Validation of outlier loci through replication in independent data sets: a test on Arabis alpina

Outlier detection and environmental association analysis are common methods to search for loci or genomic regions exhibiting signals of adaptation to environmental factors. However, a validation of outlier loci and corresponding allele distribution models through functional molecular biology or transplant/common garden experiments is rarely carried out. Here, we employ another method for validation, namely testing outlier loci in specifically designed, independent data sets. Previously, an outlier locus associated with three different habitat types had been detected in Arabis alpina. For the independent validation data set, we sampled 30 populations occurring in these three habitat types across five biogeographic regions of the Swiss Alps. The allele distribution model found in the original study could not be validated in the independent test data set: The outlier locus was no longer indicative of habitat‐mediated selection. We propose several potential causes of this failure of validation, of which unaccounted genetic structure and technical issues in the original data set used to detect the outlier locus were most probable. Thus, our study shows that validating outlier loci and allele distribution models in independent data sets is a helpful tool in ecological genomics which, in the case of positive validation, adds confidence to outlier loci and their association with environmental factors or, in the case of failure of validation, helps to explain inconsistencies.     

Identification of a 70 kD protein with sequence homology to squid neurofilament protein in glial cells of the leech CNS

A monoclonal antibody G39, generated against a protein extract of leech central nervous system, labels specific cell types in adult, embryonic, and regenerating preparations. The antibody stained glial cells, microglial cells, and connective tissue cells, but nor neurons or muscle on cryosections. The staining pattern resembled that of an intracellular network. Affinity purification of the antigen revealed a 70 kD protein. Peptide sequencing showed significant homology of a stretch of 15 amino acids to squid neural filament protein. The same mAb G39 delineated glial cells as they formed during development of the CNS and showed that the giant neuropil glial cells appear before those in the packets. The antigen recognized by mAb G39 represents a nonneuronal intermediate filament of the leech Hirudo medicinalis found in various cell-types such as glia, microglia, and some cells of the connective tissue. 1994 John Wiley & Sons, Inc.     

Preclinical Efficacy and Safety of a Human Embryonic Stem Cell-Derived Midbrain Dopamine Progenitor Product,MSK-DA01

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Variation in rates of leaf abscission between plants may affect the distribution patterns of sessile insects

Summary At Sand Lake, Leon County, Florida, mines of Stilbosis quadricustatella, a leaf-mining moth, occur on sand live oak trees (Quercus geminata) over a broad range of densities. Some trees have fewer than 2% of their leaves mined (lightly infested), others up to 70% (heavily infested). Similar levels of infestation are maintained on the same trees year after year. There are no significant negative correlations of miner density per tree with any mortality factor that might explain miner preferences for certain trees. Nor is there a positive correlation with host leaf quality as measured by foliar nitrogen or by total or individual amino acid concentrations of host leaves. Egg-transfer experiments showed that larvae from eggs transferred to lightly infested trees were more likely to be killed by leaf abscission than were those that were transferred to and developed on heavily infested trees. This is the first demonstration that variation in rates of leaf abscission could be an important cause of the observed distribution pattern of sessile insects between conspecific host plants.     

Mouse Genital Ridges in Organ Culture: The Effects of Temperature on Maturation and Experimental Induction of Teratocarcinogenesis

Abstract. Testicular teratomas can be induced experimentally by grafting genital ridges from male mouse fetuses to the testes of adults. A high incidence of teratomas occurs in genital ridges grafted to scrotal testes, but not in genital ridges grafted to testes maintained at body temperature. Genital ridges were cultured at 32° C or 37° C prior to grafting to the testes to determine the effect of temperature on the incidence of teratomas. Genital ridges cultured at 32° C for two or three days produced a high incidence of teratomas when grafted to the testes, in contrast to genital ridges cultured at 37° C for two or three days which produced a low incidence. Histologically, genital ridges cultured at 32° C contained disorganized testicular tubules and were retarded in development. Genital ridges continued to develop in vitro at 37° C, but were histologically different from genital ridges maturing in the fetus. Genital ridges cultured at 32° C for 10 to 12 days did not develop teratomas in vitro or after grafting to the testes. Further characterization of temperature effects in vitro may lead to a better understanding of teratocarcinogenesis in vivo.