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41.
42.
Although biological conservation has traditionally focused on the protection of pristine areas, it is becoming increasingly evident that efforts should also be made toward the maintenance of biological diversity in human‐managed ecosystems. We evaluated the potential role of scattered, remnant trees in enhancing ant diversity in agricultural lands within a biodiversity hotspot, namely the Cerrado savannas of central Brazil. Ant collections were performed in, beneath, and away from the crowns of a native tree species growing in planted pastures, soy fields, and in small (<400 ha) savanna reserves. Significantly more ant species were found beneath than 30 m away from scattered trees. The magnitude of this effect was similar in soy fields and in pastures at all scales of our analyses, except at the landscape scale where the effect was comparatively greater in soy fields. Most of the species that occurred more frequently beneath than away from trees nest on ground, indicating that the conservation value of scattered trees goes beyond the mere protection of arboreal ant species. Soy plantations presented a particular species‐poor ground‐dwelling fauna when compared with savannas, whereas differences in the number and composition of arboreal species were less marked. In contrast, the diversity of arboreal‐ and ground‐dwelling ants recorded in and beneath pasture trees was nearly as high as the one found in savannas. It is suggested that pasture trees can have an important value for ant conservation off reserves, particularly in regions where most of the native vegetation has already been cleared. 相似文献
43.
Jeronymo Dalapicolla Ronnie Alves Rodolfo Jaff Santelmo Vasconcelos Eder Soares Pires Gisele Lopes Nunes Jovani Bernardino de Souza Pereira Jos Tasso F. Guimares Mariana C. Dias Taís Nogueira Fernandes Daniela Scherer Fernando Marino Gomes dos Santos Alexandre Castilho Mirella Pupo Santos Emiliano Nicolas Caldern Rodrigo Lemes Martins Rodrigo Nunes da Fonseca Francisco de Assis Esteves Cecílio Frois Caldeira Guilherme Oliveira 《Ecology and evolution》2021,11(15):10119
The quillwort Isoëtes cangae is a critically endangered species occurring in a single lake in Serra dos Carajás, Eastern Amazon. Low genetic diversity and small effective population sizes (N e) are expected for narrow endemic species (NES). Conservation biology studies centered in a single species show some limitations, but they are still useful considering the limited time and resources available for protection of species at risk of extinction. Here, we evaluated the genetic diversity, population structure, N e, and minimum viable population (MVP) of I. cangae to provide information for effective conservation programs. Our analyses were based on 55 individuals collected from the Amendoim Lake and 35,638 neutral SNPs. Our results indicated a single panmictic population, moderate levels of genetic diversity, and N e in the order of thousands, contrasting the expected for NES. Negative FIS values were also found, suggesting that I. cangae is not under risk of inbreeding depression. Our findings imply that I. cangae contains enough genetic diversity to ensure evolutionary potential and that all individuals should be treated as one demographic unit. These results provide essential information to optimize ex situ conservation efforts and genetic diversity monitoring, which are currently applied to guide I. cangae conservation plans. 相似文献
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Total community, planktonic and benthic metabolisms were measured by using the carbon dioxide production and consumption, the diurnal curve' method and the in situ bottle incubation technique over an annual cycle in two sublagoons of the Saquarema Lagoon, Brazil. Metabolic rates of the phytoplankton-based lagoon were characterized by considerable daytime and daily variability in production and respiration, by a seasonal shift between net autotrophy and heterotrophy and by an annual balance of production (P = 105 ± 65 mmoles/m2/dayn = 25) and respiration (R = 102 ± 50 mmoles/m2/dayn = 25). Total community metabolism was similar throughout the lagoon, but phytoplankton assimilation rates and benthic respiration showed spatial differences. Bottle incubations compared to total community free water respiration suggested that the pelagic community was 2–5 times more active than the benthos 相似文献
46.
Contrasting Effects of Fire on Arboreal and Ground‐Dwelling Ant Communities of a Neotropical Savanna
Ants are a dominant group in tropical savannas and here we examined the responses of the arboreal and ground‐dwelling ant fauna to a fire in a Neotropical savanna (cerrado) reserve in Central Brazil. Ants were collected using pitfall traps and baits placed in trees and on the ground beneath each tree. Of the 36 trees marked along two transects, half (from each transect) were burned and half not. The same trees were sampled 1 wk before and again 3 and 12 mo after the fire. Rarefaction curves and ordination analyses using data from all trees from each side of each transect indicated that overall ant species richness and composition did not change after fire. Fire, however, reduced the mean number of ant species per tree, and increased the mean number of species on the ground. Fire increased the average abundance of specialist predators, Camponotini, and opportunistic species, and decreased that of arboreal specialists. Changes in the ground‐dwelling fauna were only detected 12 mo after the fire, while those in the arboreal fauna occurred earlier and were no longer apparent 12 mo after the fire. We suggest that these contrasting results represent mainly an indirect response of the ant communities to fire‐induced changes in vegetation. Given the temporary and small scale nature of the effects detected and the overall resilience of the ant fauna, our results indicate that a single fire in the cerrado vegetation does not greatly impact the structure of ant communities in the short term. 相似文献
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48.
Guillermín Agüero-Chapin Gisselle Pérez-Machado Reinaldo Molina-Ruiz Yunierkis Pérez-Castillo Aliuska Morales-Helguera Vítor Vasconcelos Agostinho Antunes 《Amino acids》2011,40(2):431-442
Bacteriocins are proteinaceous toxins produced and exported by both gram-negative and gram-positive bacteria as a defense
mechanism. The bacteriocin protein family is highly diverse, which complicates the identification of bacteriocin-like sequences
using alignment approaches. The use of topological indices (TIs) irrespective of sequence similarity can be a promising alternative
to predict proteinaceous bacteriocins. Thus, we present Topological Indices to BioPolymers (TI2BioP) as an alignment-free
approach inspired in both the Topological Substructural Molecular Design (TOPS-MODE) and Markov Chain Invariants for Network
Selection and Design (MARCH-INSIDE) methodology. TI2BioP allows the calculation of the spectral moments as simple TIs to seek
quantitative sequence-function relationships (QSFR) models. Since hydrophobicity and basicity are major criteria for the bactericide
activity of bacteriocins, the spectral moments (HPμ
k
) were derived for the first time from protein artificial secondary structures based on amino acid clustering into a Cartesian
system of hydrophobicity and polarity. Several orders of HPμ
k
characterized numerically 196 bacteriocin-like sequences and a control group made up of 200 representative CATH domains.
Subsequently, they were used to develop an alignment-free QSFR model allowing a 76.92% discrimination of bacteriocin proteins
from other domains, a relevant result considering the high sequence diversity among the members of both groups. The model
showed a prediction overall performance of 72.16%, detecting specifically 66.7% of proteinaceous bacteriocins whereas the
InterProScan retrieved just 60.2%. As a practical validation, the model also predicted successfully the cryptic bactericide
function of the Cry 1Ab C-terminal domain from Bacillus thuringiensis’s endotoxin, which has not been detected by classical alignment methods. 相似文献
49.
Imran Khan Emanuel Maldonado Vítor Vasconcelos Stephen J O’Brien Warren E Johnson Agostinho Antunes 《BMC genomics》2014,15(1)
Background
Adaptation of mammals to terrestrial life was facilitated by the unique vertebrate trait of body hair, which occurs in a range of morphological patterns. Keratin associated proteins (KRTAPs), the major structural hair shaft proteins, are largely responsible for hair variation.Results
We exhaustively characterized the KRTAP gene family in 22 mammalian genomes, confirming the existence of 30 KRTAP subfamilies evolving at different rates with varying degrees of diversification and homogenization. Within the two major classes of KRTAPs, the high cysteine (HS) subfamily experienced strong concerted evolution, high rates of gene conversion/recombination and high GC content. In contrast, high glycine-tyrosine (HGT) KRTAPs showed evidence of positive selection and low rates of gene conversion/recombination. Species with more hair and of higher complexity tended to have more KRATP genes (gene expansion). The sloth, with long and coarse hair, had the most KRTAP genes (175 with 141 being intact). By contrast, the “hairless” dolphin had 35 KRTAPs and the highest pseudogenization rate (74% relative to the 19% mammalian average). Unique hair-related phenotypes, such as scales (armadillo) and spines (hedgehog), were correlated with changes in KRTAPs. Gene expression variation probably also influences hair diversification patterns, for example human have an identical KRTAP repertoire as apes, but much less hair.Conclusions
We hypothesize that differences in KRTAP gene repertoire and gene expression, together with distinct rates of gene conversion/recombination, pseudogenization and positive selection, are likely responsible for micro and macro-phenotypic hair diversification among mammals in response to adaptations to ecological pressures.Electronic supplementary material
The online version of this article (doi:10.1186/1471-2164-15-779) contains supplementary material, which is available to authorized users. 相似文献50.
de Lourdes Corradi da Silva M Fukuda EK Vasconcelos AF Dekker RF Matias AC Monteiro NK Cardoso MS Barbosa AM Silveira JL Sassaki GL Carbonero ER 《Carbohydrate research》2008,343(4):793-798
Three D-glucans were isolated from the mycelium of the fungus Botryosphaeria rhodina MAMB-05 by sequential extraction with hot-water and hot aqueous KOH (2% w/v) followed by ethanol precipitation. Following their purification by gel permeation chromatography on Sepharose CL-4B, the structural characteristics of the D-glucans were determined by FT-IR and 13C NMR spectroscopy and, after methylation, by GC-MS. The hot-water extract produced a fraction designated Q1A that was a beta-(1-->6)-D-glucan with the following structure: [Formula: see text] The alkaline extract, when subjected to repeated freeze-thawing, yielded two fractions: K1P (insoluble) that comprised a beta-(1-->3)-D-glucan with beta-D-glucose branches at C-6 with the structure: [Formula: see text] and K1SA (soluble) consisting of a backbone chain of alpha-(1-->4)-linked D-glucopyranosyl residues substituted at O-6 with alpha-D-glucopyranosyl residues: [Formula: see text] 相似文献