Urbanization reduces genetic connectivity in bobcats (Lynx rufus) at both intra– and interpopulation spatial scales

Urbanization is a major factor driving habitat fragmentation and connectivity loss in wildlife. However, the impacts of urbanization on connectivity can vary among species and even populations due to differences in local landscape characteristics, and our ability to detect these relationships may depend on the spatial scale at which they are measured. Bobcats (Lynx rufus) are relatively sensitive to urbanization and the status of bobcat populations is an important indicator of connectivity in urban coastal southern California. We genotyped 271 bobcats at 13,520 SNP loci to conduct a replicated landscape resistance analysis in five genetically distinct populations. We tested urban and natural factors potentially influencing individual connectivity in each population separately, as well as study–wide. Overall, landscape genomic effects were most frequently detected at the study–wide spatial scale, with urban land cover (measured as impervious surface) having negative effects and topographic roughness having positive effects on gene flow. The negative effect of urban land cover on connectivity was also evident when populations were analyzed separately despite varying substantially in spatial area and the proportion of urban development, confirming a pervasive impact of urbanization largely independent of spatial scale. The effect of urban development was strongest in one population where stream habitat had been lost to development, suggesting that riparian corridors may help mitigate reduced connectivity in urbanizing areas. Our results demonstrate the importance of replicating landscape genetic analyses across populations and considering how landscape genetic effects may vary with spatial scale and local landscape structure.     

Probing interactions between the coagulants thrombin, Factor XIII, and fibrin(ogen)

Thrombin cleaves fibrinopeptides A and B from fibrinogen leading to the formation of a fibrin network that is later covalently crosslinked by Factor XIII (FXIII). Thrombin helps activate FXIII by catalyzing hydrolysis of the FXIII activation peptides (AP). In the current work, the role of exosites in the ternary thrombin-FXIII-fibrin(ogen) complex was further explored. Hydrolysis studies indicate that thrombin predominantly utilizes its active site region to bind extended Factor XIII AP (FXIII AP 33-64 and 28-56) leaving the anion-binding exosites for fibrin(ogen) binding. The presence of fibrin-I leads to improvements in the K(m) for hydrolysis of FXIII AP (28-41), whereas peptides based on the cardioprotective FXIII V34L sequence exhibit less reliance on this cofactor. Surface plasmon resonance measurements reveal that d-Phe-Pro-Arg-chloromethylketone-thrombin binds to fibrinogen faster than to FXIII a(2) and dissociates from fibrinogen more slowly than from FXIII a(2). This system of thrombin exosite interactions with differing affinities promotes efficient clot formation.     

Offspring dependence on parental care and the role of parental transfer of oral fluids in burying beetles

Background

Immature stages of many animals can forage and feed on their own, whereas others depend on their parents’ assistance to obtain or process food. But how does such dependency evolve, and which offspring and parental traits are involved? Burying beetles (Nicrophorus) provide extensive biparental care, including food provisioning to their offspring. Interestingly, there is substantial variation in the reliance of offspring on post-hatching care among species. Here, we examine the proximate mechanisms underlying offspring dependence, focusing on the larvae of N. orbicollis, which are not able to survive in the absence of parents. We specifically asked whether the high offspring dependence is caused by (1) a low starvation tolerance, (2) a low ability to self-feed or (3) the need to obtain parental oral fluids. Finally, we determined how much care (i.e. duration of care) they require to be able to survive.

Results

We demonstrate that N. orbicollis larvae are not characterized by a lower starvation tolerance than larvae of the more independent species. Hatchlings of N. orbicollis are generally able to self-feed, but the efficiency depends on the kind of food presented and differs from the more independent species. Further, we show that even when providing highly dependent N. orbicollis larvae with easy ingestible liquefied mice carrion, only few of them survived to pupation. However, adding parental oral fluids significantly increased their survival rate. Finally, we demonstrate that survival and growth of dependent N. orbicollis larvae is increased greatly by only a few hours of parental care.

Conclusions

Considering the fact that larvae of other burying beetle species are able to survive in the absence of care, the high dependence of N. orbicollis larvae is puzzling. Even though they have not lost the ability to self-feed, an easily digestible, liquefied carrion meal is not sufficient to ensure their survival. However, our results indicate that the transfer of parental oral fluids is an essential component of care. In the majority of mammals, offspring rely on the exchange of fluids (i.e. milk) to survive, and our findings suggest that even in subsocial insects, such as burying beetles, parental fluids can significantly affect offspring survival.

     

Thrombin hydrolysis of V29F and V34L mutants of factor XIII (28-41) reveals roles of the P(9) and P(4) positions in factor XIII activation

In blood coagulation, thrombin helps to activate factor XIII by cleaving the activation peptide at the R37-G38 peptide bond. The more easily activated factor XIII V34L has been correlated with protection from myocardial infarction. V34L and V29F factor XIII mutant peptides were designed to further characterize substrate binding to thrombin. HPLC kinetic studies have been carried out on thrombin hydrolysis of FXIII activation peptide (28-41), FXIII (28-41) V34L, FXIII (28-41) V29F, and FXIII (28-41) V29F V34L. The V34L mutations lead to improvements in both K(m) and k(cat) whereas the V29F mutation primarily affects K(m). Interactions of the peptides with thrombin have been monitored by 1D proton line broadening NMR and 2D transferred NOESY studies. The results were compared with previously published X-ray crystal structures of thrombin-bound fibrinogen Aalpha (7-16), thrombin receptor PAR1 (38-60), and factor XIII (28-37). In solution, the (34)VVPR(37) and (34)LVPR(37) segments of the factor XIII activation peptide serve as the major anchor points onto thrombin. The N-terminal segments are proposed to interact transiently with the enzyme surface. Long-range NOEs from FXIII V29 or F29 toward (34)V/LVPR(37) have not been observed by NMR studies. Overall, the kinetic and NMR results suggest that the factor XIII activation peptide binds to thrombin in a manner more similar to the thrombin receptor PAR1 than to fibrinogen Aalpha. The V29 and V34 positions affect, in different ways, the ability of thrombin to effectively hydrolyze the activation peptide. Mutations at these sites may prove useful in controlling factor XIII activation.     

Brood discrimination, nest mate discrimination, and determinants of social behavior in facultatively quasisocial beetles (Nicrophorus spp.)

In this study we investigated ecological determinants of socialityin burying beetles (Nicrophorus spp.), potential conflicts ofinterest among reproductive females, and the effects of nestingfailure and costs of fighting on cooperation. Burying beetlesare known to form monogamous pairs when exploiting small vertebratecarcasses. More complex social behavior in this group is poorlyunderstood. We conducted experiments in which one or two females(N. defodiens, N. orbicollis) were provided small or large carcasseson which to breed. On large but not on small carcasses, twofemales often formed cooperative breeding associations (jointlyprepared a carcass and fed young). In N. defodiens, but notN. orbicollis, two females produced a larger brood than singlefemales on large carcasses. In both species, the reproductiveoutput per female was less for two than for one female. Thepresence of a second female did not decrease the preparationtime of a carcass (discovery of resource to egg hatch). Conflictwas evident between females. Trials employing females of similarsize were more likely to result in injury than trials usingfemales of dissimilar size (N. tomentosus, N. defodiens, N.orbicollis). In N. tomentosus, those associations that persistedthe longest resulted in the fewest injuries. After care of youngwas initiated, conflict among familiar nest mates was not observed.There was no evidence that breeding females could discriminatebetween brood; use of a genetic marker (N. orbicollis) demonstratedthat females fed related and unrelated young alike. Femalesof similar size (high potential cost of fighting for the dominantindividual) were not more likely to form cooperative breedingassociations than females of dissimilar size (low cost of fightingfor dominant). Females of a species subject to a high rate ofnest failure (N. defodiens) were more likely to cooperate thanfemales of a species with a low rate of nest failure (N. orbicollis).It is argued that limited reproductive opportunities, difficultyin controlling rivals' access to a large carcass, and the superabundantlarval food supply represented by a large carcass, but not kinselection, have contributed to the evolution of cooperativebehavior in this group. In addition, we hypothesize that beetlesmight initially tolerate consexual rivals on large carcasseswhen there is a high likelihood of nesting failure, therebyavoiding potentially costly conflicts.     

Conservation genetics of an island-endemic lizard: low Ne and the critical role of intermediate temperatures for genetic connectivity

Island populations are at higher risk of extinction than mainland populations. Therefore, understanding the factors that facilitate connectivity is particularly pressing for the conservation of island taxa. Sceloporus occidentalis becki, the Island Fence Lizard, is an endemic taxon restricted to the Northern Channel Islands, part of a nearshore archipelago in Southern California, USA. Since the Last Glacial Maximum, fence lizard habitat on the Northern Channel Islands has decreased with rising sea levels and increasing temperatures that have reduced the availability of woody vegetation. More recently, the introduction (and subsequent removal) of invasive ungulates over the last 170 years and recovery of vegetation has resulted in further dramatic habitat modification. Given the potential for genetic bottlenecks, the history of habitat alteration, and topographic and landscape complexity, we used landscape and population genetic approaches to characterize patterns of genetic diversity and structure of Island Fence Lizards on Santa Cruz Island, the largest of the Northern Channel Islands. Our analyses revealed shallow population structure across the island, low effective population size (N_e?=??~?200), and evidence for a recent genetic bottleneck. Landscape genetic analyses showed that connectivity is facilitated by tree canopy cover and shrubland, as well as by intermediate temperatures, emphasizing the importance of woody vegetation and habitats with variable thermal regimes as the climate warms. Combined, these population and landscape genetic analyses suggest that the Island Fence Lizard is of greater conservation concern than currently appreciated, and increased conservation management focus is warranted for this island endemic.

     

Influences of Parental Care and Food Deprivation on Regulation of Body Mass in a Burying Beetle

Changes in adult body mass during breeding can reveal how parents prepare energetically for care, the stress of care, and the need to terminate care in a state conducive for future reproduction. Interpreting changes in parent mass can be difficult, however, because temporal variation in body mass may reflect a constraint imposed by the stress of care, revealing conflict within the family, or a shift to a new body mass optimum adaptive for a different stage of the breeding cycle. Here, we examined the effect of food deprivation and parenting on variation in female body mass of Nicrophorus orbicollis, an insect in which parents and offspring share a common food resource (a prepared carrion ball). Female parents demonstrated a remarkable degree of regulation of body mass: Despite varied periods of food deprivation (0–8 d) prior to discovery of a carcass, females attained a similar body mass (108.3–109.2% of pre‐deprivation mass) at the time of larval hatching. Females attained a greater body mass in anticipation of rearing a greater number of young. Mothers lost mass during active parental care, and mass at the end of caregiving was less in mothers that reared more and heavier young. Body mass at the end of care was less than the preferred mass for females searching for a carcass, indicating that the mothers sacrificed self‐maintenance and future reproductive potential for their current brood. Contrary to prediction, pre‐breeding food deprivation had no effect on offspring size or on female condition at the end of care. We conclude that there is a limited degree of conflict over the sharing of food among N. orbicollis parents and offspring, but that this conflict is not exacerbated by food deprivation prior to breeding.     

Maternal Care, Iteroparity and the Evolution of Social Behavior: A Critique of the Semelparity Hypothesis

The Semelparity Hypothesis (Tallamy and Brown in Animal Behav 57:727–730, 1999) predicts that among insects with parental care that iteroparity will be rare. It represents two important challenges. First, life history ecologists have sometimes linked extended parental care with iteroparity, not semelparity, as part of a suite of correlated characters associated with K-selective environments. Second, behavioral ecologists have developed theories for the evolution of eusociality that rely upon a subsocial species producing multiple cohorts of offspring, a precondition for offspring allocare and/or inheritance of a social unit. Using a database of invertebrates exhibiting maternal care in Costa (The other insect societies. Harvard University Press, Cambridge, 2006), the association between semelparity and maternal care was tested using a broad comparative analysis. Semelparity was found in only 24.5 % of the best-studied representative species. In addition, semelparity was more rare in species that form nests, burrows or galleries (12.1 %) than in species that guard offspring out in the open (45.0 %). Iteroparity was common both among nesting species with non-overlapping broods (serial nesting) and in species where a female produces broods of different aged offspring in the same nest (within-nest iteroparity). It is hypothesized that common factors, particularly rapid juvenile development on high quality resources, facilitated both serial nesting and parental care. Within-nest iteroparity is an essential stage in the evolution of eusociality that has often been overlooked. Recent models of sibling conflict and reproductive spacing suggest that parental care can be an indirect cause of within-nest iteroparity despite the fact that parental investment can lead directly to diminished future reproduction. The reversal of this life history correlation may occur as a result of the transition between asocial and subsocial nesting behavior; analogous reversals may be a frequent outcome of transitions between levels of social organization.     

The Costs of Confronting Infanticidal Intruders in a Burying Beetle

Infanticide by unrelated adults is a complex behavior in burying beetles (Nicrophorus spp.) serving multiple functions (resource competition, access to mates, cannibalism). The costs of confronting an infanticidal intruder are likely to vary with context. To assess these costs for a single female parent (Nicrophorus pustulatus), we systematically manipulated the sex of a conspecific intruder and the timing of the intrusion. Male intruders were a greater takeover threat than female intruders, and infanticidal takeovers were more common earlier in the breeding cycle. Even though a male intruder posed a greater threat to the brood, a female intruder was a greater threat to the reproductive success of the resident female. Female intruders that took over a carcass excluded the resident female from the resource. When a male intruder took over a carcass, the resident female was able to recover much of her loss by producing a replacement brood. Even when females successfully defended their broods, they suffered decreased reproductive output relative to control females that never had to confront an intruder (expt 1), but the mechanisms underlying this cost were unclear. To test the hypothesis that defeated female intruders attempt to parasitize late‐stage broods, female intruders whose eggs could be identified by a fat‐soluble dye were introduced to resident females caring for larvae (expt 2). Fifteen of 20 intruders oviposited eggs and the number of eggs were related to intrusion pressure. Because resident females rarely produced eggs while caring for larvae, it is uncertain whether the behavior of the defeated female should be characterized as brood parasitism, a failed takeover attempt, or an attempt to use the remains of the depleted resource. This study provides the most complete picture of the changing costs of confronting an infanticidal threat throughout the vulnerable period of offspring development.