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Christophe Rodriguez Nicolas de Prost Slim Fourati Claudie Lamoureux Guillaume Gricourt Melissa Ndebi Florence Canoui-Poitrine Isaac Dsveaux Oriane Picard Vanessa Demontant Elisabeth Trawinski Raphaël Lepeule Laure Surgers William Vindrios Jean-Daniel Lelivre Nicolas Mongardon Olivier Langeron Jos L. Cohen Armand Mekontso-Dessap Paul-Louis Woerther Jean-Michel Pawlotsky 《PLoS pathogens》2021,17(3)
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Joyce M Ngoi Peter K Quashie Collins M Morang'a Joseph HK Bonney Dominic SY Amuzu Selassie Kumordjie Ivy A Asante Evelyn Y Bonney Miriam Eshun Linda Boatemaa Vanessa Magnusen Erasmus N Kotey Nicaise T Ndam Frederick Tei-Maya Augustina K Arjarquah Evangeline Obodai Isaac D Otchere Yaw Bediako Joe K Mutungi Lucas N Amenga-Etego John K Odoom Abraham K Anang George B Kyei Bright Adu William K Ampofo Gordon A Awandare 《Experimental biology and medicine (Maywood, N.J.)》2021,246(8):960
The confirmed case fatality rate for the coronavirus disease 2019 (COVID-19) in Ghana has dropped from a peak of 2% in March to be consistently below 1% since May 2020. Globally, case fatality rates have been linked to the strains/clades of circulating severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) within a specific country. Here we present 46 whole genomes of SARS-CoV-2 circulating in Ghana, from two separate sequencing batches: 15 isolates from the early epidemic (March 12–April 1 2020) and 31 from later time-points ( 25–27 May 2020). Sequencing was carried out on an Illumina MiSeq system following an amplicon-based enrichment for SARS-CoV-2 cDNA. After genome assembly and quality control processes, phylogenetic analysis showed that the first batch of 15 genomes clustered into five clades: 19A, 19B, 20A, 20B, and 20C, whereas the second batch of 31 genomes clustered to only three clades 19B, 20A, and 20B. The imported cases (6/46) mapped to circulating viruses in their countries of origin, namely, India, Hungary, Norway, the United Kingdom, and the United States of America. All genomes mapped to the original Wuhan strain with high similarity (99.5–99.8%). All imported strains mapped to the European superclade A, whereas 5/9 locally infected individuals harbored the B4 clade, from the East Asian superclade B. Ghana appears to have 19B and 20B as the two largest circulating clades based on our sequence analyses. In line with global reports, the D614G linked viruses seem to be predominating. Comparison of Ghanaian SARS-CoV-2 genomes with global genomes indicates that Ghanaian strains have not diverged significantly from circulating strains commonly imported into Africa. The low level of diversity in our genomes may indicate lower levels of transmission, even for D614G viruses, which is consistent with the relatively low levels of infection reported in Ghana. 相似文献
995.
Silva Larissa Cardoso de Souza Lago Heitor Rocha Márcia Oliveira Terra de Oliveira Vanessa Sales Laureano-Melo Roberto Stutz Evandro Toledo Gerhardt de Paula Breno Pereira Martins José Francisco Pereira Luchese Rosa Helena Guerra André Fioravante Rodrigues Paula 《Probiotics and antimicrobial proteins》2021,13(3):698-708
Probiotics and Antimicrobial Proteins - This study aimed to produce a probiotic-containing functional wheat beer (PWB) by an axenic culture system with potential probiotic Saccharomyces cerevisiae... 相似文献
996.
Gabriel Arantes dos Santos Ruan Pimenta Nayara I. Viana Vanessa R. Guimarães Poliana Romão Patrícia Candido Juliana A. de Camargo Diná M. Hatanaka Paula GS. Queiroz Alexandre Teruya Katia R.M. Leite Victor Srougi Miguel Srougi Sabrina T. Reis 《Biochemistry and Biophysics Reports》2021
The infection by COVID-19 is a serious global public health problem. An efficient way to improve this disease's clinical management would be to characterize patients at higher risk of progressing to critically severe infection using prognostic biomarkers. The telomere length could be used for this purpose. Telomeres are responsible for controlling the number of maximum cell divisions. The telomere length is a biomarker of aging and several diseases. We aimed to compare leukocyte telomere length (LTL) between patients without COVID-19 and patients with different clinical severity of the infection. Were included 53 patients who underwent SARS-CoV-2 PCR divided in four groups. The first group was composed by patients with a negative diagnosis for COVID-19 (n = 12). The other three groups consisted of patients with a confirmed diagnosis of COVID-19 divided according to the severity of the disease: mild (n = 15), moderate (n = 17) and severe (n = 9). The LTL was determined by Q-PCR. The severe group had the shortest LTL, followed by the moderate group. The negative and mild groups showed no differences. There is an increase of patients with hypertension (p = 0.0099) and diabetes (p = 0.0067) in moderate and severe groups. Severe group was composed by older patients in comparison with the other three groups (p = 0.0083). Regarding sex, there was no significant difference between groups (p = 0.6279). In an ordinal regression model, only LTL and diabetes were significantly associated with disease severity. Shorter telomere length was significantly associated with the severity of COVID-19 infection, which can be useful as a biomarker or to better understand the SARS-CoV-2 pathophysiology. 相似文献
997.
Katarzyna Heller-Uszynska Grzegorz Uszynski Eric Huttner Margaret Evers Jason Carlig Vanessa Caig Karen Aitken Phillip Jackson George Piperidis Mike Cox Ross Gilmour Angelique D??Hont Mike Butterfield Jean-Christophe Glaszmann Andrzej Kilian 《Molecular breeding : new strategies in plant improvement》2011,28(1):37-55
Diversity Arrays Technology (DArT) provides whole genome profiling for hundreds to thousands of polymorphic markers in a single assay using a high-throughput microarray platform. The presented work aimed to establish DArT genotyping for the genetically challenging genome of sugarcane. Due to the genome complexity of this sugar-producing crop of high economic importance, an application of DArT genotyping to this species required extensive testing and optimization. As the method of genome complexity reduction determines the efficiency of polymorphism identification in DArT, various approaches and several methods were tested, in order to establish the most optimal. The sugarcane DArT markers generated with these established methods identified high genetic differentiation of sugarcane ancestral species from modern cultivars, in agreement with the data available for other types of molecular markers for this crop. The majority of sugarcane DArT markers segregated in a Mendelian fashion and were readily incorporated into the framework genetic map. As the DArT markers are sequence-ready genomic clones, we sequenced 384 clones and found that one-third of sequenced markers came from the transcribed portion of the sugarcane genome. The presented results further validate the potential of DArT technology in providing cost-effective genetic profiles for plants, irrespective of their genome complexity, for effective applications in molecular-assisted breeding, diversity analysis or genetic identity testing. 相似文献
998.
Egg parasitoids of the stink bug Edessa meditabunda (F) were studied on rattlepod Crotalaria spectabilis used in soybean crop rotation in Campo Novo do Parecis, Mato Grosso state, central western Brazil. Seven species of parasitoids were found: two Encyrtidae, one Eurytomidae, and four Platygastridae. The occurrence of Trissolcus euchisti (Ashmead) and Trissolcus elimatus Johnson (Platygastridae) on eggs of E. meditabunda is recorded for the first time. Moreover, this is the first record of T. elimatus and T. euchisti from Brazil. 相似文献
999.
Desplat V Moreau S Belisle-Fabre S Thiolat D Uranga J Lucas R de Moor L Massip S Jarry C Mossalayi DM Sonnet P Déléris G Guillon J 《Journal of enzyme inhibition and medicinal chemistry》2011,26(5):657-667
A novel series of isoindolo[2,1-a]quinoxaline and indolo[1,2-a]quinoxaline derivatives was synthesized and evaluated in vitro against various human cancer cell lines for antiproliferative activity. These new compounds displayed activity against leukemia and breast cancer cell lines in the 3- to 18-μM concentration range. 相似文献
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