A PCA-based modelling technique for predicting environmental suitability for organisms from presence records

We present a correlative modelling technique that uses locality records (associated with species presence) and a set of predictor variables to produce a statistically justifiable probability response surface for a target species. The probability response surface indicates the suitability of each grid cell in a map for the target species in terms of the suite of predictor variables. The technique constructs a hyperspace for the target species using principal component axes derived from a principal components analysis performed on a training dataset. The training dataset comprises the values of the predictor variables associated with the localities where the species has been recorded as present. The origin of this hyperspace is taken to characterize the centre of the niche of the organism. All the localities (grid-cells) in the map region are then fitted into this hyperspace using the values of the predictor variables at these localities (the prediction dataset). The Euclidean distance from any locality to the origin of the hyperspace gives a measure of the 'centrality' of that locality in the hyperspace. These distances are used to derive probability values for each grid cell in the map region. The modelling technique was applied to bioclimatic data to predict bioclimatic suitability for three alien invasive plant species ( Lantana camara L., Ricinus communis L. and Solanum mauritianum Scop.) in South Africa, Lesotho and Swaziland. The models were tested against independent test records by calculating area under the curve (AUC) values of receiver operator characteristic (ROC) curves and kappa statistics. There was good agreement between the models and the independent test records. The pre-processing of climatic variable data to reduce the deleterious effects of multicollinearity, and the use of stopping rules to prevent overfitting of the models are important aspects of the modelling process.     

Diversity of H2/CO2-Utilizing Acetogenic Bacteria from Fecesof Non-Methane-Producing Humans

The purpose of this work was to study H₂/CO₂-utilizing acetogenic population in the colons of non-methane-producing individuals harboring low numbers of methanogenic archaea. Among the 50 H₂-consuming acetogenic strains isolated from four fecal samples and an in vitro semi-continuous culture enrichment, with H₂/CO₂ as sole energy source, 20 were chosen for further studies. All isolates were Gram-positive strict anaerobes. Different morphological types were identified, providing evidence of generic diversity. All acetogenic strains characterized used H₂/CO₂ to form acetate as the sole metabolite, following the stoichiometric equation of reductive acetogenesis. These bacteria were also able to use a variety of organic compounds for growth. The major end product of glucose fermentation was acetate, except for strains of cocci that mainly produced lactate. Yeast extract was not necessary, but was stimulatory for growth and acetogenesis from H₂/CO₂. Received: 28 December 1995 / Accepted: 30 January 1996     

Enzymes of arginine utilization and their formation in Aeromonas formicans NCIB 9232

In Aeromonas formicans two inducible catabolic pathways of L-arginine have been characterized. The arginine decarboxylase is induced by arginine which also induces the three enzymes of the arginine deiminase pathway but only in stress conditions such as a shift from aerobic growth conditions to very low oxygen tension. Addition of glucose to medium containing arginine leads to repression of the enzymes involved in the arginine deiminase pathway while exogenous cAMP prevents that repression of enzyme synthesis by glucose. This suggests that the induction of arginine deiminase pathway is regulated by carbon catabolite repression and the energetic state of the cell.     

Oligosaccharide structural specificity of the soluble agglutinin released from guinea pig colonic epithelial cells

Abstract Guinea pig colonic epithelial cells release a soluble lectin capable of agglutinating numerous strains of Shigella and Escherichia coli as well as other bacteria. Using pure oligosaccharides and glycopeptides with well-defined structures to inhibit the agglutination of Shigella flexneri 1b by the soluble intestinal lectin, we have been able to demonstrate that the latter recognises different structural types. Inhibition by human milk glucoprotein glycopeptides with biantennary glycans of the N -acetyllactosamine type was dependent on the simultaneous presence of unsubstituted terminal non-reducing galactose residues and of a fucose residue α-1,6-linked to the asparagine-conjugated N -acetylglucosamine residue. Unsubstituted terminal non-reducing galactose was also determinant for inhibition by human milk oligosaccharides. Finally oligosaccharides possessing the Man (α1–2) Man structure inhibited more effectively than those with a Man(α1–3)Man sequence. The fact that these different structural motifs were all inhibitory raises the problem of the possible existence of a multispecific lectin or of several different lectins in the guinea pig colonic mucosa mediating bacterial adherence.     

The acylphosphate present in chromaffin granule membrane preparations is not associated with the proton-pump

Chromaffin granule membranes were incubated in the presence of low ATP concentrations, at low temperature. A phosphorylated compound was rapidly formed which was stable in 10% trichloroacetic acid at 0 degree C. The lability of this compound in the presence of hydroxylamine or hot trichloroacetic acid indicated an acylphosphate, i.e., an ATPase phosphointermediate. Vanadate but not N-ethylmaleimide inhibited the formation of this derivative. Since the ATP-dependent generation of a transmembrane potential in chromaffin granule vesicles by the H+-pump was inhibited by N-ethylmaleimide but not by vanadate, the acylphosphate should not be associated with the H+-pump, i.e. ATPase I. We suggest that it is associated with ATPase II, an ATPase of unknown function present in chromaffin granule membrane preparations. This hypothesis is supported by the fact that ATPase II is vanadate sensitive and has a molecular mass of 140 kDa, properties similar to those of the phosphorylated intermediate.     

Activites proteolytiques et anti-trypsine des graines de Vigna unguiculata: Repartition et interaction

Data are given on distribution of caseolytic, BAPA-asic and anti-trypsin activities in albumins and globulins from embryos and cotyledons of Vigna seeds. Embryos are found to be richer in proteolytic enzymes than cotyledons. Trapping of anti-trypsin inhibitors solely enhances the albumin's caseolytic activities. Globulins do not show any BAPA-asic activity. The globulinic anti-trypsin inhibitors are similar on polyacrylamid gels (four fractions) whether the cotyledons or axes are used. The albuminic ones show one fraction more.     

Molecular genetics of Streptococcus thermophilus

Abstract The metabolism and genetics of Streptococcus thermophilus (presently Streptococcus salivarius ssp. thermophilus ) have only been investigated recently despite its widespread use in milk fermentation processes. The development of recombinant DNA technology has allowed impressive progress to be made in the knowledge of thermophilic dairy streptococci. In particular, it has permitted a careful analysis of phenotypically altered variants which were derived from a mother strain by plasmid or chromosomal DNA reorganization. While natural phage defense mechanisms of S. thermophilus remain poorly documented, information on the bacteriophages responsible for fermentation failures has accumulated. The lysogenic state of two S. thermophilus strains has also been demonstrated for the first time. Gene transfer techniques for this species have been established and improved to the point that targeted manipulation of their chromosomal determinants is now feasible. Cloning and expression vectors have been constructed, and a few heterologous genes were successfully expressed in S. thermophilus . The first homologous genes, involved in carbohydrate utilization, have been cloned and sequenced, shedding some light on the molecular organization of key metabolic steps.     

Lactate has the potential to promote hydrogen sulphide formation in the human colon

High concentrations of sulphide are toxic for the gut epithelium and may contribute to bowel disease. Lactate is a favoured cosubstrate for the sulphate-reducing colonic bacterium Desulfovibrio piger , as shown here by the stimulation of sulphide formation by D. piger DSM749 by lactate in the presence of sulphate. Sulphide formation by D. piger was also stimulated in cocultures with the lactate-producing bacterium Bifidobacterium adolescentis L2-32. Other lactate-utilizing bacteria such as the butyrate-producing species Eubacterium hallii and Anaerostipes caccae are, however, expected to be in competition with the sulphate-reducing bacteria (SRB) for the lactate formed in the human colon. Strains of E. hallii and A. caccae produced 65% and 96% less butyrate from lactate, respectively, in a coculture with D. piger DSM749 than in a pure culture. In triculture experiments involving B. adolescentis L2-32, up to 50% inhibition of butyrate formation by E. hallii and A. caccae was observed in the presence of D. piger DSM749. On the other hand, sulphide formation by D. piger was unaffected by E. hallii or A. caccae in these cocultures and tricultures. These experiments strongly suggest that lactate can stimulate sulphide formation by SRB present in the colon, with possible consequences for conditions such as colitis.