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121.
Singh P Mittal A Bhardwaj A Kaur S Kumar S 《Bioorganic & medicinal chemistry letters》2008,18(1):85-89
Indoles carrying a cyclic ester (gamma-butyrolactone) at C-3 position have been synthesized by the allylation of 3-indoleglyoxylate followed by iodocyclisation and the nucleophilic replacement of the iodo-group. Screening of these molecules for COX-2 inhibition and anti-cancer activities has identified compounds 10 and 11 as highly potent and selective for COX-2 as well as showing remarkable anti-cancer activities (better than that of indomethacin). 相似文献
122.
The problem of predicting non-long terminal repeats (LTR) like long interspersed nuclear elements (LINEs) and short interspersed nuclear elements (SINEs) from the DNA sequence is still an open problem in bioinformatics. To elevate the quality of annotations of LINES and SINEs an automated tool "RetroPred" was developed. The pipeline allowed rapid and thorough annotation of non-LTR retrotransposons. The non-LTR retrotransposable elements were initially predicted by Pairwise Aligner for Long Sequences (PALS) and Parsimonious Inference of a Library of Elementary Repeats (PILER). Predicted non-LTR elements were automatically classified into LINEs and SINEs using ANN based on the position specific probability matrix (PSPM) generated by Multiple EM for Motif Elicitation (MEME). The ANN model revealed a superior model (accuracy = 78.79 +/- 6.86 %, Q(pred) = 74.734 +/- 17.08 %, sensitivity = 84.48 +/- 6.73 %, specificity = 77.13 +/- 13.39 %) using four-fold cross validation. As proof of principle, we have thoroughly annotated the location of LINEs and SINEs in rice and Arabidopsis genome using the tool and is proved to be very useful with good accuracy. Our tool is accessible at http://www.juit.ac.in/RepeatPred/home.html. 相似文献
123.
Achyut BR Ghoshal UC Moorchung N Mittal B 《Molecular and cellular biochemistry》2009,321(1-2):103-109
In India, the role of host genetic factors is poorly studied for Helicobacter pylori associated diseases. Therefore, we evaluated the association of functionally relevant COX-2 gene polymorphisms (-765 G>C and +8473 T>C) in gastritis and precancerous lesions susceptibility. After upper GI endoscopy, 130 rapid urease test positive patients with non-ulcer dyspepsia, also showed positivity for H. pylori using modified Geimsa staining and anti-CagA IgG serology were included. All patients and 260 asymptomatic controls were genotyped for COX-2 variations using PCR-RFLP. COX-2 -765 (GC+CC) genotypes, -765 C allele, +8473 CC genotype, +8473 (TC+CC) genotypes, +8473 C allele, and variant haplotypes imparted high risk for gastritis (P = 0.036, OR = 1.82; P = 0.007, 1.92; P = 0.025, OR = 2.13; P = 0.017, OR = 1.80; P = 0.017, OR = 1.45; P = 0.010, OR = 2.40; P = 0.023, OR = 1.50 and P = 0.012, OR = 2.20 folds, respectively). In contrast, COX-2 -765 C allele carriers had low risk for lymphocyte (P = 0.020, OR = 0.35), plasma cell infiltrations (P = 0.016, OR = 0.33), and gastric atrophy (GA) development (P = 0.019, OR = 0.35). In conclusion, COX-2 variant allele/genotype/haplotype carriers may be at high risk for gastritis. However, COX-2 -765 C allele carriers may be at low risk for GA development. 相似文献
124.
Dingcheng Gao Daniel Nolan Kevin McDonnell Linda Vahdat Robert Benezra Nasser Altorki Vivek Mittal 《生物化学与生物物理学报:癌评论》2009
Emerging evidence indicates that bone marrow (BM)-derived endothelial progenitor cells (EPCs) contribute to angiogenesis-mediated growth of certain tumors in mice and human. EPCs regulate the angiogenic switch via paracrine secretion of proangiogenic growth factors and by direct luminal incorporation into sprouting nascent vessels. While the contributions of EPCs to neovessel formation in spontaneous and transplanted tumors and to the metastatic transition have been reported to be relatively low, remarkably, specific EPC ablation in vivo has resulted in severe angiogenesis inhibition and impaired primary and metastatic tumor growth. The existence of a BM reservoir of EPCs, and the selective involvement of EPCs in neovascularization, have attracted considerable interest because these cells represent novel target for therapeutic intervention. In addition, EPCs are also being used as pharmacodynamic surrogate markers for monitoring cancer progression, as well as for optimizing efficacy of anti-angiogenic therapies in the clinic. This review will focus primarily on recent advances and emerging concepts in the field of EPC biology and discuss ongoing debates involving the role of EPCs in tumor neovascularization. For detailed information on the in vitro characterization of EPCs contribution to non-tumor pathologies, the reader is directed towards several excellent reviews and publications [F. Bertolini, Y. Shaked, P. Mancuso and R.S. Kerbel, Nat. Rev., Cancer 6 (2006) 835–845. [1]] [J.M. Hill, T. Finkel and A.A. Quyyumi, Vox Sang. 87 Suppl 2 (2004) 31–37. [2]] [A.Y. Khakoo and T. Finkel, Annu. Rev. Med. 56 (2005) 79–101. [3]] [H.G. Kopp, C.A. Ramos and S. Rafii, Curr. Opin. Hematol. 13 (2006) 175–181. [4]; K.K. Hirschi, D.A. Ingram and M.C. Yoder, Arterioscler. Thromb. Vasc. Biol. 28 (2008) 1584–1595. [5]; F. Timmermans, J. Plum, M.C. Yoder, D.A. Ingram, B. Vandekerckhove and J. Case, J. Cell. Mol. Med. 13 (2009) 87–102. [6]] and reviews by Bertolini, Voest and Yoder in this issue. 相似文献
125.
A. S. Sengar K. S. Thind Bipen Kumar Mittal Pallavi S. S. Gosal 《Plant Growth Regulation》2009,58(2):201-209
In the present study, in vitro selection technique using pathogen culture filtrate of Colletotrichum falcatum Went was employed with the aim to identify associations (if any), between selection at the cellular and plant level for red
rot resistance in sugarcane (Saccharum sp.). Five to eight months old sugarcane calli of genotypes CoJ 88 and CoJ 64 were screened in vitro against pathogen culture
filtrate for two selection cycles. Effect of pathogen culture filtrate on callus survival and/or proliferation was observed
to be directly related to its concentration in the selection media. Calli survived and exhibited further proliferation at
5, 10 and 15% v/v pathogen culture filtrate concentrations whereas, at higher concentrations (20 and 25% v/v) proliferation
was completely inhibited. Shoot regeneration percent was higher in calli selected on 5% pathogen culture filtrate concentration
than those selected on 10 and 15% concentrations. In vivo screening of field transferred somaclones against two pathtypes
(Cf 03 and Cf 08) showed considerable variation for red rot resistance. Somaclones regenerated from resistant and/or tolerant
calli exhibited better resistance than the parental genotypes. The results indicated that in vitro selection for red rot resistance
was effective and expressed when somaclones were screened in the field. This indicated a positive association between in vitro
and in vivo methods of selection for disease resistance in sugarcane. 相似文献
126.
The surface ultrastructure of the gill arches and the gill rakers of an herbivorous fish, Cirrhinus mrigala was investigated by scanning electron microscopy. These structures show significant adaptive modifications associated with the food and feeding ecology of the fish. Closely lying short gill rakers and narrow inter-raker channels on the gill arches are associated to filter and retain food particles. Prominent epithelial protuberances on the gill rakers and the gill arches enable the taste buds, located at their summit, to project well above the surface of the epithelium. This could increase the efficiency of the taste buds in selective sorting of palatable food. Surface specializations of the postlingual organ are recognized adaptive modifications for selecting, trapping or holding food particles. Prominent molariform teeth born on the lower pharyngeal jaw, and the chewing pad opposite it, are associated to work together as an efficient pharyngeal mill. Mucous goblet cells are considered to elaborate mucus secretions to trap, glue and lubricate food particles for their smooth transport for swallowing. 相似文献
127.
128.
Georgi Z. Genchev Morten Källberg Gamze Gürsoy Anuradha Mittal Lalit Dubey Ognjen Perisic Gang Feng Robert Langlois Hui Lu 《Cell biochemistry and biophysics》2009,55(3):141-152
Efficient communication between the cell and its external environment is of the utmost importance to the function of multicellular
organisms. While signaling events can be generally characterized as information exchange by means of controlled energy conversion,
research efforts have hitherto mainly been concerned with mechanisms involving chemical and electrical energy transfer. Here,
we review recent computational efforts addressing the function of mechanical force in signal transduction. Specifically, we
focus on the role of steered molecular dynamics (SMD) simulations in providing details at the atomic level on a group of protein
domains, which play a fundamental role in signal exchange by responding properly to mechanical strain. We start by giving
a brief introduction to the SMD technique and general properties of mechanically stable protein folds, followed by specific
examples illustrating three general regimes of signal transfer utilizing mechanical energy: purely mechanical, mechanical
to chemical, and chemical to mechanical. Whenever possible the physiological importance of the example at hand is stressed
to highlight the diversity of the processes in which mechanical signaling plays a key role. We also provide an overview of
future challenges and perspectives for this rapidly developing field. 相似文献
129.
Rishein Gupta Harsh Vardhan Pragya Srivastava Sudha Salhan Aruna Mittal 《Reproductive biology and endocrinology : RB&E》2009,7(1):84-13
Background
Chlamydial Inclusion membrane proteins (Incs), are involved in biochemical interactions with host cells and infecting Chlamydiae. We have previously reported the role of two Chlamydia trachomatis (CT) Incs, namely IncB and IncC in generating host immunity in CT infected women. Emerging data shows involvement of Inc stimulated CD4 positive T cells in aiding host immunity in infected fertile and infertile women through the secretion of interferon gamma. However the lack of data on the intra-cytokine interplay to these Incs in infected cell milieu prompted us to investigate further. 相似文献130.
Himanshu Gupta M. Aqil R. K. Khar Asgar Ali Aseem Bhatnagar Gaurav Mittal Sanyog Jain 《AAPS PharmSciTech》2009,10(2):540-546
In situ gel-forming systems have drawn much attention of current researchers to overcome the poor bioavailability from the conventional
eye drops. The present work described formulation and pharmacoscintigraphic evaluation of timolol-maleate-loaded chitosan/hydroxy
propyl methyl cellulose (HPMC)-based polymer matrix for enhanced ocular retention. Chitosan and HPMC ratio was optimized and
formulation was characterized for various in vitro parameters. The ocular retention was studied on New Zealand rabbits by gamma scintigraphy, which is a very simple and noninvasive
technique. For scintigraphy study, the drug timolol maleate was radiolabeled 99mTc by direct labeling method using SnCl2·2H2O as reducing agent. The labeling procedure was optimized to get maximum labeling efficiency (>98%). In vitro stability of the radiolabeled drug (99mTc-timolol maleate complex) was checked and it was found to be stable for up to 24 h. Plain drug eliminates rapidly as significant
activity was recorded in kidney and bladder after 2 h of ocular administration. It was evident from the scintigraphic images
and the time–activity curve plotted from the data that the plain drug solution cleared very rapidly from the corneal region
and reached into systemic circulation via nasolachrymal drainage system, as significant activity was recorded in kidney and
bladder after 2 h of ocular administration. Developed formulation cleared at a slow rate and remained at corneal surface for
longer time duration. No radioactivity was observed in systemic circulation after 2 h. Ocular irritation of the developed
formulation was also checked by hen’s egg chorioallantoic membrane test and formulation was found to be practically nonirritant.
The study signified the potential of gamma scintigraphy in evaluation of novel drug delivery systems in a noninvasive manner. 相似文献