Methanogen communities and Bacteria along an ecohydrological gradient in a northern raised bog complex

Mires forming an ecohydrological gradient from nutrient-rich, groundwater-fed mesotrophic and oligotrophic fens to a nutrient-poor ombrotrophic bog were studied by comparing potential methane (CH(4)) production and methanogenic microbial communities. Methane production was measured from different depths of anoxic peat and methanogen communities were detected by detailed restriction fragment length polymorphism (RFLP) analysis of clone libraries, sequencing and phylogenetic analysis. Potential CH(4) production changed along the ecohydrological gradient with the fens displaying much higher production than the ombrotrophic bog. Methanogen diversity also decreased along the gradient. The two fens had very similar diversity of methanogenic methyl-coenzyme M reductase gene (mcrA), but in the upper layer of the bog the methanogen diversity was strikingly lower, and only one type of mcrA sequence was retrieved. It was related to the Fen cluster, a group of novel methanogenic sequences found earlier in Finnish mires. Bacterial 16S rDNA sequences from the fens fell into at least nine phyla, but only four phyla were retrieved from the bog. The most common bacterial groups were Deltaproteobacteria, Verrucomicrobia and Acidobacteria.     

Methane-Oxidizing Bacteria in a Finnish Raised Mire Complex: Effects of Site Fertility and Drainage

Methane-oxidizing bacteria (MOB) are the only biological sinks for methane (CH₄). Drainage of peatlands is known to decrease overall CH₄ emission, but the effect on MOB is unknown. The objective of this work was to characterize the MOB community and activity in two ecohydrologically different pristine peatland ecosystems, a fen and a bog, and their counterparts that were drained in 1961. Oligotrophic fens are groundwater-fed peatlands, but ombrotrophic bogs receive additional water and nutrients only from rainwater. The sites were sampled in August 2003 down to 10 cm below the water table (WT), and cores were divided into 10-cm subsamples. CH₄ oxidation was measured by gas chromatography (GC) to characterize MOB activity. The MOB community structure was characterized by polymerase chain reaction–denaturing gradient gel electrophoresis (DGGE) and sequencing methods using partial pmoA and mmoX genes. The highest CH₄ oxidation rates were measured from the subsamples 20–30 and 30–40 cm above WT at the pristine oligotrophic fen (12.7 and 10.5 μmol CH₄ dm⁻³ h⁻¹, respectively), but the rates decreased to almost zero in the vicinity of WT. In the pristine ombrotrophic bog, the highest oxidation rate at 0–10 cm was lower than in the fen (8.10 μmol CH₄ dm⁻³ h⁻¹), but in contrast to the fen, oxidation rates of 4.5 μmol CH₄ dm⁻³ h⁻¹ were observed at WT and 10 cm below WT. Drainage reduced the CH₄ oxidation rates to maximum values of 1.67 and 5.77 μmol CH₄ dm⁻³ h⁻¹ at 30–40 and 20–30 cm of the fen and bog site, respectively. From the total of 13 pmoA-derived DGGE bands found in the study, 11, 3, 6, and 2 were observed in the pristine fen and bog and their drained counterparts, respectively. According to the nonmetric multidimensional scaling of the DGGE banding pattern, the MOB community of the pristine fen differed from the other sites. The majority of partial pmoA sequences belonged to type I MOB, whereas the partial mmoX bands that were observed only in the bog sites formed a distinct group relating more to type II MOB. This study indicates that fen and bog ecosystems differ in MOB activity and community structure, and both these factors are affected by drainage.     

Replicase complex genes of Semliki Forest virus confer lethal neurovirulence

Semliki Forest virus (SFV) is a mosquito-transmitted pathogen of small rodents, and infection of adult mice with SFV4, a neurovirulent strain of SFV, leads to lethal encephalitis in a few days, whereas mice infected with the avirulent A7(74) strain remain asymptomatic. In adult neurons, A7(74) is unable to form virions and hence does not reach a critical threshold of neuronal damage. To elucidate the molecular mechanisms of neurovirulence, we have cloned and sequenced the entire 11,758-nucleotide genome of A7(74) and compared it to the highly neurovirulent SFV4 virus. We found several sequence differences and sought to localize determinants conferring the neuropathogenicity by using a panel of chimeras between SFV4 and a cloned recombinant, rA774. We first localized virulence determinants in the nonstructural region by showing that rA774 structural genes combined with the SFV4 nonstructural genome produced a highly virulent virus, while a reciprocal recombinant was asymptomatic. In addition to several amino acid mutations in the nonstructural region, the nsp3 gene of rA774 displayed an opal termination codon and an in-frame 21-nucleotide deletion close to the nsp4 junction. Replacement in rA774 of the entire nsp3 gene with that of SFV4 reconstituted the virulent phenotype, whereas an arginine at the opal position significantly increased virulence, leading to clinical symptoms in mice. Completion of the nsp3 deletion in rA774 did not increase virulence. We conclude that the opal codon and amino acid mutations other than the deleted residues are mainly responsible for the attenuation of A7(74) and that the attenuating determinants reside entirely in the nonstructural region.     

Responses of phenology and biomass production of boreal fens to climate warming under different water‐table level regimes

Climate change affects peatlands directly through increased air temperatures and indirectly through changes in water‐table level (WL). The interactions of these two still remain poorly known. We determined experimentally the separate and interactive effects of temperature and WL regime on factors of relevance for the inputs to the carbon cycle: plant community composition, phenology, biomass production, and shoot:root allocation in two wet boreal sedge‐dominated fens, “southern” at 62°N and “northern” at 68°Ν. Warming (1.5°C higher average daily air temperature) was induced with open‐top chambers and WL drawdown (WLD; 3–7 cm on average) by shallow ditches. Total biomass production varied from 250 to 520 g/m², with belowground production comprising 25%–63%. Warming was associated with minor effects on phenology and negligible effects on community composition, biomass production, and allocation. WLD clearly affected the contribution of different plant functional types (PFTs) in the community and the biomass they produced: shrubs benefited while forbs and mosses suffered. These responses did not depend on the warming treatment. Following WLD, aboveground biomass production decreased mainly due to reduced growth of mosses in the southern fen. Aboveground vascular plant biomass production remained unchanged but the contribution of different PFTs changed. The observed changes were also reflected in plant phenology, with different PFTs showing different responses. Belowground production increased following WLD in the northern fen only, but an increase in the contributions of shrubs and forbs was observed in both sites, while sedge contribution decreased. Moderate warming alone seems not able to drive significant changes in plant productivity or community composition in these wet ecosystems. However, if warming is accompanied by even modest WL drawdown, changes should be expected in the relative contribution of PFTs, which could lead to profound changes in the function of fens. Consequently, hydrological scenarios are of utmost importance when estimating their future function.     

Actinobacteria community structure in the peat profile of boreal bogs follows a variation in the microtopographical gradient similar to vegetation

Background and aims

Boreal mires are globally important carbon stores. In nutrient poor mires, i.e. bogs, vegetation is highly structured between hydrologically different microforms: hummocks, lawns and hollows. We studied whether the vegetation structure in four boreal bogs is reflected in the actinobacterial decomposer communities.

Methods

Vegetation was determined by projection cover of plant species. Actinobacteria were detected from peat profiles at depths of 0–20, 20–40 and 40–60 cm by molecular methods. The data was analysed by a hierarchical set of ordinations.

Results

The inter-bog variation in plant communities was insignificant, while the intra-bog differences (microforms) at each bog were highly significant. This variation was reflected in actinobacteria communities in the two upper peat layers. The deepest peat layer (40–60 cm) showed some inter-bog differences, possibly due to the different history of the bogs.

Conclusions

Our results show that the actinobacteria communities reflect the variation in bog vegetation, which in turn is tied to hydrological conditions. The possible alterations in the water level caused by changing climate are likely to cause predictable changes in vegetation and microbial communities in bog ecosystems.     

Environmental control and spatial structures in peatland vegetation

Question: What are the relative influences of environment and space in structuring the plant composition in a peatland complex? Location: Lakkasuo, southern boreal zone, Finland. Method: We used principal coordinates of neighbour matrices (PCNM) to model spatial structures in the plant composition of a peatland complex comprising ombrotrophic and minerotrophic, open and forested areas. We used redundancy analyses (RDA) and variation partitioning to assess the relative influences of chemical variables (peat and water characteristics), physical variables (hydrology, soil properties, shade), as well as broad‐scale (>350 m) and medium‐scale (100–350 m) spatial structures on vegetation assemblages. Results: We identified five different significant spatial patterns circumscribing (1) the minerotrophic–ombrotrophic gradient; (2) dry ombrotrophic and wet minerotrophic areas; (3) open and shaded areas; (4) dry open/shaded and wet patches within the ombrotrophic areas; and (5) dry open patches and dry forested patches. With spatial structures and environmental variables, we were able to model 30% of the variability in plant composition in the peatland complex, 13% of which was attributable to spatial structures alone. Conclusions: We demonstrated that in the peatland complex, the spatial dependence processes were more important at the broadest scale, and found that patterns at a medium scale might reflect finer‐scale patterns that were not investigated here. Spatial autocorrelation in vegetation composition in the peatland complex appeared to be driven by Sphagnum species. Our results emphasize that spatial modelling should be routinely implemented in studies looking at species composition, since they significantly increase the explained proportion of variance.     

Water level drawdown makes boreal peatland vegetation more responsive to weather conditions

Climate warming and projected increase in summer droughts puts northern peatlands under pressure by subjecting them to a combination of gradual drying and extreme weather events. The combined effect of those on peatland functions is poorly known. Here, we studied the impact of long-term water level drawdown (WLD) and contrasting weather conditions on leaf phenology and biomass production of ground level vegetation in boreal peatlands. Data were collected during two contrasting growing seasons from a WLD experiment including a rich and a poor fen and an ombrotrophic bog. Results showed that WLD had a strong effect on both leaf area development and biomass production, and these responses differed between peatland types. In the poor fen and the bog, WLD increased plant growth, while in the rich fen, WLD reduced the growth of ground level vegetation. Plant groups differed in their response, as WLD reduced the growth of graminoids, while shrubs and tree seedlings benefited from it. In addition, the vegetation adjusted to the lower WTs, was more responsive to short-term climatic variations. The warmer summer resulted in a greater maximum and earlier peaking of leaf area index, and greater biomass production by vascular plants and Sphagnum mosses at WLD sites. In particular, graminoids benefitted from the warmer conditions. The change towards greater production in the WLD sites in general and during the warmer weather in particular, was related to the observed transition in plant functional type composition towards arboreal vegetation.     

Status and restoration of peatlands in northern Europe

Environmental management of peatlands,landscape ecology and protection of keybiotopes have created needs and pressure torestore drained peatlands to natural mireecosystems. Here, we summarize differentapproaches and restoration techniquesdeveloped for peatland management inEstonia, Sweden, and Finland wherepeatlands are abundant. Without rewetting,plant colonisation on abandoned cut-awayareas is slow due to harsh hydrological andmicroclimatic conditions. However, after restoration, cut-away peatlands may returnto a functional state close to that ofpristine mires, and therefore restore a netcarbon sink function within a few years. Inaddition, restoration techniques can helpto create buffer zones between terrestrialand limnic ecosystems that reduces thenutrient loading imposed on watercourses byforestry operations. Restoration may alsobe important for peatland conservationprograms as drained peatlands are part ofpresent and future conservation areas.Finally, restoration actions in themselvescan have negative environmental impacts.For instance, inundation of peat surfacesresulting from the rewetting process oftenincreases phosphorus leaching. Efforts onpeatland restoration should focus onenvironmental monitoring, research onrestoration and its environmental impact aswell as public relations activities. Inthat respect, knowledge transfer betweenacademics and managers should generatesynergy benefits.     

Methane flux dynamics during mire succession

Vegetation, temperature and hydrology are major factors controlling wetland methane (CH₄) dynamics. In order to test their importance, we measured CH₄ emissions and environmental characteristics over 2 years from five mires representing a successional sequence, ranging in age from 178 to 2,520 years. We hypothesized CH₄ emissions to be higher from the sedge-dominated fens than from the older bog stage. The more constant hydrological conditions at later successional stages as a consequence of the thicker peat layer appeared to result in lower temporal variation in CH₄ emissions. Accordingly, the other controls, temperature and vegetation, had an effect on CH₄ emissions only when the water table was sufficiently high. The seasonal variation in CH₄ emissions was controlled by temperature only at the oldest study site, which had the lowest variation in water table. Within-season variation in emissions related to plant phenology was highest at the fen stage, which was dominated by aerenchymatous plants with a strong seasonal pattern, namely sedges and forbs. In contrast to our hypothesis, CH₄ emissions increased with mire age towards the bog stage. However, the trend did not emerge during a rainy growing season, due to a rise in CH₄ emissions at the younger stages. The results may imply two different mechanisms during mire succession: while old mires are able to avoid the perturbation associated with variation in the water table and maintain their function as CH₄ emitters, young mires are exposed to perturbation but are able to recover their function.