Medicago truncatula Natural Resistance-Associated Macrophage Protein1 Is Required for Iron Uptake by Rhizobia-Infected Nodule Cells

Iron is critical for symbiotic nitrogen fixation (SNF) as a key component of multiple ferroproteins involved in this biological process. In the model legume Medicago truncatula, iron is delivered by the vasculature to the infection/maturation zone (zone II) of the nodule, where it is released to the apoplast. From there, plasma membrane iron transporters move it into rhizobia-containing cells, where iron is used as the cofactor of multiple plant and rhizobial proteins (e.g. plant leghemoglobin and bacterial nitrogenase). MtNramp1 (Medtr3g088460) is the M. truncatula Natural Resistance-Associated Macrophage Protein family member, with the highest expression levels in roots and nodules. Immunolocalization studies indicate that MtNramp1 is mainly targeted to the plasma membrane. A loss-of-function nramp1 mutant exhibited reduced growth compared with the wild type under symbiotic conditions, but not when fertilized with mineral nitrogen. Nitrogenase activity was low in the mutant, whereas exogenous iron and expression of wild-type MtNramp1 in mutant nodules increased nitrogen fixation to normal levels. These data are consistent with a model in which MtNramp1 is the main transporter responsible for apoplastic iron uptake by rhizobia-infected cells in zone II.SNF is carried out by the endosymbiosis between legumes and diazotrophic bacteria called rhizobia (van Rhijn and Vanderleyden, 1995). Detection of rhizobial nodulation (Nod) factors by the legume plant results in curling of a root hair around the rhizobia and development of an infection thread that will deliver the rhizobia to the developing root nodule primordium, which is also triggered by Nod factors (Kondorosi et al., 1984; Brewin, 1991; Oldroyd, 2013). Rhizobia are eventually released into the cytoplasm of host plant cells via endocytosis, resulting in an organelle-like structure known as the symbiosome, which consists of bacteria surrounded by a plant membrane called the symbiosome membrane (SM; Roth and Stacey, 1989; Vasse et al., 1990). Rhizobia within symbiosomes eventually differentiate into nitrogen-fixing bacteroids that produce and export ammonium to the plant for assimilation (Vasse et al., 1990).Two main developmental programs for nodulation have been described (Sprent, 2007). In the determinate type, e.g. in soybean (Glycine max), the nodule meristem is active only transiently, which gives rise to a spherical nodule. In the indeterminate nodules, e.g. in alfalfa (Medicago sativa) and pea (Pisum sativum), the meristem(s) remain active for much longer, resulting in cylindrical and/or branched nodules of indeterminate morphology. Indeterminate nodules can be divided in spatiotemporal zones that facilitate the study of the nodulation process. At least four zones are observed in a mature indeterminate nodule (Vasse et al., 1990). Zone I is the meristematic region that drives nodule growth. In zone II, rhizobia are released from the infection thread and differentiate into bacteroids. Zone III is the site of nitrogen fixation. Finally, Zone IV is the senescence zone, where bacteroids are degraded and nutrients are recycled. Some authors describe two more zones: the interzone, a transition zone between zones II and III (Vasse et al., 1990; Roux et al., 2014), and zone V, where saprophytic rhizobia live on the nutrients released by senescent cells (Timmers et al., 2000).Nodulation and nitrogen fixation are tightly regulated processes (for review, see Oldroyd, 2013; Udvardi and Poole, 2013; Downie, 2014) and require a relatively large supply of nutrients from the host: photosynthates, macronutrients such as phosphate and sulfate, amino acids, at least prior to nitrogen fixation, and metal micronutrients (Udvardi and Poole, 2013). Among the latter, iron is one of the most critical (Brear et al., 2013; González-Guerrero et al., 2014). The activity of some of the most abundant and important enzymes in SNF directly depends on iron as cofactor. Nitrogenase, the enzyme directly responsible for nitrogen fixation, needs iron-sulfur clusters and an iron-molybdenum cofactor to reduce N₂ (Miller et al., 1993). The hemoprotein leghemoglobin, which controls O₂ levels in the nodule (Ott et al., 2005), represents around 20% of total nodule protein (Appleby, 1984). Similarly, different types of superoxide dismutase, including an Fe-superoxide dismutase, control the free radicals produced during SNF (Rubio et al., 2007). Other ferroproteins are involved in energy transduction and recycling related to the nitrogen fixation process (Ruiz-Argüeso et al., 1979; Preisig et al., 1996).Despite its importance, iron is a growth-limiting nutrient for plants in most soils (Grotz and Guerinot, 2006), especially in alkaline soils. As a result, iron deficiency is prevalent in plants and hampers crop production and human health (Grotz and Guerinot, 2006; Mayer et al., 2008). This is even more so when legumes are nodulated (Terry et al., 1991; Tang et al., 1992). The relatively high iron demand of nodules can trigger the iron deficiency response, i.e. increase in iron reductase activities in the root epidermis and acidification of the surrounding soil (Terry et al., 1991; Andaluz et al., 2009). Consequently, knowing how iron homeostasis is maintained in nodulated legumes, including how this micronutrient is delivered to the nodule, is important for understanding and improving SNF.Taking advantage of state-of-the-art metal visualization methods, the pathway for iron delivery to the nodule has been elucidated (Rodríguez-Haas et al., 2013). Synchrotron-based x-ray fluorescence studies on Medicago truncatula indeterminate nodules indicate that most of the iron is delivered by the vasculature to the apoplast of zone II. In zone III, iron is mostly localized within bacteroids. Therefore, a number of transporters must exist that move iron through the plasma membrane of plant cells and the SM of infected cells. Several transporters have been hypothesized to mediate iron transport through the SM. Soybean Divalent Metal Transporter1 (GmDMT1) is a nodule-induced Natural Resistance-Associated Macrophage Protein (Nramp) that was found in the soybean SM using specific antibodies (Kaiser et al., 2003). However, biochemical studies on Nramp transporters suggest that they transport substrates into the cytosol (Nevo and Nelson, 2006), rather than outwards or into symbiosomes. More recently, the study of stationary endosymbiont nodule1 (sen1) mutants in Lotus japonicus indicated that SEN1, a yeast (Saccharomyces cerevisiae) Cross Complements CSG1/Arabidopsis (Arabidopsis thaliana) Vacuolar Iron Transporter1 homolog, could play a role in delivering iron across the SM (Hakoyama et al., 2012), albeit this is merely based on the mutant plant phenotype and the role of members of this family in other organisms.Very little is known about the molecular identity of transporters that mediate iron uptake from the nodule apoplast. Based on known plant metal transporters and their biochemistry, the most likely candidates are members of the Nramp and Zinc-Regulated Transporter1, Iron-Regulated Transporter1-Like Protein (ZIP) families, because these can transport divalent metals into the cytosol (Vert et al., 2002; Nevo and Nelson, 2006). Moreover, given that the expression of at least one Nramp transporter (GmDMT1) is activated by nodulation (Kaiser et al., 2003), it is possible that members of this family might mediate iron uptake into rhizobia-containing cells. Nramp transporters are ubiquitous divalent transition metal importers (Nevo and Nelson, 2006). Phenotypical and electrophysiological studies indicate that they have a wide range of possible biological (Fe²⁺, Mn²⁺, Zn²⁺, Cu²⁺, Co²⁺, and Ni²⁺) and nonbiological (Pb²⁺ and Cd²⁺) substrates (Belouchi et al., 1997; Curie et al., 2000; Thomine et al., 2000; Mizuno et al., 2005; Rosakis and Köster, 2005; Cailliatte et al., 2009). In plants, Nramp transporters have been associated with a number of biological roles, such as Fe²⁺ and Mn²⁺ uptake from soil (Curie et al., 2000; Cailliatte et al., 2010), Mn²⁺ long-distance trafficking (Yamaji et al., 2013), metal remobilization during germination (Lanquar et al., 2005), Cd²⁺ and Ni²⁺ tolerance (Mizuno et al., 2005; Cailliatte et al., 2009), and the immune response (Segond et al., 2009), in addition to participating in SNF (Kaiser et al., 2003).In this study, M. truncatula MtNramp1 (Medtr3g088460) was identified as the Nramp transporter gene expressed at the highest levels in nodules. MtNramp1 protein was localized in the plasma membrane of nodule cells in zone II, where the expression reached its maximum. Its role in iron uptake and its importance for SNF were established using a loss-of-function mutant, nramp1-1. This work adds to our understanding of how apoplastic metals are imported into nodule cells.     

白色生物技术在可持续大规模化学生产中的应用

目前几乎所有有机化学品和塑料是从原油和天然气中生产的, 而生物技术的应用使得利用可再生资源进行大规模化工生产成为可能。以下主要综述了白色生物技术, 即利用细菌、酵母或酶将可发酵糖转化为特定的化学产品的技术。白色生物技术极大节省了不可再生能源的消耗, 减少了温室气体的排放。在有利条件下, 如果化工生产中相关技术有了发展并且可以成功以木质纤维素为原料, 那么到2050年不可再生能源的消耗将减少将近2/3 (67%)。欧洲（EU-25）地区的分析表明, 白色生物技术相关的用地在未来几年的欧洲不会受到制约, 尤其是有大量闲置资源的东欧。另外, 虽然原则上可以在白色生物技术中使用自然的细菌和酶, 但是很多专家认为, 利用经遗传改造生物体(GMO)可以达到高产量、高浓度、高效率, 这对实现经济活力是必要的。值得注意的是, 目前并不是所有的重组基因和其他物种间的相互作用所带来的后果都可预见, 因此化工生产释放的GMOs的安全失活和处理非常重要, 但是如果采取足够的预防措施, 在白色生物技术中应用GMOs的风险是可以控制的。我们认为, 生物生产过程的技术突破、下游生产过程的控制、化石燃料的高价格、可发酵糖的低价获得是生物质化学产业发展中的关键因素, 这4个因素及其他伴随策略是发展整体白色生物技术的要求。     

Plant metabolomics reveals conserved and divergent metabolic responses to salinity

New metabolic profiling technologies provide data on a wider range of metabolites than traditional targeted approaches. Metabolomic technologies currently facilitate acquisition of multivariate metabolic data using diverse, mostly hyphenated, chromatographic detection systems, such as GC-MS or liquid chromatography coupled to mass spectrometry, Fourier-transformed infrared spectroscopy or NMR-based methods. Analysis of the resulting data can be performed through a combination of non-supervised and supervised statistical methods, such as independent component analysis and analysis of variance, respectively. These methods reduce the complex data sets to information, which is relevant for the discovery of metabolic markers or for hypothesis-driven, pathway-based analysis. Plant responses to salinity involve changes in the activity of genes and proteins, which invariably lead to changes in plant metabolism. Here, we highlight a selection of recent publications in the salt stress field, and use gas chromatography time-of-flight mass spectrometry profiles of polar fractions from the plant models, Arabidopsis thaliana, Lotus japonicus and Oryza sativa to demonstrate the power of metabolite profiling. We present evidence for conserved and divergent metabolic responses among these three species and conclude that a change in the balance between amino acids and organic acids may be a conserved metabolic response of plants to salt stress.     

Invasion status of Florida bass Micropterus floridanus (Lesueur, 1822) in South Africa

Largemouth bass Micropterus salmoides are a popular North American angling species that was introduced into South Africa in 1928. To enhance the largemouth bass fisheries, Florida bass Micropterus floridanus were introduced into KwaZulu Natal, South Africa, in 1980. Knowledge on the status of M. floridanus in South Africa is required, because it lives longer and reaches larger sizes than M. salmoides, which may result in heightened impacts on native biota. Because M. floridanus are morphologically similar, but genetically distinct from M. salmoides, the distribution of this species was assessed by genetically screening 185 Micropterus sp. individuals sampled from 20 localities across South Africa using the mitochondrial ND2 gene. Individuals with mitochondrial DNA matching M. salmoides were recovered from 16 localities, whereas M. floridanus mitochondrial DNA was recovered from 13 localities. At nine localities (45%), the mitochondrial DNA of both species was detected. These results demonstrate M. floridanus dispersal to multiple sites across South Africa.