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971.
Pena V Hothorn M Eberth A Kaschau N Parret A Gremer L Bonneau F Ahmadian MR Scheffzek K 《EMBO reports》2008,9(4):350-355
The brain-specific synaptic guanosine triphosphatase (GTPase)-activating protein (SynGAP) is important in synaptic plasticity. It shows dual specificity for the small guanine nucleotide-binding proteins Rap and Ras. Here, we show that RapGAP activity of SynGAP requires its C2 domain. In contrast to the isolated GAP domain, which does not show any detectable RapGAP activity, a fragment comprising the C2 and GAP domains (C2-GAP) stimulates the intrinsic GTPase reaction of Rap by approximately 1 x 10(4). The C2-GAP crystal structure, complemented by modelling and biochemical analyses, favours a concerted movement of the C2 domain towards the switch II region of Rap to assist in GTPase stimulation. Our data support a catalytic mechanism similar to that of canonical RasGAPs and distinct from the canonical RapGAPs. SynGAP presents the first example, to our knowledge, of a GAP that uses a second domain for catalytic activity, thus pointing to a new function of C2 domains. 相似文献
972.
Vladimir Paar Nenad Pavin Ivan Basar Marija Rosandić Matko Glunčić Nils Paar 《BMC bioinformatics》2008,9(1):466
Background
Identification of approximate tandem repeats is an important task of broad significance and still remains a challenging problem of computational genomics. Often there is no single best approach to periodicity detection and a combination of different methods may improve the prediction accuracy. Discrete Fourier transform (DFT) has been extensively used to study primary periodicities in DNA sequences. Here we investigate the application of DFT method to identify and study alphoid higher order repeats. 相似文献973.
974.
Sunil Sagar Mandeep Kaur Adam Dawe Sundararajan Vijayaraghava Seshadri Alan Christoffels Ulf Schaefer Aleksandar Radovanovic Vladimir B Bajic 《BMC genomics》2008,9(1):1-7
Background
Hepcidin/LEAP-1 is an iron regulatory hormone originally identified as an antimicrobial peptide. As part of a systematic analysis of the evolution of host defense peptides in primates, we have sequenced the orthologous gene from 14 species of non-human primates.Results
The sequence of the mature peptide is highly conserved amongst all the analyzed species, being identical to the human one in great apes and gibbons, with a single residue conservative variation in Old-World monkeys and with few substitutions in New-World monkeys.Conclusion
Our analysis indicates that hepcidin's role as a regulatory hormone, which involves interaction with a conserved receptor (ferroportin), may result in conservation over most of its sequence, with the exception of the stretch between residues 15 and 18, which in New-World monkeys (as well as in other mammals) shows a significant variation, possibly indicating that this structural region is involved in other functions. 相似文献975.
976.
Co-expression and promoter content analyses assign a role in biotic and abiotic stress responses to plant natriuretic peptides 总被引:1,自引:0,他引:1
Stuart Meier René Bastian Lara Donaldson Shane Murray Vladimir Bajic Chris Gehring 《BMC plant biology》2008,8(1):24
Background
Plant natriuretic peptides (PNPs) are a class of systemically mobile molecules distantly related to expansins. While several physiological responses to PNPs have been reported, their biological role has remained elusive. Here we use a combination of expression correlation analysis, meta-analysis of gene expression profiles in response to specific stimuli and in selected mutants, and promoter content analysis to infer the biological role of the Arabidopsis thaliana PNP, AtPNP-A. 相似文献977.
Zinchenko AA Baigl D Chen N Pyshkina O Endo K Sergeyev VG Yoshikawa K 《Biomacromolecules》2008,9(7):1981-1987
The conformational behavior of a long single-chain double-stranded DNA in solutions of free silver ions and silver nanoparticles generated via the reduction of AgNO3 by NaBH4 was monitored by fluorescence and electron microscopies and UV spectroscopy. The interaction of monovalent silver ions with DNA induces shrinking of a DNA-coiled polymer chain as a result of a decrease in the DNA persistence length through the complexation of Ag+ with DNA bases. In contrast, the reduction of silver ions by NaBH4 in DNA solutions triggers DNA compaction: a DNA transition from elongated coil state into a compact state. This transition is continuous, unlike the all-or-none discrete DNA compaction that is commonly seen with multications. It is suggested that the collapse of DNA is accompanied by growth aggregation of silver nanoparticles generated on the DNA template. 相似文献
978.
Frederick D Lewis Huihe Zhu Pierre Daublain Karsten Sigmund Torsten Fiebig Milen Raytchev Qiang Wang Vladimir Shafirovich 《Photochemical & photobiological sciences》2008,7(5):534-539
The mechanism and dynamics of charge separation and charge recombination in synthetic DNA hairpins possessing a stilbenedicarboxamide linker and a single guanine-cytosine base pair have been reinvestigated. The combination of femtosecond broad-band pump probe spectroscopy, nanosecond transient absorption experiments, and picosecond fluorescence decay measurements permits analysis of the formation and decay of the stilbene anion radical. Reversible hole injection resulting in the formation of the stilbene-adenine contact radical ion pair is found to occur on the picosecond time scale. The mechanism for charge separation across two or more base pairs is revised from single step superexchange to a multi-step process: hole injection followed by hole transport and hole trapping. The mechanism of charge recombination remains assigned to a superexchange process. 相似文献
979.
980.
Pravosudov VV 《Proceedings. Biological sciences / The Royal Society》2008,275(1630):55-61
Evolution of complex cognition in animals has been linked to complex social behaviour. One of the costs of sociality is increased competition for food which may be reduced by food caching, but cache theft may undermine the benefits of caching. In birds, sophisticated food-caching-related cognition has been demonstrated only for corvids and attributed to their highly social behaviour. Many non-corvid food-caching species exhibit similar complex social behaviour and here I provide experimental evidence that mountain chickadees (Poecile gambeli) adjust their caching strategies depending on social context. Chickadees were allowed to cache seeds in the presence of potential cache pilferer, either conspecific or heterospecific (red-breasted nuthatch, Sitta canadensis) and a non-pilferer (dark-eyed junco, Junco hyemalis) positioned at the opposite sides of the experimental arena. Available caching sites were either exposed to these observers or hidden from their view while the cacher could always see both observers. Chickadees chose caching sites that were hidden from direct view of the potential pilferers while caching in direct view of the non-pilferers. When no pilferers were present, chickadees made equal use of all available caching substrates and there were no differences in the amount of caching in the presence or absence of pilferers. These results suggest that (i) chickadees may be able to recognize potential cache thieves, both conspecific and heterospecific, and adjust their caching strategies to minimize potential cache pilferage and (ii) chickadees appear to discriminate between caching sites that can or cannot be seen by observers, which may allow them to control visual information available to potential pilferers. 相似文献