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排序方式: 共有226条查询结果,搜索用时 31 毫秒
151.
Stout GJ Oosten Mv Acherrat FZ Wit Jd Vermeij WP Mullenders LH Gruijl FR Backendorf C 《DNA Repair》2005,4(11):1337-1344
Cellular DNA damage responses (DDRs) are induced by unrepaired DNA lesions and constitute a protective back-up system that prevents the expansion of damaged cells. These cellular signaling pathways trigger either growth arrest or cell death and are believed to be major components of an early anti-cancer barrier. Cultures of C57BL/6J keratinocytes with various defects in NER sub-pathways allowed us to follow the kinetics of DDRs in an isogenic background and in the proper (physiologically relevant) target cells, supplementing earlier studies in heterogenic human fibroblasts. In a series of well-controlled parallel experiments we have shown that, depending on the NER deficiency, murine keratinocytes elicited highly selective DDRs. After a dose of UV-B that did not affect wild-type keratinocytes, Xpa(-/-) keratinocytes (complete NER deficiency) showed a rapid depletion of DNA replicating S-phase cells, a transient increase in quiescent S-phase cells (not replicating DNA), followed by massive apoptosis. Csb(-/-) keratinocytes (TC-NER deficient) responded by a more sustained increase in QS-phase cells and appeared more resistant to UV-B induced apoptosis than Xpa(-/-). In irradiated Xpc(-/-) keratinocytes (GG-NER deficient) the loss of replicating S-phase cells was associated with a gradual build-up of both QS-phase cells and cells arrested in late-S phase, in complete absence of apoptosis. Our analysis complements and extends previous in vivo investigations and highlights both similarities and differences with earlier fibroblast studies. In vitro cultures of murine keratinocytes provide a new tool to unravel the molecular mechanisms of UV-induced cellular stress responses in great detail and in a physiologically relevant background. This will be essential to fully appreciate the implications of DDRs in tumor suppression and cancer prevention. 相似文献
152.
153.
Geerat J. Vermeij 《Evolution; international journal of organic evolution》1987,41(5):1046-1058
Stretches of deep ocean constitute barriers to the dispersal of many shallow-water marine species in the tropical Pacific. The purpose of this study was to assess the selectivity of these barriers with respect to the habitat characteristics, adult size, and predation-related shell architecture of gastropods, and to explore the implications of this selectivity for macroevolutionary patterns of extinction and speciation. The dispersal barrier between continental islands (represented in my collections by species from eastern Indonesia, the southern Philippines, and the north coast of New Guinea) and the nearby oceanic Palau Islands was studied by evaluating the percentage of each architectural and habitat category that is present on the continental islands but missing in Palau. The barrier is significantly more effective against sand-dwelling species than against rock-dwellers, and among rock-dwellers it is most effective against aperturally unarmored taxa. Barriers between Palau and Guam, Guam and the Hawaiian Islands, and the Line Islands and the tropical Eastern Pacific are generally unselective with respect to substratum type and architecture. The fact that narrow-apertured species are less affected by the barrier between the continental islands and Palau than are other rock-dwelling gastropods is consistent with the interpretation that this group has been unusually resistant to extinction and highly susceptible to founder speciation when oceanic circulation is altered. These patterns of susceptibility and geographical distribution may explain why armored gastropods have increased in numbers relative to unarmored ones in the tropical Pacific during the Cenozoic. 相似文献
154.
Evolution of alcohol dehydrogenase genes in peonies (Paeonia): phylogenetic relationships of putative nonhybrid species 总被引:11,自引:0,他引:11
Alcohol dehydrogenase genes were amplified by PCR, cloned, and sequenced
from 11 putative nonhybrid species of the angiosperm genus Paeonia.
Sequences of five exons and six intron regions of the Adh gene were used to
reconstruct the phylogeny of these species. Two paralogous genes, Adh1A,
and Adh2, were found; an additional gene, Adh1B, is also present in section
Moutan. Phylogenetic analyses of exon sequences of the Adh genes of Paeonia
and a variety of other angiosperms imply that duplication of Adh1 and Adh2
occurred prior to the divergence of Paeonia species and was followed by a
duplication resulting in Adh1A and Adh1B. Concerted evolution appears to be
absent between these paralogous loci. Phylogenetic analysis of only the
Paeonia Adh exon sequences, positioning the root of the tree between the
paralogous genes Adh1 and Adh2, suggests that the first evolutionary split
within the genus occurred between the shrubby section Moutan and the other
two herbaceous sections Oneapia and Paeonia. Restriction of Adh1B genes to
section Moutan may have resulted from deletion of Adh1B from the common
ancestor of sections Oneapia and Paeonia. A relative-rate test was designed
to compare rates of molecular change among lineages based on the divergence
of paralogous genes, and the results indicate a slower rate of evolution
within the shrubby section Moutan than in section Oneapia. This may be
responsible for the relatively long branch length of section Oneapia and
the short branch length between section Moutan and the other two sections
found on the Adh, ITS (nrDNA), and matK (cpDNA) phylogenies of the genus.
Adh1 and Adh2 intron sequences cannot be aligned, and we therefore carried
out separate analyses of Adh1A and Adh2 genes using exon and intron
sequences together. The Templeton test suggested that there is not
significant incongruence among Adh1A, ITS, and matK data sets, but that
these three data sets conflict significantly with Adh2 sequence data. A
combined analysis of Adh1A, ITS, and matK sequences produced a tree that is
better resolved than that of any individual gene, and congruent with
morphology and the results of artificial hybridization. It is therefore
considered to be the current best estimate of the species phylogeny.
Paraphyly of section Paeonia in the Adh2 gene tree may be caused by longer
coalescence times and random sorting of ancestral alleles.
相似文献
155.
Rolf W Sparidans Jan den Hartigh Jos H Beijnen Pieter Vermeij 《Journal of chromatography. B, Analytical technologies in the biomedical and life sciences》1998,705(2):483
The semi-automatic method for the determination of the bisphosphonate pamidronate in serum and citrate plasma involves a manual protein precipitation with trichloroacetic acid and a manual coprecipitation of the bisphosphonate with calcium phosphate, followed by an automated solid-phase extraction on anion-exchange columns. After off-line evaporation of the extract under nitrogen and reconstitution in water, the automatic procedure is continued by automatic derivatization with 1-naphthylisothiocyanate, ion-pair liquid–liquid extraction and a treatment with hydrogen peroxide, prior to analysis by ion-pair HPLC and fluorescence detection at 285/390 nm. The intra- and inter-day precisions are 1.3 and 7%, respectively, for a standard of 100 ng ml−1 pamidronate in serum; the average accuracy for this standard is 107%. The lower limit of quantification is 20 ng ml−1 pamidronate in 1 ml of human serum. 相似文献
156.
H I Harinck S E Papapoulos H J Blanksma A J Moolenaar P Vermeij O L Bijvoet 《BMJ (Clinical research ed.)》1987,295(6609):1301-1305
Early and late responses to treatment with either oral (600 mg/day) or intravenous (20 mg/day) (3-amino-1-hydroxypropylidene)-1,1-bisphosphonate (aminohydroxypropylidene bisphosphonate; APD) were studied in 142 patients with Paget''s disease of bone who had not previously been treated with bisphosphonate. The efficacy of three therapeutic regimens was compared: (a) oral aminohydroxypropylidene bisphosphonate given continuously until six months after the serum alkaline phosphatase activity had returned to normal (long term); (b) oral aminohydroxypropylidene bisphosphonate given until urinary hydroxyproline excretion had returned to normal (short term); (c) intravenous aminohydroxypropylidene bisphosphonate for 10 days. With either oral or intravenous treatment the decrease in urinary hydroxyproline excretion was rapid and always preceded the fall in serum alkaline phosphatase activity. Normal urinary hydroxyproline excretion is essential for return of the serum alkaline phosphatase activity to normal. Complete biochemical remission, defined as return of the serum alkaline phosphatase activity to normal, was obtained in 129 patients (91%). The median duration of remission as assessed by actuarial analysis was 2.7 years. This study found no difference in the long term among the three modes of treatment, suggesting that for most patients with Paget''s disease a short course of intravenous aminohydroxypropylidene bisphosphonate will produce longlasting, complete remission without need for maintenance treatment. 相似文献
157.
Amino acid sequence versus morphological data and the interordinal relationships of mammals 总被引:2,自引:0,他引:2
To a large extent, the mutual affinities of the mammalian orders continue
to puzzle systematists, even though comparative anatomy and amino acid
sequencing offer a massive data base from which these relationships could
potentially be adduced. In the present paper the consistency index--the
number of character states less the number of characters in a data set,
divided by the total number of changes in the character states on a
cladogram--was used to examine the relative resolving powers of recently
published morphological and molecular- sequence data. Consistency indices
were calculated for previously published alpha crystallin A chain and
myoglobin amino acid-sequence cladograms and for four original amino
acid-sequence cladograms (alpha crystallin A, myoglobin, and alpha and beta
hemoglobin); these were found to be comparable to the consistency indices
of morphologically based cladograms. Qualitative comparisons between the
morphologically based and molecularly based trees were also made; only
moderate congruence between the two was observed. Moreover, there was a
general lack of congruence between the cladograms specified by each of the
four proteins. Amino acid-sequence and morphological data agreed on the
placement of edentates as an early eutherian offshoot and on the grouping
of hyracoids, proboscideans, and sirenians. Otherwise there was only
limited congruence: morphology strongly supported the grouping of
lagomorphs and rodents and the alliance of pholidotes and edentates, but
sequence analyses did not. The placement of tubulidentates differed widely
among proteins. Morphology indicated the close association of sirenians
with proboscideans; proteins suggested a pairing of sirenians with
hyracoids. Sequence data did not identify many (morphologically
well-diagnosed) orders as monophyletic (e.g., Lagomorpha).(ABSTRACT
TRUNCATED AT 250 WORDS)
相似文献
158.
Sanchez D; Ganfornina MD; Gutierrez G; Bastiani MJ 《Molecular biology and evolution》1998,15(4):415-426
Arthropodan hemocyanins, prophenoloxidases (PPOs), and insect hexamerins
form a superfamily of hemolymph proteins that we propose to call the AHPH
superfamily. The evolutionary and functional relationships of these
proteins are illuminated by a new embryonic hemolymph protein (EHP) that is
expressed during early stages of development in the grasshopper embryo. EHP
is a 78-kDa soluble protein present initially in the yolk sac content, and
later in the embryonic hemolymph. Protein purification and peptide
sequencing were used to identify an embryonic cDNA clone coding for EHP. In
situ hybridization identifies hemocytes as EHP-expressing cells. As deduced
from the cDNA clone, EHP is a secreted protein with two potential
glycosylation sites. Sequence analysis defines EHP as a member of the AHPH
superfamily. Phylogenetic analyses with all the currently available AHPH
proteins, including EHP, were performed to ascertain the evolutionary
history of this protein superfamily. We used both the entire protein
sequence and each of the three domains present in the AHPH proteins. The
phylogenies inferred for each of the domains suggest a mosaic evolution of
these protein modules. Phylogenetic and multivariate analyses consistently
group EHP with crustacean hemocyanins and, less closely, with insect
hexamerins, relative to cheliceratan hemocyanins and PPOs. The grasshopper
protein rigorously preserves the residues involved in oxygen binding,
oligomerization, and allosteric regulation of the oxygen transport
proteins. Although insects were thought not to have hemocyanins, we propose
that EHP functions as an oxygen transport or storage protein during
embryonic development.
相似文献
159.
Multidimensional heteronuclear NMR studies have been applied to the
resonance assignment and conformational analysis of 13C-enriched
Neu5Acalpha2-3Galbeta1-4Glc. It is demonstrated that three-dimensional
ROESY-HSQC experiments provide through-space distance restraints which
cannot be observed with conventional homonuclear 1H techniques due to
resonance overlap. In particular, connectivities demonstrating the
existence of the "anti" conformation about the Galbeta1-4Glc glycosidic
linkage are unambiguously observed. It is shown that 13C isotopic
enrichment of the trisaccharide at a level >95% enables straightforward
measurement of trans-glycosidic 1H-13C and 13C-13C coupling constants and a
Karplus-type relation is derived for the latter. In total 15 conformational
restraints were obtained for the trisaccharide in aqueous solution, all of
which were in excellent agreement with theoretical parameters computed from
a 5 ns molecular dynamics simulation of the glycan.
相似文献
160.
Molecular phylogenetics of Stenodermatini bat genera: congruence of data from nuclear and mitochondrial DNA 总被引:2,自引:1,他引:1
Van den Bussche RA; Baker RJ; Wichman HA; Hamilton MJ 《Molecular biology and evolution》1993,10(5):944-959
Within the tribe Stenodermatini the systematics of the complex of species
allied with the genus Artibeus has generated several alternative
phylogenetic hypotheses. The most recent treatment recognized four genera
(Artibeus, Dermanura, Enchisthenes, and Koopmania) and suggested that the
most recent common ancestor of these four genera would include the common
ancestor of all other currently recognized Stenodermatini genera except
Sturnira. To test this hypothesis, we examined an EcoRI-defined nuclear
satellite DNA repeat and 402 bp of DNA sequence variation from the
mitochondrial cytochrome b gene. Phylogenetic conclusions based on Southern
blot analyses, in situ hybridization, and mitochondrial DNA sequence data
indicate that Enchisthenes is not closely related to Dermanura, Artibeus,
or Koopmania and that Dermanura, Artibeus, and Koopmania shared a common
ancestor after diverging from the remainder of the Stenodermatini. If our
conclusions are correct, then justification for recognizing Dermanura and
Koopmania as generically distinct from Artibeus must be based on the
magnitude of difference that distinguishes each rather than on the
conclusion that to place them as congeneric with Artibeus creates a
paraphyletic taxon.
相似文献