Comparative life history and fecundity of Helicoverpa armigera (Hubner) (Lepidoptera: Noctuidae) on different soybean varieties

The effect of different soybean varieties ( Glycine max 356, M4, M7, M9, Clark, Sahar, JK, BP, Williams, L17, Zane, Gorgan3 and DPX) on the life history and fecundity of the gram pod borer Helicoverpa armigera (Hubner) (synonym Heliothis armigera (Hubner), also known as the American or African bollworm) was determined at 25 ± 1°C, 65 ± 5% r.h. and a light : dark cycle of 16:8 h. The larval period ranged 17.30 to 26.20 days on M7 and L17, respectively. The longest development time was on L17, BP and Sahar (42.71, 40.29 and 39.20 days, respectively) and the shortest was on M7, M9, Williams and Clark (34.21, 36.06, 36.60 and 36.82 days, respectively). The development index of overall immature stages varied from 1.39 to 2.41, with the minimum on L17 and BP and the maximum on M7. The highest daily fecundity and total fecundity (118.92 and 582.70 eggs, respectively) and the lowest (37.88 and 177.10 eggs, respectively) were observed on DPX and 356, respectively. Cluster analysis of the biological parameters of H. armigera on different soybean varieties demonstrated that BP, Sahar and L17 were partially resistant to H. armigera . Knowledge of the extent of susceptibility or resistance of crop varieties and biology of a pest on that crop are fundamental components of integrated pest management (IPM) programs for many crops. Such information can help to detect and monitor pest infestation, variety selection and crop breeding.     

Rapid suppression and sustained activation of distinct cortical regions for a delayed sensory-triggered motor response

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Design and validation of a new method to detect and quantify residual host cell DNA in human recombinant erythropoietin (rEPO)

During the purification of human recombinant erythropoietin (rEPO) from host cells, residual DNA may remain in final products. This contamination is a risk factor for patients and may result in the inactivation of some tumor suppressor genes or activation of oncogenes if its concentration is more than the standard defined by WHO. Based on WHO’s criteria, acceptable level of residual DNA in biopharmaceuticals is less than 10–100?pg/dose. In this study, we have designed a sensitive and specific quantitative real-time polymerase chain reaction (PCR) assay for the detection of residual DNA in human rEPO products. All reported sequences of CHO’s GAPDH gene were retrieved from GenBank, and a multiple alignment was performed using Mega 6 software to find conserved regions of the gene. Primers and probe were designed by AlleleID7 software for the highly conserved region. Quantitative real-time PCR showed an R² value more than 0.99 and the efficiency equal to 101% indicating a highly accurate and efficiency of the reaction, respectively. Based on the standard curve, the limit of detection of the assay was determined to be 10?copies/µL (0.00967?fg/µL). In addition, the inter- and intra-assay of the test were determined to be 1.14% and 0.65%, respectively, which are in acceptable range according to the WHO’s guidelines.     

Galaxy-ML: An accessible,reproducible, and scalable machine learning toolkit for biomedicine

Supervised machine learning is an essential but difficult to use approach in biomedical data analysis. The Galaxy-ML toolkit (https://galaxyproject.org/community/machine-learning/) makes supervised machine learning more accessible to biomedical scientists by enabling them to perform end-to-end reproducible machine learning analyses at large scale using only a web browser. Galaxy-ML extends Galaxy (https://galaxyproject.org), a biomedical computational workbench used by tens of thousands of scientists across the world, with a suite of tools for all aspects of supervised machine learning.

This is a PLOS Computational Biology Software paper.

     

Exogenous Methyl Jasmonate Treatment Induces Defense Response Against Fusarium culmorum in Wheat Seedlings

Journal of Plant Growth Regulation - The Fusarium crown and root rot (FCRR) pathogen Fusarium culmorum (Fc) is a hemibiotrophic pathogen, with a short biotrophic phase preceding necrotropism....