Short-term climatic trends affect the temporal variability of macroinvertebrates in California 'Mediterranean' streams

1. Long‐term studies in ecology are essential for understanding natural variability and in interpreting responses to disturbances and human perturbations. We assessed the long‐term variability, stability and persistence of macroinvertebrate communities by analysing data from three regions in northern California with a mediterranean‐climate. During the study period, precipitation either increased or decreased, and extreme drought events occurred in each region. 2. Temporal trends in precipitation resulted in shifts from ‘dry‐year’ communities, dominated by taxa adapted to no or low flow, to ‘wet‐year’ communities dominated by taxa adapted to high flows. The abundance of chironomid larvae was an important driver of community change. Directional change in community composition occurred at all sites and was correlated with precipitation patterns, with more dramatic change occurring in smaller streams. 3. All communities exhibited high to moderate persistence (defined by the presence/absence of a species) and moderate to low stability (defined by changes in abundance) over the study period. Stability and persistence were correlated with climatic variation (precipitation and El Niño Southern Oscillation) and stream size. Stability and persistence increased as a result of drought in small streams (first‐order) but decreased in larger streams (second‐ and third‐order). Communities from the dry season were less stable than those from the wet‐season. 4. This study demonstrates the importance of long‐term studies in capturing the effects of and recovery from rare events, such as the prolonged and extreme droughts considered here.     

Microsatellite loci in the eastern form of the giant freshwater prawn (Macrobrachium rosenbergii)

Six microsatellite loci were identified and characterized in the eastern form of the widespread and commercially important giant freshwater prawn (Macrobrachium rosenbergii). The loci were detected by randomly screening for dinucleotide and trinucleotide repeat units within a partial genomic library developed for the species. In a sample of 29 prawns, number of alleles and heterozygosity per locus ranged from 12 to 18 and from 0.66 to 0.90, respectively. These markers provide powerful tools for the conservation and management of wild stocks, the improvement of cultured stocks of M. rosenbergii, and for investigating evolutionary processes underlying genetic divergence among populations.     

Large-scale identification of polymorphic microsatellites using an <Emphasis Type="Italic">in silico</Emphasis> approach

Background  

Simple Sequence Repeat (SSR) or microsatellite markers are valuable for genetic research. Experimental methods to develop SSR markers are laborious, time consuming and expensive. In silico approaches have become a practicable and relatively inexpensive alternative during the last decade, although testing putative SSR markers still is time consuming and expensive. In many species only a relatively small percentage of SSR markers turn out to be polymorphic. This is particularly true for markers derived from expressed sequence tags (ESTs). In EST databases a large redundancy of sequences is present, which may contain information on length-polymorphisms in the SSR they contain, and whether they have been derived from heterozygotes or from different genotypes. Up to now, although a number of programs have been developed to identify SSRs in EST sequences, no software can detect putatively polymorphic SSRs.     

Mental practice-based rehabilitation training to improve arm function and daily activity performance in stroke patients: a randomized clinical trial

Background  

Over 50% of patients with upper limb paresis resulting from stroke face long-term impaired arm function and ensuing disability in daily life. Unfortunately, the number of effective treatments aimed at improving arm function due to stroke is still low. This study aims to evaluate a new therapy for improving arm function in sub-acute stroke patients based on mental practice theories and functional task-oriented training, and to study the predictors for a positive treatment result. It is hypothesized that a six-week, mental practice-based training program (additional to regular therapy) targeting the specific upper extremity skills important to the individual patient will significantly improve both arm function and daily activity performance, as well as being cost effective.     

Global climate patterns explain range-wide synchronicity in survival of a migratory seabird

To predict the impact of climate change over the whole species distribution range, comparison of adult survival variations over large spatial scale is of primary concern for long-lived species populations that are particularly susceptible to decline if adult survival is reduced. In this study, we estimated and compared adult survival rates between 1989 and 1997 of six populations of Cory's shearwater ( Calonectris diomedea ) spread across 4600 km using capture–recapture models. We showed that mean annual adult survival rates are different among populations along a longitudinal gradient and between sexes. Variation in adult survival is synchronized among populations, with three distinct groups: (1) both females and males of Corsica, Tremiti, and Selvagem (annual survival range 0.88–0.96); (2) both females and males of Frioul and females from Crete (0.82–0.92); and (3) both females and males of Malta and males from Crete (0.74–0.88). The total variation accounted for by the common pattern of variation is on average 71%, suggesting strong environmental forcing. At least 61% of the variation in survival is explained by the Southern Oscillation Index fluctuations. We suggested that Atlantic hurricanes and storms during La Niña years may increase adult mortality for Cory's shearwater during winter months. For long-lived seabird species, variation in adult survival is buffered against environmental variability, although extreme climate conditions such as storms significantly affect adult survival. The effect of climate at large spatial scales on adult survival during the nonbreeding period may lead to synchronization of variation in adult survival over the species' range and has large effects on the meta-population trends. One can thus worry about the future of such long-lived seabirds species under the predictions of higher frequency of extreme large-scale climatic events.     

The genus Teliocrinus (Crinoidea,Echinodermata): a key taxon among pentacrinid stalked crinoids

The main characters of the stalked crinoids of the family Pentacrinitidae attributed to the genus Teliocrinus are re‐evaluated from a quantitative study of phenotype variation, new observations on arm and stalk articulations, and observation of ontogenetic trends. All of the specimens collected in the northern Indian Ocean belong to the same species, i.e. Teliocrinus springeri (Clark, 1909). However, two phenotypes living at different depths remain valid as subspecies: Teliocrinus springeri springeri (Clark, 1909) and Teliocrinus springeri liliaceus (Clark, 1909). Teliocrinus shares several ontogenetic trends with Endoxocrinus, especially in nonfunctional brachial articulations and stalk symplexies. Its assignment to the Diplocrininae is confirmed. A discussion of its affinities with pentacrinid fossil genera in which the crown is well preserved suggests that Diplocrininae could have first appeared during the Lower Cretaceous. A shortening of brachitaxes and a paedomorphic trend of stalk symplexies are the main other evolutionary traits. Nonfunctional articulations are frequently found at the paedomorphic pole of the heterochronic gradient, without clear derived characters. Classification of pentacrinids mainly based on such symplesiomorphy or paedomorphic characters must be definitively abandoned. However, in post‐Palaeozoic stalked crinoids the scarcity of well‐preserved fossils, the high frequency of paedomorphy, and convergent adaptive characters makes phylogenetic reconstruction only based on morphological characters very difficult and speculative. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 22–39.     

Comparison of linkage disequilibrium and haplotype diversity on macro- and microchromosomes in chicken

Background

Toll like receptors (TLR) play the central role in the recognition of pathogen associated molecular patterns (PAMPs). Mutations in the TLR1, TLR2 and TLR4 genes may change the ability to recognize PAMPs and cause altered responsiveness to the bacterial pathogens.

Results

The study presents association between TLR gene mutations and increased susceptibility to Mycobacterium avium subsp. paratuberculosis (MAP) infection. Novel mutations in TLR genes (TLR1- Ser150Gly and Val220Met; TLR2 – Phe670Leu) were statistically correlated with the hindrance in recognition of MAP legends. This correlation was confirmed subsequently by measuring the expression levels of cytokines (IL-4, IL-8, IL-10, IL-12 and IFN-γ) in the mutant and wild type moDCs (mocyte derived dendritic cells) after challenge with MAP cell lysate or LPS. Further in silico analysis of the TLR1 and TLR4 ectodomains (ECD) revealed the polymorphic nature of the central ECD and irregularities in the central LRR (leucine rich repeat) motifs.

Conclusion

The most critical positions that may alter the pathogen recognition ability of TLR were: the 9^th amino acid position in LRR motif (TLR1–LRR10) and 4^th residue downstream to LRR domain (exta-LRR region of TLR4). The study describes novel mutations in the TLRs and presents their association with the MAP infection.     

Do synovial biopsies help to support evidence for involvement of innate immunity in the immunopathology of Beh?et's disease?

Behçet's disease is a complex vasculitis of unknown etiology. Abundant neutrophils suggest the involvement of innate immunity. Cytokines are skewed to the T-helper-1 pattern. Few sterile organs are easily accessible for analysis in Behçet's disease. Cañete and coworkers identify inflamed joints as a feasible model and suggest the involvement of innate immunity in Behçet's disease.