Saccharomyces capensis - an inositolless yeast

Saccharomyces capensis (N.I.U. No. 309) has been shown to have an absolute requirement for inositol and a partial requirement for biotin and pantothenate. Since the relation between growth of this yeast and concentration of inositol is nearly linear in the range of 0.18 to 1.0µg/ml of medium,S. capensis is an excellent organism to use for the bioassay of inositol.

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Zusammenfassung Saccharomyces capensis (N.I.U, no. 309) zeigte ein absolutes Erfordernis für Inositol und ein Teilerfordernis für Biotin und Pantothenate. Da die Beziehung zwischen dem Wachstum dieser Hefe und der Konzentration von Inositol beinahe linear im Bereich von 0.18 bis 1.0µg/ml des Nährbodens ist, istS. capensis ein vorzügliches Objekt für Bioassay von Inositol.

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The writers are indebted to Dr. L. R. deMiranda, Centraalbureau voor Schimmelcultures Baarn, the Netherlands for the identification of this yeast.     

Stratigraphic analysis of a fossil Neogoniolithon-capped patch reef and associated facies,San Salvador,Bahamas

An unusual Pleistocene patch reef is exposed in a coastal cliff at Grotto Beach, San Salvador, Bahamas. The reef is a coralline framestone constructed mainly by Porites astreoides together with a few large heads of Diploria strigosa and Montastrea annularis, and is capped by a dense thicket of Neogoniolithon strictum that is interpreted as marking the subtidal/intertidal boundary. The reef is flanked to the northeast by laminated to low-angle cross-laminated intraclastic grainstones and to the southwest by skeletal rudstone of reefal and interreefal derivation. Uranium-series dating of pure aragonite from a Diploria corallum yielded an age of 123 000±9000 years. Reef growth began on an erosional surface underlain by steeply crossbedded eolian grainstone. As the reef grew upward, it also grew laterally over adjacent penecontemporaneous subtidal sediments. The reef was eventually buried by 2.3 m of shallow subtidal and beach sediments that apparently prograded seaward during a highstand, or possibly while sea level was still rising. The shallow subtidal sediments are mainly peloidal, ooidal and skeletal grainstones that are pervasively bioturbated. The overlying beach facies comprises predominantly laminated, sparsely burrowed grainstone. The beach and shallow subtidal facies contain boulders of fine-grained laminated grainstone that are interpreted as storm-tossed blocks of beachrock. Living analogs of the Grotto Beach fossil reef lie off East Beach, San Salvador. Several of these have a flourishing cap of Neogoniolithon that extends above low-tide level and we believe that the Neogoniolithon cap of Grotto Beach reef did likewise. Wherever found in the stratigraphic record this facies should serve to identify the subtidal/intertidal boundary. The uppermost Pleistocene beach sediments associated with Grotto Beach fossil reef lie 5.8 m above present-day mean sea level, which ist strong evidence that this portion of San Salvador has undergone little subsidence since the Grotto Beach section was deposited.     

Substrate inactivation of enzymes in vitro and in vivo

Some enzymes are inactivated by their natural substrates during catalytic turnover, limiting the ultimate extent of reaction. These enzymes can be separated into three broad classes, depending on the mechanism of the inactivation process. The first type is enzymes which use molecular oxygen as a substrate. The second type is inactivated by hydrogen peroxide, which is present either as a substrate or a product, and are stabilized by high catalase activity. The oxidation of both types of enzymes shares common features with oxidation of other enzymes and proteins. The third type of enzyme is inactivated by non-oxidative processes, mainly reversible loss of cofactors or attached groups. Sub classes are defined within each broad classification based on kinetics and stoichiometry. Reaction-inactivation is in part a regulatory mechanism in vivo, because specific proteolytic systems give rapid turnover of such labelled enzymes. The methods for enhancing the stability of these enzymes under reaction conditions depends on the enzyme type. The kinetics of these inactivation reactions can be used to optimize bioreactor design and operation.     

Aspartate and asparagine tRNA genes in wheat mitochondrial DNA: a cautionary note on the isolation of tRNA genes from plants.

We have identified genes encoding a "native" tRNA(Asp) (trnD-GTC) and a "chloroplast-like" tRNA(Asn) (trnN-GTT) on opposite strands and 633 bp apart within a sequenced 1640 bp RsaI restriction fragment of wheat mtDNA. The trnD gene has been found previously at a different location in wheat mtDNA (P.B.M. Joyce et al. (1988) Piant Mol. Biol. 11, 833-843); the duplicate copies of this gene are identical within the coding and immediate flanking regions (9 bp downstream and at least 68 bp upstream), after which obvious sequence similarity abruptly disappears. The trnN gene is identical to its homolog in maize ctDNA; continuation of sequence similarity beyond the coding region suggests that this gene originated as promiscuous ctDNA that is now part of the wheat mitochondrial genome. In the course of this work, we have encountered some unexpected similarities between tRNA gene regions from wheat mitochondria and other sources. Detailed analysis of these similarities leads us to suggest that trnN genes reportedly from petunia nuclear DNA (N. Bawnik et al. (1983) Nucleic Acids Res. 11, 1117-1122) and lupine mtDNA (B. Karpińska and H. Augustyniak (1988) Nucleic Acids Res. 16, 6239) are, in fact, from petunia mtDNA and lupine ctDNA, respectively, whereas a putative wheat nuclear tRNA(Ser) (trnS-TGA) gene (Z. Szwekowska-Kulińska et al. (1989) Gene 77, 163-167) is actually from wheat mtDNA. In these instances, it seems probable that the DNA samples used for cloning contained trace amounts of DNA from another sub-cellular compartment, leading to the inadvertent selection of spurious clones.     

Regionally selective alterations in enzymatic activities and metabolic fluxes during thiamin deficiency

To further elucidate the molecular basis of the selective damage to various brain regions by thiamin deficiency, changes in enzymatic activities were compared to carbohydrate flux through various pathways from vulnerable (mammillary bodies and inferior colliculi) and nonvulnerable (cochlear nuclei) regions after 11 or 14 days of pyrithiamin-induced thiamin deficiency. After 11 days,large decreases (–43 to –59%) in transketolase (TK) occurred in all 3 regions; 2-ketoglutarate dehydrogenase (KGDHC) declined (–45%), but only in mammillary bodies; pyruvate dehydrogenase (PDHC) was unaffected. By day 14, TK remained reduced by 58%–66%; KGDHC was now reduced in all regions (–48 to –55%); PDHC was also reduced (–32%), but only in the mammillary bodies. Thus, the enzyme changes did not parallel the pathological vulnerability of these regions to thiamin deficiency.¹⁴CO₂ production from¹⁴C-glucose labeled in various positions was utilized to assess metabolic flux. After 14 days, CO₂ production in the vulnerable regions declined severely (–46 to 70%) and approximately twice as much as those in the cochlear nucleus. Also by day 14, the ratio of enzymatic activity to metabolic flux increased as much as 56% in the vulnerable regions, but decreased 18 to 30% in the cochlear nuclei. These differences reflect a greater decrease in flux than enzyme activities in the two vulnerable regions. Thus, selective cellular responses to thiamin deficiency can be demonstrated ex vivo, and these changes can be directly related to alterations in metabolic flux. Since they cannot be related to enzymatic alterations in the three regions, factors other than decreases in the activity of these TPP-dependent enzymes must underlie selective vulnerability in this model of thiamin deficiency.Abbreviations KGDHC 2-ketoglutarate dehydrogenase complex EC 1.2.4.2., EC 2.3.1.61, EC 1.6.4.3. - PDHC pyruvate dehydrogenase complex EC 1.2.4.2., EC 2.3.1.12, EC 1.6.4.3 - TK transketolase (EC 2.2.1.1) - TPP thiamin pyrophosphate     

Immobilization of lipase from Candida cylindraceae and its use in the synthesis of menthol esters by transesterification.

Lipase (EC 3.1.1.3) from Candida cylindraceae has been immobilized by the cellulose-titanium chloride method, and on EP-400 polyethylene, with and without glutaraldehyde crosslinking, to give active preparations when assessed by their ability to catalyse the hydrolysis of tributyrin. In both cases, the use of glutaraldehyde crosslinking was shown to improve the stability of the preparations for repeated use. The lipase immobilized on EP-400 polyethylene was found to be effective in transesterification using tributyrin or triacetin as acyl donors with l-menthol as acceptor. The production of methyl butanoate and of methyl acetate using this immobilized preparation was in each case enhanced in the presence of Amberlite IR 47 Anion exchange resin (OH form).