Genetic differentiation and diversity analysis of medicinal tree Syzygium cumini (Myrtaceae) from ecologically different regions of India

This study represents the agro-ecological zone wise surveys of molecular variation of important medicinal tree Syzygium cumini Linn. (Jamun) which is native to India. It is used world wide in treatment of diabetes. Despite of its diverse medicinal properties no molecular data is available about the pattern of variation in its natural range. Populations of S. cumini in India are located in different habitats which differ from each other with regard to ecological factors. In this study, random amplified polymorphic DNA (RAPD) markers were used to detect inter and intra levels of genetic variations of sixteen S. cumini genotypes collected from three major agro-ecological zones of India. A total of 220 amplification products were scored of which 87.50 % were polymorphic. The level of polymorphism ranged from 47.69 % to 74.87 % polymorphic bands per population and was correlated with population size. Different measures of diversity: Shannon’s index of phenotypic diversity (I) = 0.451 ± 0.230; Nei’s genetic diversity (h) = 0.300 ± 0.172; effective number of alleles per locus (Ne) = 1.51 ± 0.347; total species diversity (Hsp) = 0.315 ± 0.031 and within population diversity (Hpop) = 0.158 ± 0.104 showed high genetic diversity at species level. Coefficient of genetic differentiation (Gst =0.498; Nm = 0.503) revealed significant genetic differentiation among the populations. Most of the genetic variations are contained among the populations. The results of cluster analysis and principal component analysis (PCA) give only little evidence for an ecotypic differentiation of S. cumini populations. Present genetic structure of population suggests ex situ conservation in seed banks in which seeds from at least five populations need to collected and conserved. Secondly, our study provides practical information to herbal drugs manufactures who use Jamun as a raw material.     

Runoff and drainage water quality from geotextile and gravel pads used in livestock feeding and loafing areas

Geotextile and gravel pads offer a low-cost alternative to concrete for providing all-weather surfaces for cattle and vehicle traffic, and are used in many livestock facilities to minimize mud, runoff and erosion of heavy traffic areas. The objective of this study was to compare different combinations of geotextile and gravel used in heavy livestock traffic areas that minimize the potential for water pollution. Three different pad combinations were constructed in 2.4 x 6-m plots as follows: (i) woven geotextile+100mm of gravel+50mm Dense Grade Aggregate (DGA); (ii) woven geotextile + geoweb+100 mm DGA; and (iii) non-woven geotextile+152 mm of gravel+50mm DGA; (iv) mud lots as control. The third combination was equivalent to one of the base treatments specified by the Kentucky Natural Resource and Conservation Service (NRCS). All treatment combinations were duplicated. Lysimeter pans were installed in four out of eight plots for the collection of leachate or drainage water. Runoff was collected at the lower end of the plots. About 14 kg of beef cattle manure were added evenly to the plots. Rainfall at 50mm/h was applied using rainfall simulators. In the first five of ten experiments, manure was removed from the surface of the pads after each experiment. In the remaining five experiments manure accumulated on the surface of the pads. The effect of pad treatment was significant on the electrical conductivity (EC), total solids (TS), chemical oxygen demand (COD), nitrite (NO2-N), total nitrogen (TN) and total phosphorus (TP) values in surface runoff at the 5% level. Manure removal did not have any significant effect on the nutrient content of runoff or leachate samples except for ammonia (NH4-N) values. Although a mass balance indicated relatively small amounts of organic matter and nutrients were lost by runoff and leaching, the actual contamination level of both runoff and leachate samples were high; TP levels as high as 12 mg/l (5.4 mg/m2) in runoff and nitrate (NO3-N) values as high as 10.8 mg/l (1.6 mg/m2) in leachate were observed.     

Place prioritization for biodiversity conservation using probabilistic surrogate distribution data

We analyse optimal and heuristic place prioritization algorithms for biodiversity conservation area network design which can use probabilistic data on the distribution of surrogates for biodiversity. We show how an Expected Surrogate Set Covering Problem (ESSCP) and a Maximal Expected Surrogate Covering Problem (MESCP) can be linearized for computationally efficient solution. For the ESSCP, we study the performance of two optimization software packages (XPRESS and CPLEX) and five heuristic algorithms based on traditional measures of complementarity and rarity as well as the Shannon and Simpson indices of α‐diversity which are being used in this context for the first time. On small artificial data sets the optimal place prioritization algorithms often produced more economical solutions than the heuristic algorithms, though not always ones guaranteed to be optimal. However, with large data sets, the optimal algorithms often required long computation times and produced no better results than heuristic ones. Thus there is generally little reason to prefer optimal to heuristic algorithms with probabilistic data sets.     

Pygo2 expands mammary progenitor cells by facilitating histone H3 K4 methylation

Recent studies have unequivocally identified multipotent stem/progenitor cells in mammary glands, offering a tractable model system to unravel genetic and epigenetic regulation of epithelial stem/progenitor cell development and homeostasis. In this study, we show that Pygo2, a member of an evolutionarily conserved family of plant homeo domain–containing proteins, is expressed in embryonic and postnatal mammary progenitor cells. Pygo2 deficiency, which is achieved by complete or epithelia-specific gene ablation in mice, results in defective mammary morphogenesis and regeneration accompanied by severely compromised expansive self-renewal of epithelial progenitor cells. Pygo2 converges with Wnt/β-catenin signaling on progenitor cell regulation and cell cycle gene expression, and loss of epithelial Pygo2 completely rescues β-catenin–induced mammary outgrowth. We further describe a novel molecular function of Pygo2 that is required for mammary progenitor cell expansion, which is to facilitate K4 trimethylation of histone H3, both globally and at Wnt/β-catenin target loci, via direct binding to K4-methyl histone H3 and recruiting histone H3 K4 methyltransferase complexes.     

一个1B/1R小麦-黑麦染色体易位的鉴定

本研究对冬小麦品系73(36)9-1的1B/1R易位染色体进行了遗传分析。发现73(36)9-1有一对随体染色体,它的两个亲本矮丰四号及洛夫林10(Lovrin lo)分别有两对和一对随体染色体。观察用矮丰四号回交的F_1,绝大部分花粉母细胞的中期染色体都能正常配对,而用洛夫林10回交的,除了多数产生两个单价体之外,正常配对的情况也能经常看到。同时还发现,73(36)9-1和“中国春”双端体(CSDT)的1BL能很好地配对并形成一个棒状的异形二价体,而它和CSDT 1BS的染色体则主要产生20″+1′+t′的构型,从而证明易位发生在1B染色体的短臂,并且该易位的片段来自黑麦染色体1RL。本文还讨论了该易位发生的可能途径,推断是由于在F_1花粉母细胞中的两个单价体(一个是小麦染色体1B,一个是黑麦染色体1R)同时进行错分裂之后产生的两种端着丝点染色体(1BL和1RL)重新并合形成的,因而冬小麦73(36)9-1可能是一个自发产生的易位系。     

Functional relevance and health benefits of soymilk fermented by lactic acid bacteria

The growing interest of consumers towards nutritionally enriched, and health promoting foods, provoke interest in the eventual development of fermented functional foods. Soymilk is a growing trend that can serve as a low-cost non-dairy alternative with improved functional and nutritional properties. Soymilk acts as a good nutrition media for the growth and proliferation of the micro-organism as well as for their bioactivities. The bioactive compounds produced by fermentation of soymilk with lactic acid bacteria (LAB) exhibit enhanced nutritional values, and several improved health benefits including antihypertensive, antioxidant, antidiabetic, anticancer and hypocholesterolaemic effects. The fermented soymilk is acquiring a significant position in the functional food industry due to its increased techno-functional qualities as well as ensuring the survivability of probiotic bacteria producing diverse metabolites. This review covers the important benefits conferred by the consumption of soymilk fermented by LAB producing bioactive compounds. It provides a holistic approach to obtain existing knowledge on the biofunctional attributes of fermented soymilk, with a focus on the functionality of soymilk fermented by LAB.     

A short note on predicted motifs in the Thaparocleidus wallagonius genome

Thaparocleidus wallagonius is a monogenean parasite and a fish-borne pathogen with a worldwide distribution. The genome for Thaparocleidus wallagonius is known. Therefore, it is of interest to report the DNA motif analysis data in the 18S rDNA of Thaparocleidus wallagonius collected from the fish Wallago attu in India. This data forms a framework for an in-depth analysis of the parasite biology and development, immune evasion strategies, virulence and long-term survival within the definitive host.     

An unusual presentation of filariasis: a case report

BACKGROUND: Filariasis and its consequences are a major health problem in tropical countries, including the Indian subcontinent. Despite its high incidence, it is unusual to find microfilaria in fine needle aspiration cytology (FNAC) smears. We present a case of subcutaneous firm to cystic swelling, aspiration of which revealed a large number of microfilaria. CASE: A 30-year-old man presented with a chain of intermittent, firm swellings in both arms. FNAC of the swellings revealed a large number of 4 microfilariae with associated giant cell reaction and inflammatory cell-like eosinophils. CONCLUSION: Besides the documented usual mode of presentation of filarial infection, it can present in an atypical manner, so careful examination of aspirates from the subcutaneous swellings, especially in filariasis endemic zones, is very important.