Biosensor analyzer for BOD index express control on the basis of the yeast microorganisms Candida maltosa, Candida blankii, and Debaryomyces hansenii

The parameters of biosensors based on the yeast strains Candida maltosa VKM Y-2359, Candida blankii VKM Y-2675, and Debaryomyces hansenii VKM Y-2482 for biochemical oxygen demand (BOD) detection are compared. The catalytic activity of the strains was analyzed in relation to the growth phase. The possibility of using D. hansenii as a basis for receptor element of a biosensor for BOD detection in municipal and biotechnological wastewaters was shown.     

Synthesis of phosphoantigens: Scalable accesses to enantiomers of BrHPP and studies on N-HDMAPP synthesis

Phosphoantigens enable the access to a new anti-tumoral and anti-infectious therapeutic pathway, based on innate immunity through the selective activation of Tγ9δ2 lymphocytes. The first proof of concept of this new immunotherapy approach was demonstrated with the synthetic phosphoantigen named bromohydrin pyrophosphate (BrHPP, IPH 1101) which was administrated in racemic form to about 200 patients in six clinical trials with good safety and promising early signals of efficacy in type C viral hepatitis and follicular non-Hodgkin's lymphoma. Enantiopure samples of BrHPP in gram scale are required for further studies on structure-bioactivity relationship. Thus we developed two complementary synthetic pathways, the first using transformation of a chiral compound and the second involving asymmetric synthesis starting from a prochiral building-block. The synthesis of a second-generation phosphoantigen, N-HDMAPP, which bears a phosphoramidate moiety, was also investigated.     

Efficient transformation of the entomopathogenic fungus Lecanicillium muscarium by electroporation of germinated conidia

All experiments on genetic modifications of Lecanicillium species performed so far used laborious PEG-mediated protoplast transformation and Agrobacterium tumefaciens-mediated transformation. In this study we demonstrated that simple and effective method of electroporation of germinated conidia can be used for transformation of this fungus. Electroporation of L. muscarium (strain VL 72) germinated conidia by the pBARGPE1 vector harboring an eGFP gene, showed a transformation efficiency 65.7 ± 1.4 phosphinothricin-resistant colonies per 2.5 μg of linearized plasmid DNA and expression of fluorescent protein without affecting fungal growth and virulence. By analysis of GFP-expressing isolates by fluorescent microscopy and immunoblotting, we found that the Aspergillus nidulans PgpdA promoter and trpC terminator in the pBARGPE1 vector provide an effective synthesis of heterologous proteins in L. muscarium cells.     

M-like,immunoglobulin-binding protein ofStreptococcus pyogenes type M15

An M-like protein fromStreptococcus pyogenes type M15 strain EF1949 (EMML15) was cloned inEscherichia coli and sequenced. Recombinant EMML15 protein revealed a unique binding pattern for human IgG subclasses not described previously. Comparative analysis of the EMML15 amino acid sequence with those of other M-like proteins of opacity factor positive (OF⁺) serotypes and protein H, an IgG receptor from OF^– serotype M1, showed that IgG-binding proteins with common binding of IgG3 were closely related and distinct from streptococcal IgG receptors not binding IgG3. Thus, the Ig-binding proteins fromS. pyogenes were subdivided into two main categories according to binding pattern, protein structure, and gene location.     

Spatial distribution and temporal dynamics of high‐elevation forest stands in southern Siberia

Aim To evaluate the hypothesis that topographic features of high‐elevation mountain environments govern spatial distribution and climate‐driven dynamics of the forest. Location Upper mountain forest stands (elevation range 1800–2600 m) in the mountains of southern Siberia. Methods Archive maps, satellite and on‐ground data from1960 to 2002 were used. Data were normalized to avoid bias caused by uneven distribution of topographic features (elevation, azimuth and slope steepness) within the analysed area. Spatial distribution of forest stands was analysed with respect to topography based on a digital elevation model (DEM). Results Spatial patterns in mountain forests are anisotropic with respect to azimuth, slope steepness and elevation. At a given elevation, the majority of forests occupied slopes with greater than mean slope values. As the elevation increased, forests shifted to steeper slopes. The orientation of forest azimuth distribution changed clockwise with increase in elevation (the total shift was 120°), indicating a combined effect of wind and water stress on the observed forest patterns. Warming caused changes in the forest distribution patterns during the last four decades. The area of closed forests increased 1.5 times, which was attributed to increased stand density and tree migration. The migration rate was 1.5 ± 0.9 m year^–1, causing a mean forest line shift of 63 ± 37 m. Along with upward migration, downward tree migration onto hill slopes was observed. Changes in tree morphology were also noted as widespread transformation of the prostrate forms of Siberian pine and larch into erect forms. Main conclusions The spatial pattern of upper mountain forests as well as the response of forests to warming strongly depends on topographic relief features (elevation, azimuth and slope steepness). With elevation increase (and thus a harsher environment) forests shifted to steep wind‐protected slopes. A considerable increase in the stand area and increased elevation of the upper forest line was observed coincident with the climate warming that was observed. Warming promotes migration of trees to areas that are less protected from winter desiccation and snow abrasion (i.e. areas with lower values of slope steepness). Climate‐induced forest response has significantly modified the spatial patterns of high‐elevation forests in southern Siberia during the last four decades, as well as tree morphology.     

Geographical variation of antler morphology of moose (Alces alces) in Russia

We attempt to identify geographical subdivisions within the range of moose according to antler size for a more correct trophy evaluation in the СIC system (The International Council for Game and Wildlife Conservation). Traditionally, this division coincides with subspecific division of trophy animal species. That is why we partially touch upon the problem of the geography of moose subspecies in Eurasia. Catalogs of hunters’ trophies that were available to us served as the research material (1,047 trophies in total). We were choosing the same measurements for moose antlers evaluated by different methods. They are overall spread, circumference of beam, width of palm, and number of tines. We applied multivariate statistic methods to the findings, enlarging the geographical division groups step by step. As a result, we suggest four geographical groups: European, Siberian, the north of the Far East, and the south of the Far East. In principle, this division corresponds to the subspecies: European (Alces alces alces L., 1758), east Siberian (A. a. pfizenmayeri Zukowsky, 1910), Chukotka or Kolyma (A. a. buturlini Chernyavski et. Zhelesnov, 1982), and Ussuri (А. а. cameloides Milne-Edwards, 1867). We consider it incorrect to draw the line between the European and Siberian groups along the river Yenisei. It is more correct to move it to the Urals.     

Circadian rhythms in zebrafish (Danio rerio) behaviour and the sources of their variability

Over recent decades, changes in zebrafish (Danio rerio) behaviour have become popular quantitative indicators in biomedical studies. The circadian rhythms of behavioural processes in zebrafish are known to enable effective utilization of energy and resources, therefore attracting interest in zebrafish as a research model. This review covers a variety of circadian behaviours in this species, including diurnal rhythms of spawning, feeding, locomotor activity, shoaling, light/dark preference, and vertical position preference. Changes in circadian activity during zebrafish ontogeny are reviewed, including ageing-related alterations and chemically induced variations in rhythmicity patterns. Both exogenous and endogenous sources of inter-individual variability in zebrafish circadian behaviour are detailed. Additionally, we focus on different environmental factors with the potential to entrain circadian processes in zebrafish. This review describes two principal ways whereby diurnal behavioural rhythms can be entrained: (i) modulation of organismal physiological state, which can have masking or enhancing effects on behavioural endpoints related to endogenous circadian rhythms, and (ii) modulation of period and amplitude of the endogenous circadian rhythm due to competitive relationships between the primary and secondary zeitgebers. In addition, different peripheral oscillators in zebrafish can be entrained by diverse zeitgebers. This complicated orchestra of divergent influences may cause variability in zebrafish circadian behaviours, which should be given attention when planning behavioural studies.