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101.
Comparison of the evolutionary dynamics of symbiotic and housekeeping loci: a case for the genetic coherence of rhizobial lineages 总被引:6,自引:1,他引:5
In prokaryotes, lateral gene transfer across chromosomal lineages may be
mediated by plasmids, phages, transposable elements, and other accessory
DNA elements. However, the importance of such transfer and the evolutionary
forces that may restrict gene exchange remain largely unexplored in native
settings. In this study, tests of phylogenetic congruence are employed to
explore the range of horizontal transfer of symbiotic (sym) loci among
distinct chromosomal lineages of native rhizobia, the nitrogen-fixing
symbiont of legumes. Rhizobial strains isolated from nodules of several
host plant genera were sequenced at three loci: symbiotic nodulation genes
(nodB and nodC), the chromosomal housekeeping locus glutamine synthetase II
(GSII), and a portion of the 16S rRNA gene. Molecular phylogenetic analysis
shows that each locus generally subdivides strains into the same major
groups, which correspond to the genera Rhizobium, Sinorhizobium, and
Mesorhizobium. This broad phylogenetic congruence indicates a lack of
lateral transfer across major chromosomal subdivisions, and it contrasts
with previous studies of agricultural populations showing broad transfer of
sym loci across divergent chromosomal lineages. A general correspondence of
the three rhizobial genera with major legume groups suggests that host
plant associations may be important in the differentiation of rhizobial nod
and chromosomal loci and may restrict lateral transfer among strains. The
second major result is a significant incongruence of nod and GSII
phylogenies within rhizobial subdivisions, which strongly suggests
horizontal transfer of nod genes among congenerics. This combined evidence
for lateral gene transfer within, but not between, genetic subdivisions
supports the view that rhizobial genera are "reproductively isolated" and
diverge independently. Differences across rhizobial genera in the
specificity of host associations imply that the evolutionary dynamics of
the symbiosis vary considerably across lineages in native settings.
相似文献
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C Erneux M Lemos B Verjans P Vanderhaeghen A Delvaux J E Dumont 《European journal of biochemistry》1989,181(2):317-322
Ins(1,4,5)P3 5-phosphatase catalyses the dephosphorylation of Ins(1,4,5)P3 in the 5 position. At 1 microM Ins(1,4,5)P3, 10-15% of total activity of a bovine brain homogenate was measured in the soluble fraction, whereas 85-90% was in the particulate fraction. Particulate activity could be solubilized by cholate or, to a lower extent, by 2 M KCl. Two soluble enzymes (type I and type II) could be fractionated by DEAE-Sephacel chromatography. Soluble activities have been further purified by blue-Sepharose, Sephacryl S-200 and phosphocellulose chromatography. Specific activities reached 10-30 mumol.min-1 mg protein-1 for type I and were 10-20 times lower for type II. Type I and type II Ins(1,4,5)P3 5-phosphatase displayed different Km values and molecular masses, as estimated by gel filtration. Type I dephosphorylated both Ins(1,4,5)P3 and Ins(1,3,4,5)P4; in contrast, type II specifically dephosphorylated Ins(1,4,5)P3 but not Ins(1,3,4,5)P4. Type I Ins(1,4,5)P3 5-phosphatase eluted as a single peak of activity with an apparent molecular mass of 51 kDa when gel filtration was performed in the presence of cholate. This molecular mass is identical to the molecular mass estimated for the particulate Ins(1,4,5)P3 5-phosphatase that was solubilized by cholate. Km values for Ins(1,4,5)P3 and Ins(1,3,4,5)P4 obtained with type I Ins(1,4,5)P3 5-phosphatase were 11 microM and 1 microM, respectively. Similar values were obtained with particulate Ins(1,4,5)P3 5-phosphatase. In conclusion, the catalytic domains of type I and particulate Ins(1,4,5)P3 5-phosphatase activity may be very similar, if not identical, but different from type II phosphatase. 相似文献
104.
Interactions of Photobleaching and Inorganic Nutrients in Determining Bacterial Growth on Colored Dissolved Organic Carbon 总被引:8,自引:0,他引:8
Abstract Bacteria are key organisms in the processing of dissolved organic carbon (DOC) in aquatic ecosystems. Their growth depends on both organic substrates and inorganic nutrients. The importance of allochthonous DOC, usually highly colored, as bacterial substrate can be modified by photobleaching. In this study, we examined how colored DOC (CDOC) photobleaching, and phosphorus (P) and nitrogen (N) availability, affect bacterial growth. Five experiments were conducted, manipulating nutrients (P and N) and sunlight exposure. In almost every case, nutrient additions had a significant, positive effect on bacterial abundance, production, and growth efficiency. Sunlight exposure (CDOC photobleaching) had a significant, positive effect on bacterial abundance and growth efficiency. We also found a significant, positive interaction between these two factors. Thus, bacterial use of CDOC was accelerated under sunlight exposure and enhanced P and N concentrations. In addition, the accumulation of cells in sunlight treatments was dependent on nutrient availability. More photobleached substrate was converted into bacterial cells in P- and N-enriched treatments. These results suggest nutrient availability may affect the biologically-mediated fate (new biomass vs respiration) of CDOC. 相似文献
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