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21.
Toxicity and bioremediation of pesticides in agricultural soil 总被引:5,自引:0,他引:5
Greeshma Odukkathil Namasivayam Vasudevan 《Reviews in Environmental Science and Biotechnology》2013,12(4):421-444
Pesticides are one of the persistent organic pollutants which are of concern due to their occurrence in various ecosystems. In nature, the pesticide residues are subjected to physical, chemical and biochemical degradation process, but because of its high stability and water solubility, the pesticide residues persist in the environment. Moreover, the prevailing environmental conditions like the soil characteristics also contribute for their persistence. Bioremediation is one of the options for the removal of pesticides from environment. One important uncertainty associated with the implementation of bioremediation is the low bioavailability of some of the pesticides in the heterogeneous subsurface environment. Bioavailability of a compound depends on numerous factors within the cells of microorganism like the transportation of susbstrate across cell membrane, enzymatic reactions, biosurfactant production etc. as well as environment conditions such as pH, temperature, availability of electron acceptor etc. Pesticides like dichlorodiphenyltrichloroethane (DDT), hexachlorocyclohexane (HCH), Endosulfan, benzene hexa chloride (BHC), Atrazine etc. are such ubiquitous compounds which persist in soil and sediments due to less bioavailability. The half life of such less bioavailable pesticides ranges from 100 to 200 days. Most of these residues get adsorbed to soil particles and thereby becomes unavailable to microbes. In this review, an attempt has been made to present a brief idea on ‘major limitations in pesticide biodegradation in soil’ highlighting a few studies. 相似文献
22.
Quan-Xiang Wei Rainer Claus Thomas Hielscher Daniel Mertens Aparna Raval Christopher C. Oakes Stephan M. Tanner Albert de la Chapelle John C. Byrd Stephan Stilgenbauer Christoph Plass 《PloS one》2013,8(1)
We previously reported a rare germline variant (c.1-6531) that resulted in allele–specific expression (ASE) of death-associated protein kinase 1 (DAPK1) and predisposition to chronic lymphocytic leukemia (CLL). We investigated a cohort of CLL patients lacking this mutation for the presence of ASE of DAPK1. We developed a novel strategy that combines single-nucleotide primer extension (SNuPE) with MALDI-TOF mass spectrometry, and detected germline DAPK1 ASE in 17 out of 120 (14.2%) CLL patients associated with a trend towards younger age at diagnosis. ASE was absent in 63 healthy controls. Germline cells of CLL patients with ASE showed increased levels of DNA methylation in the promoter region, however, neither genetic nor further epigenetic aberrations could be identified in the DAPK1 5′ upstream regulatory region, within distinct exons or in the 3′-UTR. We identified B-lymphoid malignancy related cell line models harboring allelic imbalance and found that allele-specific methylation in DAPK1 is associated with ASE. Our data indicate that ASE at the DAPK1 gene locus is a recurrent event, mediated by epigenetic mechanisms and potentially predisposing to CLL. 相似文献
23.
R. Sridevi Preeti Bajaj Aparna Dutta-Gupta 《Invertebrate reproduction & development.》2013,57(2-3):177-185
Summary 20-hydroxyecdysone stimulates protein synthesis in the male accessory reproductive glands of pharate adults of Spodoptera litura both in vivo and in vitro. Juvenile hormone-I has no synergistic effect when given in conjunction with ecdysone in vivo but it inhibits ecdysone-stimulated protein synthesis in vitro. 相似文献
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25.
Momordica charantia is a well known medicinal plant used in the traditional medicinal system for the treatment of various diseases
including diabetes mellitus. Recently, a novel protein termed as ADMc1 from the seed extract of M. charantia has been identified
and isolated showing significant antihyperglycemic activity in type 1 diabetic rats in which diabetes was induced. However, the
structure of this protein has not yet been analyzed. Homology modeling approach was used to generate a high quality protein 3D
structure for the amino acid sequence of the ADMc1 protein in this study. The comparative assessment of secondary structures
revealed ADMc1 as an all-alpha helix protein with random coils. Tertiary structure predicted on the template structure of Napin of
B. Napus (PDB ID: 1SM7) with which the ADMc1 showed significant sequence similarity, was validated using protein structure
validation tools like PROCHECK, WHAT_CHECK, VERIFY3D and ProSA. Arrangement of disulfide bridges formed by cysteine
residues were predicted by the Dianna 1.1 server. The presence of multiple disulfide bond confers the stable nature of the ADMc1
protein. Further, the biological activity of the ADMc1 was assessed in non-obese diabetic (NOD) mice which are spontaneous
model of type 1 diabetes. Significant reduction in the blood glucose levels of NOD mice was observed up to 8 h post administration
of the rADMc1 protein. Overall, the structural characterizations with antihyperglycemic activity of this seed protein of Momordica
charantia demonstrate its potential as an antidiabetic agent. 相似文献
26.
Y-H Fan J Cheng S A Vasudevan J Dou H Zhang R H Patel I T Ma Y Rojas Y Zhao Y Yu H Zhang J M Shohet J G Nuchtern E S Kim J Yang 《Cell death & disease》2013,4(10):e867
Neuroblastoma (NB) is a common pediatric cancer and contributes to more than 15% of all pediatric cancer-related deaths. Unlike adult tumors, recurrent somatic mutations in NB, such as tumor protein 53 (p53) mutations, occur with relative paucity. In addition, p53 downstream function is intact in NB cells with wild-type p53, suggesting that reactivation of p53 may be a viable therapeutic strategy for NB treatment. Herein, we report that the ubiquitin-specific protease 7 (USP7) inhibitor, , potently induces apoptosis in NB cells with an intact USP7-HDM2-p53 axis but not in NB cells with mutant p53 or without human homolog of MDM2 (HDM2) expression. In this study, we found that P22077 stabilized p53 by inducing HDM2 protein degradation in NB cells. P22077 also significantly augmented the cytotoxic effects of doxorubicin (Dox) and etoposide (VP-16) in NB cells with an intact USP7-HDM2-p53 axis. Moreover, P22077 was found to be able to sensitize chemoresistant LA-N-6 NB cells to chemotherapy. In an in vivo orthotopic NB mouse model, P22077 significantly inhibited the xenograft growth of three NB cell lines. Database analysis of NB patients shows that high expression of USP7 significantly predicts poor outcomes. Together, our data strongly suggest that targeting USP7 is a novel concept in the treatment of NB. USP7-specific inhibitors like P22077 may serve not only as a stand-alone therapy but also as an effective adjunct to current chemotherapeutic regimens for treating NB with an intact USP7-HDM2-p53 axis. P22077相似文献
27.
Youichi Suzuki Wei-Xin Chin Qi'En Han Koji Ichiyama Ching Hua Lee Zhi Wen Eyo Hirotaka Ebina Hirotaka Takahashi Chikako Takahashi Beng Hui Tan Takayuki Hishiki Kenji Ohba Toshifumi Matsuyama Yoshio Koyanagi Yee-Joo Tan Tatsuya Sawasaki Justin Jang Hann Chu Subhash G. Vasudevan Kouichi Sano Naoki Yamamoto 《PLoS pathogens》2016,12(1)
Dengue virus (DENV) is one of the most important arthropod-borne pathogens that cause life-threatening diseases in humans. However, no vaccine or specific antiviral is available for dengue. As seen in other RNA viruses, the innate immune system plays a key role in controlling DENV infection and disease outcome. Although the interferon (IFN) response, which is central to host protective immunity, has been reported to limit DENV replication, the molecular details of how DENV infection is modulated by IFN treatment are elusive. In this study, by employing a gain-of-function screen using a type I IFN-treated cell-derived cDNA library, we identified a previously uncharacterized gene, C19orf66, as an IFN-stimulated gene (ISG) that inhibits DENV replication, which we named Repressor of yield of DENV (RyDEN). Overexpression and gene knockdown experiments revealed that expression of RyDEN confers resistance to all serotypes of DENV in human cells. RyDEN expression also limited the replication of hepatitis C virus, Kunjin virus, Chikungunya virus, herpes simplex virus type 1, and human adenovirus. Importantly, RyDEN was considered to be a crucial effector molecule in the IFN-mediated anti-DENV response. When affinity purification-mass spectrometry analysis was performed, RyDEN was revealed to form a complex with cellular mRNA-binding proteins, poly(A)-binding protein cytoplasmic 1 (PABPC1), and La motif-related protein 1 (LARP1). Interestingly, PABPC1 and LARP1 were found to be positive modulators of DENV replication. Since RyDEN influenced intracellular events on DENV replication and, suppression of protein synthesis from DENV-based reporter construct RNA was also observed in RyDEN-expressing cells, our data suggest that RyDEN is likely to interfere with the translation of DENV via interaction with viral RNA and cellular mRNA-binding proteins, resulting in the inhibition of virus replication in infected cells. 相似文献
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29.
The oscillatory insulin release is fundamental to normal glycemic control. The basis of the oscillation is the intercellular coupling and bursting synchronization of beta cells in each islet. The functional role of islet beta cell mass organization with respect to its oscillatory bursting is not well understood. This is of special interest in view of the recent finding of islet cytoarchitectural differences between human and animal models. In this study we developed a new hexagonal closest packing (HCP) cell cluster model. The model captures more accurately the real islet cell organization than the simple cubic packing (SCP) cluster that is conventionally used. Using our new model we investigated the functional characteristics of beta-cell clusters, including the fraction of cells able to burst f(b), the synchronization index lambda of the bursting beta cells, the bursting period T(b), the plateau fraction p(f), and the amplitude of intracellular calcium oscillation [Ca]. We determined their dependence on cluster architectural parameters including number of cells n(beta), number of inter-beta cell couplings of each beta cell n(c), and the coupling strength g(c). We found that at low values of n(beta), n(c) and g(c), the oscillation regularity improves with their increasing values. This functional gain plateaus around their physiological values in real islets, at n(beta) approximately 100, n(c) approximately 6 and g(c) approximately 200 pS. In addition, normal beta-cell clusters are robust against significant perturbation to their architecture, including the presence of non-beta cells or dead beta cells. In clusters with n(beta)> approximately 100, coordinated beta-cell bursting can be maintained at up to 70% of beta-cell loss, which is consistent with laboratory and clinical findings of islets. Our results suggest that the bursting characteristics of a beta-cell cluster depend quantitatively on its architecture in a non-linear fashion. These findings are important to understand the islet bursting phenomenon and the regulation of insulin secretion, under both physiological and pathological conditions. 相似文献
30.
Adenylyltransferase is a bifunctional enzyme that controls the enzymatic activity of dodecameric glutamine synthetase in Escherichia coli by reversible adenylylation and deadenylylation. Previous studies showed that the two similar but chemically distinct reactions are carried out by separate domains within adenylyltransferase. The N-terminal domain carries the deadenylylation activity, and the C-terminal domain carries the adenylylation activity [Jaggi R, van Heeswijk WC, Westerhoff HV, Ollis DL & Vasudevan SG (1997) EMBO J16, 5562-5571]. In this study, we further map the domain junctions of adenylyltransferase on the basis of solubility and enzymatic analysis of truncation constructs, and show for the first time that adenylyltransferase has three domains: the two activity domains and a central, probably regulatory (R), domain connected by interdomain Q-linkers (N-Q1-R-Q2-C). The various constructs, which have the opposing domain and or central domain removed, all retain their activity in the absence of their respective nitrogen status indicator, i.e. PII or PII-UMP. A panel of mAbs to adenylyltransferase was used to demonstrate that the cellular nitrogen status indicators, PII and PII-UMP, probably bind in the central regulatory domain to stimulate the adenylylation and deadenylylation reactions, respectively. In the light of these results, intramolecular signaling within adenylyltransferase is discussed. 相似文献