foraminifers, seagrass feeding Smaragdia gastropods, bioimmuration of celleporiform bryozoan colonies) indicate a seagrass environment. The large discoidal archaiasin foraminifer Pseudotaberina malabarica, in particular, is considered as a proxy for seagrass communities. Recent seagrasses have their centre of generic richness in the Indo‐Pacific where they cover wide areas in the tidal and shallow sub‐tidal zones. However, their geological record is only fragmentary and their palaeobiogeographic distribution has a big stratigraphical gap in the Miocene Western Indo‐Pacific region. The described nannoplankton flora and planktonic foraminifers from the Quilon Formation demonstrate that the deposition of the studied seagrass bed occurred in nannoplankton biozone NN3. This timing suggests formation during the closure of the Tethyan Seaway. The Quilon Limestone is thus an early Western Indo‐Pacific seagrass bed and an important step in reconstructing the history of seagrass communities. □Quilon Formation, Pseudotaberina malabarica, seagrass facies, Burdigalian, Indo‐Pacific.     

Species-Specific Aggregation Factor in Sponges

An aggregation factor (AF) from the siliceous sponge Suberites domuncula has been isolated and purified by the following steps: Sepharose 2 B gel chromatography, sucrose gradient, Nonidet treatment, Sephadex G-100 gel chromatography and DEAE-Sephadex ion-exchange chromatography. By this procedure the AF was purified 1340-fold with a 63% yield nearly to homogeneity. The AF is originally associated with large particles, characterized by a sedimentation of 2200 S. These particles have been visualized electron microscopically; they are characterized by a filament-like shape of a length of 3400 Å and a cross-sectional diameter of 230 Å.
The purified, low-molecular weight AF has a buoyant density of 1.38 g/cm³ and an absorbance maximum at 282 nm. The isoelectric pH is approximately 5.75. The molecular weight of the AF has been determined to be 55,000. Chemical analysis revealed that AF consists mainly of protein.
The reaggregation process of Suberites cells to large aggregates (>1000 μm), mediated by Suberites AF, is strongly dependent on pH, ionic strength and the presence of calcium ions, and independent of incubation temperature between 0°C and 20°C. Aggregation can be inhibited by trypsin, D-glucosamine and dodecyl sulphate.
The Suberites AF is species-specific if tested in a system containing cells from the siliceous sponge Geodia cydonium .     

The feasibility of producing inbred rather than F1 hybrid cultivars in Brussels sprouts (Brassica oleracea var. gemmifera): an assessment of recombinant inbred lines

Results are presented for the performance of improved inbred lines of Brussels sprouts grown in replicated and fully guarded plots. Some lines were identified which out-performed the reference F₁ hybrid, Gower, for the yield of marketable sprouts and for sprout quality. No lines were found which were superior for both of these traits. These results support earlier contentions that inbred line performance in Brussels sprouts could be improved to levels comparable with those of commercial F₁ hybrids. The genetic gains required to achieve commercial parity with hybrids for all agronomically important traits continue to be large. Therefore, the use of inbred lines as commercial cultivars can only be viewed as a long term objective. Previous studies have identified additive x additive epistasis and the segregation of many loci as important factors limiting the genetic gains to be expected from a single cycle of crossing and inbreeding. In addition to these factors the current study identifies areas of difficulty encountered when attempting to screen and select large numbers of inbred lines, produced either by single seed descent or by anther culture, in a single season. Evidence is presented which suggests that imperfect visual selection and/or genotype × seasonal interactions may substantially reduce the efficiency of selections based upon a single trial of very many unreplicated lines.     

Morphological, functional and evolutionary aspects of tail autotomy and regeneration in the 'living fossil'Sphenodon (Reptilia: Rhynchocephalia)

Tail autotomy and regeneration are less known in Sphenodon ('Reptilia': Rhynchocephalia) than in Squamata. We examined museum specimens, Sphenodon guntheri ( N  = 8) and Sphenodon punctatus ( N  = 172), wild Sphenodon punctatus ( N  = 19) and Sphenodon sp. skeletons ( N  = 8). In S. punctatus , unlike in typical Squamata, sexes had similar relative (intact) tail lengths, and regeneration frequencies; tail and body growth was isometric. Tail breakage was usually intravertebral, usually followed by ablation of a variably sized terminal vertebral piece, partly deviating from lizards. Hypothetically, imperfect autotomy results from sphenodon's primitiveness. As in squamates, tail-losers were morphologically more left-side dominant than tail-retainers. Individual directional asymmetries in digit morphology and in digit injury were correlated (in lizards observed only at population level); tail-losers had more fluctuating asymmetry but their exclusion did not facilitate morphological taxonomic distinctions (no 'Seligmann effect'). In S. punctatus , extents and directions of sexual dimorphism paralleled differences between tail-retainers and tail-losers, females resembling tail-losers, also accounting for character interdependence (developmental constraints; employing a method similar to phylogenetic contrasts). The variation in the location of tail injury was correlated with the continuum of variation between injured and intact (pholidotic) morphotypes. These last two phenomena remain to be explored in Squamates.  © 2008 The Linnean Society of London, Biological Journal of the Linnean Society , 2008, 93 , 721–743.     

Dynamics in a butterfly–plant–ant system: influence of habitat characteristics on turnover rates of the endangered lycaenid Maculinea alcon

Abstract.  1.  Maculinea alcon , a myrmecophilic, stenotopic lycaenid butterfly is restricted to wet heathlands, bogs, and nutrient-poor hay meadows. Due to intensification of agriculture and decrease of extensively grazed meadows, many suitable habitats have disappeared and the remaining ones are highly fragmented and deteriorated.
2. Historical distribution data and a comparison with the present occupation of patches show the decline of this critically endangered butterfly in north-west Germany. Most of the populations in north-west Germany are small and often geographically isolated.
3. In summer 2002, two-thirds of 77 investigated potential patches were unoccupied as a result of unsuitable habitat structure and habitat fragmentation.
4. Several habitat parameters were highly significantly correlated with the presence of M. alcon , in particular the distribution pattern of the host plant Gentiana pneumonanthe. Furthermore, butterflies were absent from many patches with an incidence probability below 50% with respect to patch size and isolation.
5. In the nature reserve Lüneburger Heide, part of the study area, M. alcon populations have been observed since 1995. Typical turnover of local populations could be detected during these years. Extinctions and re-colonisations have stabilised the presence of this species in a metapopulation in this nature reserve.
6. These data show the importance of different factors on different spatial levels influencing the presence of this endangered butterfly.